Chryseobacterium aahli sp. nov., isolated from lake trout (Salvelinus namaycush) and brown trout (Salmo trutta), and emended descriptions of chryseobacterium ginsenosidimutans and chryseobacterium gregarium

International Journal of Systematic and Evolutionary Microbiology

Volumn 64, Issue PART 5, 2014, Pages 1573-1579

  Loch, Thomas P ^a   Faisal, Mohamed ^a  

^a MICHIGAN STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CATALASE; CYTOCHROME C OXIDASE; FATTY ACID; RNA 16S;

ARTICLE; BROWN TROUT; CHRYSEOBACTERIUM; CHRYSEOBACTERIUM AAHLI; CHRYSEOBACTERIUM GINSENOSIDIMUTANS; CHRYSEOBACTERIUM GREGARIUM; DNA DNA HYBRIDIZATION; GENE SEQUENCE; GRAM NEGATIVE BACTERIUM; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; TROUT;

ANIMALS; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; BAYES THEOREM; CHRYSEOBACTERIUM; DNA, BACTERIAL; FATTY ACIDS; LAKES; MICHIGAN; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHYLOGENY; PIGMENTATION; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; TROUT;

EID: 84900018393     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.052373-0     Document Type: Article

References (55)

1. Anacker, R. L. & Ordal, E. J. (1955). Study of a bacteriophage infecting the myxobacterium Chondrococcus columnaris. J Bacteriol 70, 738-741
2. Behrendt, U., Ulrich, A. & Schumann, P. (2008). Chryseobacterium gregarium sp. nov., isolated from decaying plant material. Int J Syst Evol Microbiol 58, 1069-1074
3. Benedetti, P., Rassu, M., Pavan, G., Sefton, A. & Pellizzer, G. (2011). Septic shock, pneumonia, and soft tissue infection due to Myroides odoratimimus: report of a case and review of Myroides infections. Infection 39, 161-165
4. Bernardet, J.-F. & Nakagawa, Y. (2006). An introduction to the family Flavobacteriaceae. In The Prokaryotes, 3rd edn, vol. 7, pp. 455-480. Edited by M. Dworkin, S. Falkow, E. Rosenberg, K. H. Schleifer & E. Stackebrandt. New York: Springer.
5. Bernardet, J.-F., Segers, P., Vancanneyt, M., Berthe, F., Kersters, K. & Vandamme, P. (1996). Cutting a Gordian knot: emended classification and description of the genus Flavobacterium, emended description of the family Flavobacteriaceae, and proposal of Flavobacterium hydatis nom. nov. (basonym, Cytophaga aquatilis Strohl and Tait 1978). Int J Syst Bacteriol 46, 128-148
6. Bernardet, J.-F., Nakagawa, Y., Holmes, B. &Subcommittee on the taxonomy of Flavobacterium and Cytophaga-like bacteria of the International Committee on Systematics of Prokaryotes (2002). Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. Int J Syst Evol Microbiol 52, 1049-1070
7. Bernardet, J.-F., Vancanneyt, M., Matte-Tailliez, O., Grisez, L., Tailliez, P., Bizet, C., Nowakowski, M., Kerouault, B. & Swings, J. (2005). Polyphasic study of Chryseobacterium strains isolated from diseased aquatic animals. Syst Appl Microbiol 28, 640-660
8. Bernardet, J.-F., Hugo, C. & Bruun, B. (2011). Genus VII. Chryseobacterium Vandamme et al. 1994. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 4, pp. 180-196. Edited by N. R. Krieg, W. Ludwig, W. B. Whitman, B. P. Hedlund, B. J. Paster, J. T. Staley, N. Ward, D. Brown & A. Parte. New York: Springer.
9. Bullock, G. L., Hsu, T. C. & Shotts, E. B. (1986). Columnaris disease of salmonids. US Fish and Wildlife Service, Fish Disease Leaflet 72
