-
1
-
-
53449086190
-
Tag-encoded pyrosequencing analysis of bacterial diversity in a single soil type as affected by management and land use
-
Acosta-Martínez V., Dowd S.E., Sun Y., Allen V. Tag-encoded pyrosequencing analysis of bacterial diversity in a single soil type as affected by management and land use. Soil Biology and Biochemistry 2008, 40:2762-2770.
-
(2008)
Soil Biology and Biochemistry
, vol.40
, pp. 2762-2770
-
-
Acosta-Martínez, V.1
Dowd, S.E.2
Sun, Y.3
Allen, V.4
-
2
-
-
49449087111
-
Long-term organic farming fosters below and aboveground biota: implications for soil quality, biological control and productivity
-
Birkhofer K., Bezemer T.M. Long-term organic farming fosters below and aboveground biota: implications for soil quality, biological control and productivity. Soil Biology and Biochemistry 2008, 40:2297-2308.
-
(2008)
Soil Biology and Biochemistry
, vol.40
, pp. 2297-2308
-
-
Birkhofer, K.1
Bezemer, T.M.2
-
3
-
-
85056041519
-
Presence of actinobacterial and fungal communities in clean and petroleum hydrocarbon contaminated subsurface soil
-
Björklöf K., Karlsson S., Frostegård Å., Jørgensen K. Presence of actinobacterial and fungal communities in clean and petroleum hydrocarbon contaminated subsurface soil. The Open Microbiology Journal 2009, 3:75-86.
-
(2009)
The Open Microbiology Journal
, vol.3
, pp. 75-86
-
-
Björklöf, K.1
Karlsson, S.2
Frostegård, Å.3
Jørgensen, K.4
-
4
-
-
0034898780
-
The structure of microbial communities in soil and the lasting impact of cultivation
-
Buckley D.H., Schmidt T.M. The structure of microbial communities in soil and the lasting impact of cultivation. Microbial Ecology 2001, 42:11-21.
-
(2001)
Microbial Ecology
, vol.42
, pp. 11-21
-
-
Buckley, D.H.1
Schmidt, T.M.2
-
5
-
-
78049437553
-
The effect of nutrient deposition on bacterial communities in Arctic tundra soil
-
Campbell B.J., Polson S.W., Hanson T.E., Mack M.C., Schuur E.A.G. The effect of nutrient deposition on bacterial communities in Arctic tundra soil. Environmental Microbiology 2010, 12:1842-1854.
-
(2010)
Environmental Microbiology
, vol.12
, pp. 1842-1854
-
-
Campbell, B.J.1
Polson, S.W.2
Hanson, T.E.3
Mack, M.C.4
Schuur, E.A.G.5
-
6
-
-
78349260124
-
Soil bacterial diversity in the Arctic is not fundamentally different from that found in other biomes
-
Chu H., Fierer N., Lauber C.L., Caporaso J.G., Knight R., Grogan P. Soil bacterial diversity in the Arctic is not fundamentally different from that found in other biomes. Environmental Microbiology 2010, 12:2998-3006.
-
(2010)
Environmental Microbiology
, vol.12
, pp. 2998-3006
-
-
Chu, H.1
Fierer, N.2
Lauber, C.L.3
Caporaso, J.G.4
Knight, R.5
Grogan, P.6
-
7
-
-
58149200948
-
The Ribosomal Database Project: improved alignments and new tools for rRNA analysis
-
Cole J.R., Wang Q., Cardenas E., Fish J., Chai B., Farris R.J., Kulam-Syed-Mohideen A.S., McGarrell D.M., Marsh T., Garrity G.M., Tiedje J.M. The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic Acids Research 2009, 37:141-145.
-
(2009)
Nucleic Acids Research
, vol.37
, pp. 141-145
-
-
Cole, J.R.1
Wang, Q.2
Cardenas, E.3
Fish, J.4
Chai, B.5
Farris, R.J.6
Kulam-Syed-Mohideen, A.S.7
McGarrell, D.M.8
Marsh, T.9
Garrity, G.M.10
Tiedje, J.M.11
-
9
-
-
84860647701
-
Digging deeper to find unique microbial communities: the strong effect of depth on the structure of bacterial and archaeal communities in soil
-
Eilers K.G., Debenport S., Anderson S., Fierer N. Digging deeper to find unique microbial communities: the strong effect of depth on the structure of bacterial and archaeal communities in soil. Soil Biology and Biochemistry 2012, 50:58-65.
