Sinibacillus soli gen. nov., sp. nov., a moderately thermotolerant member of the family Bacillaceae

International Journal of Systematic and Evolutionary Microbiology

Volumn 64, Issue PART 5, 2014, Pages 1647-1653

  Yang, Guiqin ^a   Zhou, Shungui ^a  

^a GUANGDONG INSTITUTE OF ECO ENVIRONMENTAL AND SOIL SCIENCES   (China)

Author keywords

[No Author keywords available]

Indexed keywords

CARDIOLIPIN; CATALASE; DIAMINOPIMELIC ACID; FATTY ACID; GENOMIC DNA; MENAQUINONE; OXIDOREDUCTASE; PEPTIDOGLYCAN; PHOSPHATIDYLGLYCEROL; RNA 16S;

ARTICLE; BACILLACEAE; BACTERIAL STRAIN; GENE SEQUENCE; GRAM POSITIVE BACTERIUM; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PHYLOGENY; PRIORITY JOURNAL; SINIBACILLUS SOLI; TAXONOMY;

BACILLACEAE; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; BIOELECTRIC ENERGY SOURCES; BIOFILMS; CHINA; DIAMINOPIMELIC ACID; DNA, BACTERIAL; FATTY ACIDS; GEOLOGIC SEDIMENTS; HOT SPRINGS; MOLECULAR SEQUENCE DATA; PEPTIDOGLYCAN; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; TREES; VITAMIN K 2;

EID: 84900027993     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.055608-0     Document Type: Article

References (30)