10. Cleenwerck, I., Vandemeulebroecke, K., Janssens, D. & Swings, J. (2002). Re-examination of the genus Acetobacter, with descriptions of Acetobacter cerevisiae sp. nov. and Acetobacter malorum sp. nov. Int J Syst Evol Microbiol 52, 1551-1558.
11. de Beer, H., Hugo, C. J., Jooste, P. J., Vancanneyt, M., Coenye, T. & Vandamme, P. (2006). Chryseobacterium piscium sp. nov., isolated from fish of the South Atlantic Ocean off South Africa. Int J Syst Evol Microbiol 56, 1317-1322
12. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229
13. Goris, J., Suzuki, K., De Vos, P., Nakase, T. & Kersters, K. (1998). Evaluation of a microplate DNA-DNA hybridization method compared with the initial renaturation method. Can J Microbiol 44, 1148-1153
14. Haburjak, J. J. & Schubert, T. A. (1997). Flavobacterium breve meningitis in a dog. J Am Anim Hosp Assoc 33, 509-512
15. Hall, T. A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41, 95-98
16. Hernandez-Divers, S. J., Hensel, P., Gladden, J., Hernandez-Divers, S. M., Buhlmann, K. A., Hagen, C., Sanchez, S., Latimer, K. S., Ard, M. & Camus, A. C. (2009). Investigation of shell disease in map turtles (Graptemys spp.). J Wildl Dis 45, 637-652
17. Ilardi, P., Fernández, J. & Avendaño-Herrera, R. (2009). Chryseobacterium piscicola sp. nov., isolated from diseased salmonid fish. Int J Syst Evol Microbiol 59, 3001-3005
18. Ilardi, P., Abad, J., Rintamäki, P., Bernardet, J.-F. & Avendaño- Herrera, R. (2010). Phenotypic, serological and molecular evidence of Chryseobacterium piscicola in farmed Atlantic salmon, Salmo salar L., in Finland. J Fish Dis 33, 179-181
19. Im, W.-T., Yang, J.-E., Kim, S.-Y. & Yi, T.-H. (2011). Chryseobacterium ginsenosidimutans sp. nov., a bacterium with ginsenoside-converting activity isolated from soil of a Rhus vernicifera-cultivated field. Int J Syst Evol Microbiol 61, 1430-1435
20. Kämpfer, P., Vaneechoutte, M., Lodders, N., De Baere, T., Avesani, V., Janssens, M., Busse, H. J. & Wauters, G. (2009). Description of Chryseobacterium anthropi sp. nov. to accommodate clinical isolates biochemically similar to Kaistella koreensis and Chryseobacterium haifense, proposal to reclassify Kaistella koreensis as Chryseobacterium koreense comb. nov. and emended description of the genus Chryseobacterium. Int J Syst Evol Microbiol 59, 2421-2428
21. Kämpfer, P., Fallschissel, K. & Avendaño-Herrera, R. (2011). Chryseobacterium chaponense sp. nov., isolated from farmed Atlantic salmon (Salmo salar). Int J Syst Evol Microbiol 61, 497-501
22. Kim, K. K., Kim, M.-K., Lim, J. H., Park, H. Y. & Lee, S.-T. (2005). Transfer of Chryseobacterium meningosepticum and Chryseobacterium miricola to Elizabethkingia gen. nov. as Elizabethkingia meningoseptica comb. nov. and Elizabethkingia miricola comb. Int J Syst Evol Microbiol 55, 1287-1293
23. Kim, O. S., Cho, Y. J., Lee, K., Yoon, S. H., Kim, M., Na, H., Park, S. C., Jeon, Y. S., Lee, J. H. & other authors (2012). Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62, 716-721
24. Li, H., Qiao, G., Gu, J. Q., Zhou, W., Li, Q., Woo, S. H., Xu, D. H. & Park, S. I. (2010). Phenotypic and genetic characterization of bacteria isolated from diseased cultured sea cucumber Apostichopus japonicus in northeastern China. Dis Aquat Organ 91, 223-235