-
(2012)
Soil Biology and Biochemistry
, vol.50
, pp. 58-65
-
-
Eilers, K.G.1
Debenport, S.2
Anderson, S.3
Fierer, N.4
-
11
-
-
0037227464
-
Variations in microbial community composition through two soil depth profiles
-
Fierer N., Schimel J.P., Holden P.A. Variations in microbial community composition through two soil depth profiles. Soil Biology and Biochemistry 2003, 35:167-176.
-
(2003)
Soil Biology and Biochemistry
, vol.35
, pp. 167-176
-
-
Fierer, N.1
Schimel, J.P.2
Holden, P.A.3
-
13
-
-
36049040295
-
Stability of organic carbon in deep soil layers controlled by fresh carbon supply
-
Fontaine S., Barot S., Barré P., Bdioui N., Mary B., Rumpel C. Stability of organic carbon in deep soil layers controlled by fresh carbon supply. Nature 2007, 450:277-281.
-
(2007)
Nature
, vol.450
, pp. 277-281
-
-
Fontaine, S.1
Barot, S.2
Barré, P.3
Bdioui, N.4
Mary, B.5
Rumpel, C.6
-
14
-
-
40449117321
-
Long-term fertilization regimes and diversity of an agricultural affect bacterial community structure soil in northern China
-
Ge Y., Zhang J.B., Zhang L.M., Yang M., He J.Z. Long-term fertilization regimes and diversity of an agricultural affect bacterial community structure soil in northern China. Journal of Soils and Sediments 2008, 8:43-50.
-
(2008)
Journal of Soils and Sediments
, vol.8
, pp. 43-50
-
-
Ge, Y.1
Zhang, J.B.2
Zhang, L.M.3
Yang, M.4
He, J.Z.5
-
15
-
-
33748796867
-
Microbial population dynamics associated with crude-oil biodegradation in diverse soils
-
Hamamura N., Olson S.H., Ward D.M., Inskeep W.P. Microbial population dynamics associated with crude-oil biodegradation in diverse soils. Applied and Environment Microbiology 2006, 72:6316-6324.
-
(2006)
Applied and Environment Microbiology
, vol.72
, pp. 6316-6324
-
-
Hamamura, N.1
Olson, S.H.2
Ward, D.M.3
Inskeep, W.P.4
-
16
-
-
40549127742
-
Changes in bacterial and archaeal community structure and functional diversity along a geochemically variable soil profile
-
Hansel C.M., Fendorf S., Jardine P.M., Francis C.A. Changes in bacterial and archaeal community structure and functional diversity along a geochemically variable soil profile. Environmental Microbiology 2008, 74:1620-1633.
-
(2008)
Environmental Microbiology
, vol.74
, pp. 1620-1633
-
-
Hansel, C.M.1
Fendorf, S.2
Jardine, P.M.3
Francis, C.A.4
-
17
-
-
71249160545
-
Bacterial, archeal and eukaryal community structures throughout soil horizons of harvested and naturally disturbed forest stands
-
Hartmann M., Lee S., Hallam S.J., Mohn W.W. Bacterial, archeal and eukaryal community structures throughout soil horizons of harvested and naturally disturbed forest stands. Environmental Microbiology 2009, 11:3045-3062.
-
(2009)
Environmental Microbiology
, vol.11
, pp. 3045-3062
-
-
Hartmann, M.1
Lee, S.2
Hallam, S.J.3
Mohn, W.W.4
-
18
-
-
34948842866
-
Accuracy and quality of massively parallel DNA pyrosequencing
-
Huse S., Huber J., Morrison H., Sogin M., Welch D. Accuracy and quality of massively parallel DNA pyrosequencing. Genome Biology 2007, 8:R143.
-
(2007)
Genome Biology
, vol.8
-
-
Huse, S.1
Huber, J.2
Morrison, H.3
Sogin, M.4
Welch, D.5
-
19
-
-
53649103674
-
Relative impacts of land-use, management intensity and fertilization upon soil microbial community structure in agricultural systems
-
Jangid K., Williams M.A., Franzluebbers A.J., Sanderlin J.S., Reeves J.H., Jenkins M.B., Endale D.M., Coleman D.C., Whitman W.B. Relative impacts of land-use, management intensity and fertilization upon soil microbial community structure in agricultural systems. Soil Biology and Biochemistry 2008, 40:2843-2853.
-
(2008)
Soil Biology and Biochemistry
, vol.40
, pp. 2843-2853
-
-
Jangid, K.1
Williams, M.A.2
Franzluebbers, A.J.3
Sanderlin, J.S.4
Reeves, J.H.5
Jenkins, M.B.6
Endale, D.M.7
Coleman, D.C.8
Whitman, W.B.9
-
20
-
-
63349105158
-
Acomprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses
-
Jones R.T., Robeson M.S., Lauber C.L., Hamady M., Knight R., Fierer N. Acomprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses. The ISME Journal 2009, 3:442-453.
