-
1
-
-
34447299402
-
Annotated expressed sequence tags (ESTs) from pre-smolt Atlantic salmon (Salmo salar) in a searchable data resource
-
Adzhubei A.A., Vlasova A.V., Hagen-Larsen H., Ruden T.A., Laerdahl J.K., et al. Annotated expressed sequence tags (ESTs) from pre-smolt Atlantic salmon (Salmo salar) in a searchable data resource. BMC Genomics 2007, 8:209.
-
(2007)
BMC Genomics
, vol.8
, pp. 209
-
-
Adzhubei, A.A.1
Vlasova, A.V.2
Hagen-Larsen, H.3
Ruden, T.A.4
Laerdahl, J.K.5
-
2
-
-
77958471357
-
Differential expression analysis for sequence count data
-
Anders S., Huber W. Differential expression analysis for sequence count data. Genome Biology 2010, 11.
-
(2010)
Genome Biology
, vol.11
-
-
Anders, S.1
Huber, W.2
-
3
-
-
2542451958
-
The application of histo-cytopathological biomarkers in marine pollution monitoring: a review
-
Au D.W.T. The application of histo-cytopathological biomarkers in marine pollution monitoring: a review. Marine Pollution Bulletin 2004, 48:817-834.
-
(2004)
Marine Pollution Bulletin
, vol.48
, pp. 817-834
-
-
Au, D.W.T.1
-
4
-
-
0034616533
-
Fragmentation of sea bass populations in the western and eastern Mediterranean as revealed by microsatellite polymorphism
-
Bahri-Sfar L., Lemaire C., Ben Hassine O.K., Bonhomme F. Fragmentation of sea bass populations in the western and eastern Mediterranean as revealed by microsatellite polymorphism. Proceedings of the Royal Society of London. Series B: Biological Sciences 2000, 267:929-935.
-
(2000)
Proceedings of the Royal Society of London. Series B: Biological Sciences
, vol.267
, pp. 929-935
-
-
Bahri-Sfar, L.1
Lemaire, C.2
Ben Hassine, O.K.3
Bonhomme, F.4
-
5
-
-
84876529549
-
The tree of life and a new classification of bony fishes
-
Betancur-R R., Broughton R.E., Wiley E.O., Carpenter K., López J.A., et al. The tree of life and a new classification of bony fishes. PLoS Currents Tree of Life Edition 2013, 1. 10.1371/currents.tol.53ba26640df0ccaee75bb165c8c26288.
-
(2013)
PLoS Currents Tree of Life Edition
, vol.1
-
-
Betancur-R, R.1
Broughton, R.E.2
Wiley, E.O.3
Carpenter, K.4
López, J.A.5
-
6
-
-
33747612427
-
A transcriptomic approach of salinity response in the euryhaline teleost, Dicentrarchus labrax
-
Boutet I., Ky C.L.L., Bonhomme F. A transcriptomic approach of salinity response in the euryhaline teleost, Dicentrarchus labrax. Gene 2006, 379:40-50.
-
(2006)
Gene
, vol.379
, pp. 40-50
-
-
Boutet, I.1
Ky, C.L.L.2
Bonhomme, F.3
-
7
-
-
55949121630
-
A combined AFLP and microsatellite linkage map and pilot comparative genomic analysis of European sea bass Dicentrarchus labrax L
-
Chistiakov D.A., Tsigenopoulos C.S., Lagnel J., Guo Y.M., Hellemans B., et al. A combined AFLP and microsatellite linkage map and pilot comparative genomic analysis of European sea bass Dicentrarchus labrax L. Animal Genetics 2008, 39:623-634.
-
(2008)
Animal Genetics
, vol.39
, pp. 623-634
-
-
Chistiakov, D.A.1
Tsigenopoulos, C.S.2
Lagnel, J.3
Guo, Y.M.4
Hellemans, B.5
-
8
-
-
78149493335
-
Sequencing, de novo annotation and analysis of the first Anguilla anguilla transcriptome: EeelBase opens new perspectives for the study of the critically endangered European eel
-
Coppe A., Pujolar J.M., Maes G.E., Larsen P.F., Hansen M.M., et al. Sequencing, de novo annotation and analysis of the first Anguilla anguilla transcriptome: EeelBase opens new perspectives for the study of the critically endangered European eel. BMC Genomics 2010, 11:635.
-
(2010)
BMC Genomics
, vol.11
, pp. 635
-
-
Coppe, A.1
Pujolar, J.M.2
Maes, G.E.3
Larsen, P.F.4
Hansen, M.M.5
-
9
-
-
84866144893
-
Brain transcriptome variation among behaviorally distinct strains of zebrafish (Danio rerio)
-
Drew R.E., Settles M.L., Churchill E.J., Williams S.M., Balli S., et al. Brain transcriptome variation among behaviorally distinct strains of zebrafish (Danio rerio). BMC Genomics 2012, 13:323.