25. Lin, T.-P., Caspar, T., Somerville, C. & Preiss, J. (1988). Isolation and characterization of a starchless mutant of Arabidopsis thaliana (L.) Heynh. lacking ADPglucose pyrophosphorylase activity. Plant Physiol 86, 1131-1135
26. Loch, T. P. (2012). Identification of novel flavobacteria from Michigan and assessment of their impacts on fish health. PhD dissertation, Department of Pathobiology and Diagnostic Investigation, Michigan State University, East Lansing, MI, USA.
27. Loch, T.P. & Faisal, M. (2014). Flavobacterium spartansii sp. nov., a pathogen of fishes, and emended descriptions of Flavobacterium aquidurense and Flavobacterium araucananum. Int J Syst Evol Microbiol 64, 406-412
28. Loch, T. P., Kumar, R., Xu, W. & Faisal, M. (2011). Carnobacterium maltaromaticum infections in feral Oncorhynchus spp. (family Salmonidae) in Michigan. J Microbiol 49, 703-713
29. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by highperformance liquid chromatography. Int J Syst Bacteriol 39, 159-167
30. Montero-Calasanz, M. C., Göker, M., Rohde, M., Spröer, C., Schumann, P., Busse, H.-J., Schmid, M., Tindall, B. J., Klenk, H.-P. & Camacho, M. (2013). Chryseobacterium hispalense sp. nov., a plantgrowth- promoting bacterium isolated from a rainwater pond in an olive plant nursery, and emended descriptions of Chryseobacterium defluvii, Chryseobacterium indologenes, Chryseobacterium wanjuense and Chryseobacterium gregarium. Int J Syst Evol Microbiol 63, 4386-4395
31. Mudarris, M. & Austin, B. (1989). Systemic disease in turbot Scophthalmus maximus caused by a previously unrecognized Cytophaga-like bacterium. Dis Aquat Organ 6, 161-166
32. Mudarris, M., Austin, B., Segers, P., Vancanneyt, M., Hoste, B. & Bernardet, J.-F. (1994). Flavobacterium scophthalmum sp. nov., a pathogen of turbot (Scophthalmus maximus L.). Int J Syst Bacteriol 44, 447-453
33. Pacha, R. E. & Porter, S. (1968). Characteristics of myxobacteria isolated from the surface of freshwater fish. Appl Microbiol 16, 1901-1906
34. Rambaut, A. (2009). FigTree Tree Figure Drawing Tool, version 1.3.1. Institute of Evolutionary Biology, University of Edinburgh, Edinburgh, UK.
35. Reichenbach, H. (1992). The order Cytophagales. In The Prokaryotes, 2nd edn, vol. 4, pp. 3631-3675. Edited by A. Balows, H. G. Trüper, M. Dworkin, W. Harder & K.-H. Schleifer. New York: Springer.
36. Ronquist, F. & Huelsenbeck, J. P. (2003). MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19, 1572-1574
37. Sacchi, C. T., Whitney, A. M., Mayer, L. W., Morey, R., Steigerwalt, A., Boras, A., Weyant, R. S. & Popovic, T. (2002). Sequencing of 16S rRNA gene: a rapid tool for identification of Bacillus anthracis. Emerg Infect Dis 8, 1117-1123
38. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425
39. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
40. Segers, P., Mannheim, W., Vancanneyt, M., De Brandt, K., Hinz, K.-H., Kersters, K. & Vandamme, P. (1993). Riemerella anatipestifer gen. nov., comb. nov., the causative agent of septicemia anserum exsudativa, and its phylogenetic affiliation within the Flavobacterium- Cytophaga rRNA homology group. Int J Syst Bacteriol 43, 768-776