-
(2009)
The ISME Journal
, vol.3
, pp. 442-453
-
-
Jones, R.T.1
Robeson, M.S.2
Lauber, C.L.3
Hamady, M.4
Knight, R.5
Fierer, N.6
-
21
-
-
15744374419
-
Actinomycetales: characteristics and practical importance
-
Academic Press, London-New York
-
Lacey J. Actinomycetales: characteristics and practical importance. Society for Applied Bacteriology Symposium Series No. 2 1973, Academic Press, London-New York.
-
(1973)
Society for Applied Bacteriology Symposium Series No. 2
-
-
Lacey, J.1
-
22
-
-
67651247607
-
Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale
-
Lauber C.L., Hamady M., Knight R., Fierer N. Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale. Applied and Environmental Microbiology 2009, 75:5111-5120.
-
(2009)
Applied and Environmental Microbiology
, vol.75
, pp. 5111-5120
-
-
Lauber, C.L.1
Hamady, M.2
Knight, R.3
Fierer, N.4
-
23
-
-
77954155092
-
Soil organic carbon stock and carbon efflux in deep soils of desert and oasis
-
Li C.H., Li Y., Tang L.S. Soil organic carbon stock and carbon efflux in deep soils of desert and oasis. Environmental Earth Sciences 2010, 60:549-557.
-
(2010)
Environmental Earth Sciences
, vol.60
, pp. 549-557
-
-
Li, C.H.1
Li, Y.2
Tang, L.S.3
-
24
-
-
84896854341
-
Effect of model of fertilization on microbial abundance and enzyme activity in oasis farmland soil
-
Li C.H., Tang L.S., Jia Z.J., Li Y. Effect of model of fertilization on microbial abundance and enzyme activity in oasis farmland soil. Acta Pedologica Sinica 2012, 49:567-574.
-
(2012)
Acta Pedologica Sinica
, vol.49
, pp. 567-574
-
-
Li, C.H.1
Tang, L.S.2
Jia, Z.J.3
Li, Y.4
-
25
-
-
84880777949
-
The effects of long-term fertilization on the accumulation of organic carbon in the deep soil profile of an oasis farmland
-
Li C.H., Li Y., Tang L.S. The effects of long-term fertilization on the accumulation of organic carbon in the deep soil profile of an oasis farmland. Plant and Soil 2013, 369:645-656.
-
(2013)
Plant and Soil
, vol.369
, pp. 645-656
-
-
Li, C.H.1
Li, Y.2
Tang, L.S.3
-
26
-
-
0002435561
-
Impacts of agricultural practices on subsurface microbial ecology
-
Madsen E. Impacts of agricultural practices on subsurface microbial ecology. Advances in Agronomy 1995, 54:1-67.
-
(1995)
Advances in Agronomy
, vol.54
, pp. 1-67
-
-
Madsen, E.1
-
27
-
-
34047240607
-
Query-Dependent Banding (QDB) for faster RNA similarity searches
-
Nawrocki E.P., Eddy S.R. Query-Dependent Banding (QDB) for faster RNA similarity searches. Plos Computational Biology 2007, 3:e56.
-
(2007)
Plos Computational Biology
, vol.3
-
-
Nawrocki, E.P.1
Eddy, S.R.2
-
28
-
-
26844488070
-
Unexpectedly high bacterial diversity in arctic tundra relative to boreal forest soils. Revealed by serial analysis of ribosomal sequence tags
-
Neufeld J.D., Mohn W.W. Unexpectedly high bacterial diversity in arctic tundra relative to boreal forest soils. Revealed by serial analysis of ribosomal sequence tags. Applied and Environmental Microbiology 2005, 71:5710-5718.
-
(2005)
Applied and Environmental Microbiology
, vol.71
, pp. 5710-5718
-
-
Neufeld, J.D.1
Mohn, W.W.2
-
29
-
-
43149090062
-
Nutrient addition prompts rapid destabilization of organic matter in an Arctic tundra ecosystem
-
Nowinski N.S., Trumbore S.E., Schuur E.A.G., Mack M.C., Shaver G.R. Nutrient addition prompts rapid destabilization of organic matter in an Arctic tundra ecosystem. Ecosystems 2008, 11:16-25.