-
(2012)
BMC Genomics
, vol.13
, pp. 323
-
-
Drew, R.E.1
Settles, M.L.2
Churchill, E.J.3
Williams, S.M.4
Balli, S.5
-
10
-
-
79959300621
-
Applications of next generation sequencing in molecular ecology of non-model organisms
-
Ekblom R., Galindo J. Applications of next generation sequencing in molecular ecology of non-model organisms. Heredity 2011, 107:1-15.
-
(2011)
Heredity
, vol.107
, pp. 1-15
-
-
Ekblom, R.1
Galindo, J.2
-
11
-
-
77953013514
-
Development of an oligo DNA microarray for the European sea bass and its application to expression profiling of jaw deformity
-
Ferraresso S., Milan M., Pellizzari C., Vitulo N., Reinhardt R., et al. Development of an oligo DNA microarray for the European sea bass and its application to expression profiling of jaw deformity. BMC Genomics 2010, 11:354.
-
(2010)
BMC Genomics
, vol.11
, pp. 354
-
-
Ferraresso, S.1
Milan, M.2
Pellizzari, C.3
Vitulo, N.4
Reinhardt, R.5
-
12
-
-
84877249570
-
Exploring the larval transcriptome of the common sole (Solea solea L.)
-
Ferraresso S., Bonaldo A., Parma L., Cinotti S., Massi P., et al. Exploring the larval transcriptome of the common sole (Solea solea L.). BMC Genomics 2013, 14:315.
-
(2013)
BMC Genomics
, vol.14
, pp. 315
-
-
Ferraresso, S.1
Bonaldo, A.2
Parma, L.3
Cinotti, S.4
Massi, P.5
-
13
-
-
42549083248
-
Transcriptome architecture across tissues in the pig
-
Ferraz A.L.J., Ojeda A., Lopez-Bejar M., Fernandes L.T., Castello A., et al. Transcriptome architecture across tissues in the pig. BMC Genomics 2008, 9.
-
(2008)
BMC Genomics
, vol.9
-
-
Ferraz, A.L.J.1
Ojeda, A.2
Lopez-Bejar, M.3
Fernandes, L.T.4
Castello, A.5
-
14
-
-
79954580291
-
Sequencing and characterization of the guppy (Poecilia reticulata) transcriptome
-
Fraser B.A., Weadick C.J., Janowitz I., Rodd F.H., Hughes K.A. Sequencing and characterization of the guppy (Poecilia reticulata) transcriptome. BMC Genomics 2011, 12:202.
-
(2011)
BMC Genomics
, vol.12
, pp. 202
-
-
Fraser, B.A.1
Weadick, C.J.2
Janowitz, I.3
Rodd, F.H.4
Hughes, K.A.5
-
15
-
-
80054760711
-
Effects of the total replacement of fish-based diet with plant-based diet on the hepatic transcriptome of two European sea bass (Dicentrarchus labrax) half-sibfamilies showing different growth rates with the plant-based diet
-
Geay F., Ferraresso S., Zambonino-Infante J.L., Bargelloni L., Quentel C., et al. Effects of the total replacement of fish-based diet with plant-based diet on the hepatic transcriptome of two European sea bass (Dicentrarchus labrax) half-sibfamilies showing different growth rates with the plant-based diet. BMC Genomics 2011, 23:522.
-
(2011)
BMC Genomics
, vol.23
, pp. 522
-
-
Geay, F.1
Ferraresso, S.2
Zambonino-Infante, J.L.3
Bargelloni, L.4
Quentel, C.5
-
16
-
-
79952902000
-
The pineal complex of the European sea bass Dicentrarchus labrax: I. Histological, immunohistochemical and qPCR study
-
Herrera-Pérez P., Servilia A., Rendón M.C., Sánchez-Vázquez F.J., Falcón J., et al. The pineal complex of the European sea bass Dicentrarchus labrax: I. Histological, immunohistochemical and qPCR study. Journal of Chemical Neuroanatomy 2011, 41:170-180.
-
(2011)
Journal of Chemical Neuroanatomy
, vol.41
, pp. 170-180
-
-
Herrera-Pérez, P.1
Servilia, A.2
Rendón, M.C.3
Sánchez-Vázquez, F.J.4
Falcón, J.5
-
17
-
-
84859715310
-
Characterization of common carp transcriptome: sequencing, de novo assembly, annotation and comparative genomics
-
Ji P.F., Liu G.M., Xu J., Wang X.M., Li J.T., et al. Characterization of common carp transcriptome: sequencing, de novo assembly, annotation and comparative genomics. PLoS One 2012, 7:e35152.
-
(2012)
PLoS One
, vol.7
-
-
Ji, P.F.1
Liu, G.M.2
Xu, J.3
Wang, X.M.4
Li, J.T.5
-
18
-
-
84862234514
-
Ensembl Genomes: an integrative resource for genome-scale data from non-vertebrate species
-
Kersey P.J., Staines D.M., Lawson D., Kulesha E., Derwent P., et al. Ensembl Genomes: an integrative resource for genome-scale data from non-vertebrate species. Nucleic Acids Research 2012, 40:D91-D97.