1. Amoozegar, M. A., Bagheri, M., Didari, M., Shahzedeh Fazeli, S. A., Schumann, P., Sánchez-Porro, C. & Ventosa, A. (2013). Saliterribacillus persicus gen. nov., sp. nov., a moderately halophilic bacterium isolated from a hypersaline lake. Int J Syst Evol Microbiol 63, 345-351.
2. An, S. Y., Asahara, M., Goto, K., Kasai, H. & Yokota, A. (2007). Terribacillus saccharophilus gen. nov., sp. nov. and Terribacillus halophilus sp. nov., spore-forming bacteria isolated from field soil in Japan. Int J Syst Evol Microbiol 57, 51-55.
3. Baker, G. C., Smith, J. J. & Cowan, D. A. (2003). Review and re-analysis of domain-specific 16S primers. J Microbiol Methods 55, 541-555.
4. Breznak, J. A. & Costilow, R. N. (1994). Physicochemical factors in growth. In Methods for General and Molecular Bacteriology, pp. 137-154. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
5. Carrasco, I. J., Márquez, M. C., Xue, Y., Ma, Y., Cowan, D. A., Jones, B. E., Grant, W. D. & Ventosa, A. (2008). Sediminibacillus halophilus gen. nov., sp. nov., a moderately halophilic, Gram-positive bacterium from a hypersaline lake. Int J Syst Evol Microbiol 58, 1961-1967.
6. Collins, M. D., Pirouz, T., Goodfellow, M. & Minnikin, D. E. (1977). Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100, 221-230.
7. Dong, X. & Cai, M. (2001). Manual of Systematic and Determinative Bacteriology. Beijing: Academic Press (in Chinese).
8. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
9. Groth, I., Schumann, P., Rainey, F. A., Martin, K., Schuetze, B. & Augsten, K. (1997). Demetria terragena gen. nov., sp. nov., a new genus of actinomycetes isolated from compost soil. Int J Syst Bacteriol 47, 1129-1133.
10. Heyndrickx, M., Lebbe, L., Kersters, K., De Vos, P., Forsyth, G. & Logan, N. A. (1998). Virgibacillus: a new genus to accommodate Bacillus pantothenticus (Proom and Knight 1950). Emended description of Virgibacillus pantothenticus. Int J Syst Bacteriol 48, 99-106.
11. Heyrman, J., Logan, N. A., Busse, H. J., Balcaen, A., Lebbe, L., Rodriguez-Diaz, M., Swings, J. & De Vos, P. (2003). Virgibacillus carmonensis sp. nov., Virgibacillus necropolis sp. nov. and Virgibacillus picturae sp. nov., three novel species isolated from deteriorated mural paintings, transfer of the species of the genus Salibacillus to Virgibacillus, as Virgibacillus marismortui comb. nov. and Virgibacillus salexigens comb. nov., and emended description of the genus Virgibacillus. Int J Syst Evol Microbiol 53, 501-511.
12. Hirota, K., Aino, K., Nodasaka, Y. & Yumoto, I. (2013). Oceanobacillus indicireducens sp. nov., a facultative alkaliphile that reduces an indigo dye. Int J Syst Evol Microbiol 63, 1437-1442.
13. Kim, Y. G., Choi, D. H., Hyun, S. & Cho, B. C. (2007). Oceanobacillus profundus sp. nov., isolated from a deep-sea sediment core. Int J Syst Evol Microbiol 57, 409-413.
14. Kim, O. S., Cho, Y. J., Lee, K., Yoon, S. H., Kim, M., Na, H., Park, S. C., Jeon, Y. S., Lee, J. H. & other authors (2012). Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62, 716-721.
15. Leifson, E. (1963). Determination of carbohydrate metabolism of marine bacteria. J Bacteriol 85, 1183-1184.
16. Logan, N. A., Berge, O., Bishop, A. H., Busse, H. J., De Vos, P., Fritze, D., Heyndrickx, M., Kämpfer, P., Rabinovitch, L. &other authors (2009). Proposed minimal standards for describing new taxa of aerobic, endospore-forming bacteria. Int J Syst Evol Microbiol 59, 2114-2121.
17. Lu, J., Nogi, Y. & Takami, H. (2001). Oceanobacillus iheyensis gen. nov., sp. nov., a deep-sea extremely halotolerant and alkaliphilic species isolated from a depth of 1050 m on the Iheya Ridge. FEMS Microbiol Lett 205, 291-297.
18. Mayr, R., Busse, H. J., Worliczek, H. L., Ehling-Schulz, M. & Scherer, S. (2006). Ornithinibacillus gen. nov., with the species Ornithinibacillus bavariensis sp. nov. and Ornithinibacillus californiensis sp. nov. Int J Syst Evol Microbiol 56, 1383-1389.
19. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by highperformance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
20. Minnikin, D. E., O'Donnell, A. G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, A. & Parlett, J. H. (1984). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2, 233-241.
21. Nazina, T. N., Tourova, T. P., Poltaraus, A. B., Novikova, E. V., Grigoryan, A. A., Ivanova, A. E., Lysenko, A. M., Petrunyaka, V. V., Osipov, G. A. & other authors (2001). Taxonomic study of aerobic thermophilic bacilli: descriptions of Geobacillus subterraneus gen. nov., sp. nov. and Geobacillus uzenensis sp. nov. from petroleum reservoirs and transfer of Bacillus stearothermophilus, Bacillus thermocatenulatus, Bacillus thermoleovorans, Bacillus kaustophilus, Bacillus thermoglucosidasius and Bacillus thermodenitrificans to Geobacillus as the new combinations G. stearothermophilus, G. thermocatenulatus, G. thermoleovorans, G. kaustophilus, G. thermoglucosidasius and G. thermodenitrificans. Int J Syst Evol Microbiol 51, 433-446.
22. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI.
23. Schleifer, K. H. & Kandler, O. (1972). Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol Rev 36, 407-477.
24. Schumann, P. (2011). Peptidoglycan structure. Methods Microbiol 38, 101-129.
25. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
26. Spring, S., Ludwig, W., Márquez, M. C., Ventosa, A. & Schleifer, K. H. (1996). Halobacillus gen. nov., with description of Halobacillus litoralis sp. nov. and Halobacillus trueperi sp. nov., and transfer of Sporosarcina halophila to Halobacillus halophilus comb. nov. Int J Syst Bacteriol 46, 492-496.
27. Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. & Kumar, S. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28, 2731-2739.
28. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
29. Wang, X., Xue, Y. & Ma, Y. (2011). Streptohalobacillus salinus gen. nov., sp. nov., a moderately halophilic, Gram-positive, facultative anaerobe isolated from subsurface saline soil. Int J Syst Evol Microbiol 61, 1127-1132.
30. Zarilla, K. & Perry, J. J. (1987). Bacillus thermoleovorans, sp. nov., a species of obligately thermophilic hydrocarbon utilizing endosporeforming bacteria. Syst Appl Microbiol 9, 258-264.