-
(2008)
Ecosystems
, vol.11
, pp. 16-25
-
-
Nowinski, N.S.1
Trumbore, S.E.2
Schuur, E.A.G.3
Mack, M.C.4
Shaver, G.R.5
-
30
-
-
43449101881
-
Substrate-induced growth and isolation of acidobacteria from acidic sphagnum peat
-
Pankratov T.A., Serkebaeva Y.M., Kulichevskaya I.S., Liesack W., Dedysh S.N. Substrate-induced growth and isolation of acidobacteria from acidic sphagnum peat. The ISME Journal 2008, 2:551-560.
-
(2008)
The ISME Journal
, vol.2
, pp. 551-560
-
-
Pankratov, T.A.1
Serkebaeva, Y.M.2
Kulichevskaya, I.S.3
Liesack, W.4
Dedysh, S.N.5
-
31
-
-
49649101769
-
Functional diversity of soil bacteria as affected by management practices and phenological stage of phaseolus vulgaris
-
Papatheodorou E.M., Efthimiadou E., Stamou G.P. Functional diversity of soil bacteria as affected by management practices and phenological stage of phaseolus vulgaris. European Journal of Soil Biology 2008, 44:429-436.
-
(2008)
European Journal of Soil Biology
, vol.44
, pp. 429-436
-
-
Papatheodorou, E.M.1
Efthimiadou, E.2
Stamou, G.P.3
-
32
-
-
78650358038
-
Consistent effects of N fertilization on soil bacterial communities in contrasting systems
-
Ramirez K.S., Lauber C.L., Knight R., Bradford M.A., Fierer N. Consistent effects of N fertilization on soil bacterial communities in contrasting systems. Ecology 2010, 91:3463-3470.
-
(2010)
Ecology
, vol.91
, pp. 3463-3470
-
-
Ramirez, K.S.1
Lauber, C.L.2
Knight, R.3
Bradford, M.A.4
Fierer, N.5
-
33
-
-
84860133136
-
Resistance of microorganisms to extreme environmental contribution to astrobiology
-
Rampelotto P.H. Resistance of microorganisms to extreme environmental contribution to astrobiology. Sustainability 2010, 2:1602-1623.
-
(2010)
Sustainability
, vol.2
, pp. 1602-1623
-
-
Rampelotto, P.H.1
-
34
-
-
34547800097
-
Pyrosequencing enumerates and contrasts soil microbial diversity
-
Roesch L.F.W., Fulthorpe R.R., Riva A., Casella G., Hadwin A.K.M., Kent A.D., Daroub S.H., Camargo F.A.O., Farmerie W.G., Triplett E.W. Pyrosequencing enumerates and contrasts soil microbial diversity. The ISME Journal 2007, 1:283-290.
-
(2007)
The ISME Journal
, vol.1
, pp. 283-290
-
-
Roesch, L.F.W.1
Fulthorpe, R.R.2
Riva, A.3
Casella, G.4
Hadwin, A.K.M.5
Kent, A.D.6
Daroub, S.H.7
Camargo, F.A.O.8
Farmerie, W.G.9
Triplett, E.W.10
-
35
-
-
70349106289
-
Collapse of beneficial microbial communities and deterioration of soil health: a cause for reduced crop productivity
-
Seneviratne G. Collapse of beneficial microbial communities and deterioration of soil health: a cause for reduced crop productivity. Current Science 2009, 96:633.
-
(2009)
Current Science
, vol.96
, pp. 633
-
-
Seneviratne, G.1
-
36
-
-
84877937058
-
Pyrosequencing-based assessment of the bacteria diversity in surface and subsurface peat layers of a northern wetland, with focus on poorly studied phyla and candidate divisions
-
Serkebaeva Y.M., Kim Y., Liesack W., Dedysh S.N. Pyrosequencing-based assessment of the bacteria diversity in surface and subsurface peat layers of a northern wetland, with focus on poorly studied phyla and candidate divisions. PLoS ONE 2013, 8:e63994.
-
(2013)
PLoS ONE
, vol.8
-
-
Serkebaeva, Y.M.1
Kim, Y.2
Liesack, W.3
Dedysh, S.N.4
-
37
-
-
77955304942
-
Managing irrigation to reduce nutrient leaching in containerized white spruce seedling production
-
Stowe D.C., Lamhamedi M.S., Carles S., Fecteau B., Margolis H.A., Renaud M., Bernier P.Y. Managing irrigation to reduce nutrient leaching in containerized white spruce seedling production. New Forests 2010, 40:185-204.