41. Shotts, E. B. J. & Starliper, C. E. (1999). Flavobacterial diseases: columnaris disease, cold-water disease and bacterial gill disease. In Fish Diseases and Disorders, vol. 3, pp. 559-576. Edited by P. T. K. Woo & D. W. Bruno. Wallingford, UK: CAB International.
42. Shotts, E. B., Hsu, T. C. & Waltman, W. D. (1985). Extracellular proteolytic activity of Aeromonas hydrophila complex. Fish Pathol 20, 37-44
43. Starliper, C. E. (2011). Bacterial coldwater disease of fishes caused by Flavobacterium psychrophilum. J Adv Res 2, 97-108
44. Suzuki, M., Nakagawa, Y., Harayama, S. & Yamamoto, S. (2001). Phylogenetic analysis and taxonomic study of marine Cytophaga-like bacteria: proposal for Tenacibaculum gen. nov. with Tenacibaculum maritimum comb. nov. and Tenacibaculum ovolyticum comb. nov., and description of Tenacibaculum mesophilum sp. nov. and Tenacibaculum amylolyticum sp. nov. Int J Syst Evol Microbiol 51, 1639-1652
45. Swofford, D. L. (2001). PAUP 4.0. Phylogenetic Analysis Using Parsimony (and other methods). Sunderland, MA: Sinauer Associates.
46. Tamura, K., Nei, M. & Kumar, S. (2004). Prospects for inferring very large phylogenies by using the neighbor-joining method. Proc Natl Acad Sci U S A 101, 11030-11035
47. Vandamme, P., Bernardet, J.-F., Segers, P., Kersters, K. & Holmes, B. (1994). New perspectives in the classification of the flavobacteria: description of Chryseobacterium gen. nov., Bergeyella gen. nov., and Empedobacter nom. rev. Int J Syst Bacteriol 44, 827-831
48. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464
49. Whitman, K. A. (2004). Finfish and Shellfish Bacteriology Manual: Techniques and Procedures. Ames, IA: Iowa State Press.
50. Wilson, K. (1987). Preparation of genomic DNA from bacteria. In Current Protocols in Molecular Biology, pp. 2.4.1-2.4.5. Edited by F. M. Ausubel, R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith & K. Struhl. New York: Green Publishing & Wiley- Interscience.
51. Wu, Y. F., Wu, Q. L. & Liu, S. J. (2013). Chryseobacterium taihuense sp. nov., isolated from a eutrophic lake, and emended descriptions of the genus Chryseobacterium, Chryseobacterium taiwanense, Chryseobacterium jejuense and Chryseobacterium indoltheticum. Int J Syst Evol Microbiol 63, 913-919
52. Xie, Z. Y., Zhou, Y. C., Wang, S. F., Mei, B., Xu, X. D., Wen, W. Y. & Feng, Y. Q. (2009). First isolation and identification of Elizabethkingia meningoseptica from cultured tiger frog, Rana tigerina rugulosa. Vet Microbiol 138, 140-144
53. Zamora, L., Vela, A. I., Palacios, M. A., Sánchez-Porro, C., Svensson- Stadler, L. A., Domínguez, L., Moore, E. R., Ventosa, A. & Fernández- Garayzábal, J.-F. (2012a). Chryseobacterium viscerum sp. nov., isolated from diseased fish. Int J Syst Evol Microbiol 62, 2934-2940
54. Zamora, L., Fernández-Garayzábal, J. F., Palacios, M. A., Sánchez- Porro, C., Svensson-Stadler, L. A., Domínguez, L., Moore, E. R. B., Ventosa, A. & Vela, A. I. (2012b). Chryseobacterium oncorhynchi sp. nov., isolated from rainbow trout (Oncorhynchus mykiss). Syst Appl Microbiol 35, 24-29
55. Zamora, L., Vela, A. I., Palacios, M. A., Sánchez-Porro, C., Moore, E. R., Domínguez, L., Ventosa, A. & Fernández-Garayzábal, J.-F. (2012c). Chryseobacterium tructae sp. nov., isolated from rainbow trout (Oncorhynchus mykiss). Syst Appl Microbiol 35, 315-319.