-
(2010)
New Forests
, vol.40
, pp. 185-204
-
-
Stowe, D.C.1
Lamhamedi, M.S.2
Carles, S.3
Fecteau, B.4
Margolis, H.A.5
Renaud, M.6
Bernier, P.Y.7
-
38
-
-
40849130887
-
Soil microbiological and biochemical properties for assessing the effect of agricultural management practices in Estonian cultivated soils
-
Truu M., Truu J., Ivask M. Soil microbiological and biochemical properties for assessing the effect of agricultural management practices in Estonian cultivated soils. European Journal of Soil Biology 2008, 44:231-237.
-
(2008)
European Journal of Soil Biology
, vol.44
, pp. 231-237
-
-
Truu, M.1
Truu, J.2
Ivask, M.3
-
39
-
-
38649142473
-
The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems
-
van der Heijden M.G., Bardgett R.D., van Straalen N.M. The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems. Ecology Letters 2008, 11:296-310.
-
(2008)
Ecology Letters
, vol.11
, pp. 296-310
-
-
van der Heijden, M.G.1
Bardgett, R.D.2
van Straalen, N.M.3
-
40
-
-
0042920606
-
Substantial labile carbon stocks and microbial activity in deeply weathered soils below a tropical wet forest
-
Veldkamp E., Becker A., Schwendenmann L., Clark D.A., Schulte-Bisping H. Substantial labile carbon stocks and microbial activity in deeply weathered soils below a tropical wet forest. Global Change Biology 2003, 9:1171-1184.
-
(2003)
Global Change Biology
, vol.9
, pp. 1171-1184
-
-
Veldkamp, E.1
Becker, A.2
Schwendenmann, L.3
Clark, D.A.4
Schulte-Bisping, H.5
-
41
-
-
84865584628
-
Microbial community changes along a land-use gradient of desert soil origin
-
Wang B.Z., Zhang C.X., Liu J.L., Zeng X.W., Li F.R., Wu Y.C., Lin X.G., Xiong Z.Q., Xu J., Jia Z.J. Microbial community changes along a land-use gradient of desert soil origin. Pedosphere 2012, 22:593-603.
-
(2012)
Pedosphere
, vol.22
, pp. 593-603
-
-
Wang, B.Z.1
Zhang, C.X.2
Liu, J.L.3
Zeng, X.W.4
Li, F.R.5
Wu, Y.C.6
Lin, X.G.7
Xiong, Z.Q.8
Xu, J.9
Jia, Z.J.10
-
43
-
-
77958542467
-
Horizon-specific bacterial community composition of German grassland soils, as revealed by pyrosequencing-based analysis of 16S rRNA genes
-
Will C., Thurmer A., Wollherr A., Nacke H., Herold N., Schrumpf M., Gutknecht J., Wubet T., Buscot F., Daniel R. Horizon-specific bacterial community composition of German grassland soils, as revealed by pyrosequencing-based analysis of 16S rRNA genes. Applied and Environmental Microbiology 2010, 76:6751-6759.
-
(2010)
Applied and Environmental Microbiology
, vol.76
, pp. 6751-6759
-
-
Will, C.1
Thurmer, A.2
Wollherr, A.3
Nacke, H.4
Herold, N.5
Schrumpf, M.6
Gutknecht, J.7
Wubet, T.8
Buscot, F.9
Daniel, R.10
-
44
-
-
79959596861
-
Autotrophic growth of nitrifying community in an agricultural soil
-
Xia W., Zhang C., Zeng X.W., Feng Y.Z., Weng J.H., Lin X.G., Zhu J.G., Xiong Z.Q., Xu J., Cai Z.C., Jia Z.J. Autotrophic growth of nitrifying community in an agricultural soil. The ISME Journal 2011, 5:1226-1236.
-
(2011)
The ISME Journal
, vol.5
, pp. 1226-1236
-
-
Xia, W.1
Zhang, C.2
Zeng, X.W.3
Feng, Y.Z.4
Weng, J.H.5
Lin, X.G.6
Zhu, J.G.7
Xiong, Z.Q.8
Xu, J.9
Cai, Z.C.10
Jia, Z.J.11
-
45
-
-
78650201242
-
Members of soil bacterial communities sensitive to tillage and crop rotation
-
Yin C.T., Jones K.L., Peterson D.E., Garrett K.A., Hulbert S.H., Paulitz T.C. Members of soil bacterial communities sensitive to tillage and crop rotation. Soil Biology and Biochemistry 2010, 42:2111-2118.
-
(2010)
Soil Biology and Biochemistry
, vol.42
, pp. 2111-2118
-
-
Yin, C.T.1
Jones, K.L.2
Peterson, D.E.3
Garrett, K.A.4
Hulbert, S.H.5
Paulitz, T.C.6
|