-
(2012)
Nucleic Acids Research
, vol.40
-
-
Kersey, P.J.1
Staines, D.M.2
Lawson, D.3
Kulesha, E.4
Derwent, P.5
-
19
-
-
84875527393
-
RNA sequencing reveals small RNAs differentially expressed between incipient Japanese threespine sticklebacks
-
Kitano J., Yoshida K., Suzuki Y. RNA sequencing reveals small RNAs differentially expressed between incipient Japanese threespine sticklebacks. BMC Genomics 2013, 14.
-
(2013)
BMC Genomics
, vol.14
-
-
Kitano, J.1
Yoshida, K.2
Suzuki, Y.3
-
20
-
-
68849111432
-
Characterization of the Zoarces viviparus liver transcriptome using massively parallel pyrosequencing
-
Kristiansson E., Asker N., Forlin L., Larsson D.G.J. Characterization of the Zoarces viviparus liver transcriptome using massively parallel pyrosequencing. BMC Genomics 2009, 10:345.
-
(2009)
BMC Genomics
, vol.10
, pp. 345
-
-
Kristiansson, E.1
Asker, N.2
Forlin, L.3
Larsson, D.G.J.4
-
21
-
-
77649287723
-
The European sea bass Dicentrarchus labrax genome puzzle: comparative BAC-mapping and low coverage shotgun sequencing
-
Kuhl H., Beck A., Wozniak G., Canario A.V.M., Volckaert F.A.M., et al. The European sea bass Dicentrarchus labrax genome puzzle: comparative BAC-mapping and low coverage shotgun sequencing. BMC Genomics 2010, 11:68.
-
(2010)
BMC Genomics
, vol.11
, pp. 68
-
-
Kuhl, H.1
Beck, A.2
Wozniak, G.3
Canario, A.V.M.4
Volckaert, F.A.M.5
-
22
-
-
0034047552
-
Do discrepancies between microsatellite and allozyme variation reveal differential selection between sea and lagoon in the sea bass (Dicentrarchus labrax)?
-
Lemaire C., Allegrucci G., Naciri M., Bahri-Sfar L., Kara H., et al. Do discrepancies between microsatellite and allozyme variation reveal differential selection between sea and lagoon in the sea bass (Dicentrarchus labrax)?. Molecular Ecology 2000, 9:457-467.
-
(2000)
Molecular Ecology
, vol.9
, pp. 457-467
-
-
Lemaire, C.1
Allegrucci, G.2
Naciri, M.3
Bahri-Sfar, L.4
Kara, H.5
-
23
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li H., Durbin R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 2009, 25:1754-1760.
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
24
-
-
33745634395
-
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
-
Li W.Z., Godzik A. Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics 2006, 22:1658-1659.
-
(2006)
Bioinformatics
, vol.22
, pp. 1658-1659
-
-
Li, W.Z.1
Godzik, A.2
-
25
-
-
0034731311
-
A new subfamily of high molecular mass CDC2-related kinases with PITAI/VRE motifs
-
Marques F., Moreau J.L., Peaucellier G., Lozano J.C., Schatt P., et al. A new subfamily of high molecular mass CDC2-related kinases with PITAI/VRE motifs. Biochemical and Biophysical Research Communications 2000, 279:832-837.
-
(2000)
Biochemical and Biophysical Research Communications
, vol.279
, pp. 832-837
-
-
Marques, F.1
Moreau, J.L.2
Peaucellier, G.3
Lozano, J.C.4
Schatt, P.5
-
26
-
-
72249109819
-
Risk-taking behaviour variation over time in sea bass Dicentrarchus labrax: effects of day-night alternation, fish phenotypic characteristics and selection for growth
-
Millot S., Bégout M.L., Chatain B. Risk-taking behaviour variation over time in sea bass Dicentrarchus labrax: effects of day-night alternation, fish phenotypic characteristics and selection for growth. Journal of Fish Biology 2009, 75:1733-1749.
-
(2009)
Journal of Fish Biology
, vol.75
, pp. 1733-1749
-
-
Millot, S.1
Bégout, M.L.2
Chatain, B.3
-
27
-
-
34547588704
-
KAAS: an automatic genome annotation and pathway reconstruction server
-
Moriya Y., Itoh M., Okuda S., Yoshizawa A., Kanehisa M. KAAS: an automatic genome annotation and pathway reconstruction server. Nucleic Acids Research 2007, 35:W182-W185.
-
(2007)
Nucleic Acids Research
, vol.35
-
-
Moriya, Y.1
Itoh, M.2
Okuda, S.3
Yoshizawa, A.4
Kanehisa, M.5
-
28
-
-
27744553278
-
Differential freshwater adaptation in juvenile sea-bass Dicentrarchus labrax: involvement of gills and urinary system
-
Nebel C., Romestand B., Nègre-Sadargues G., Grousset E., Aujoulat F., et al. Differential freshwater adaptation in juvenile sea-bass Dicentrarchus labrax: involvement of gills and urinary system. Journal of Experimental Biology 2005, 208:3859-3871.
-
(2005)
Journal of Experimental Biology
, vol.208
, pp. 3859-3871
-
-
Nebel, C.1
Romestand, B.2
Nègre-Sadargues, G.3
Grousset, E.4
Aujoulat, F.5
-
29
-
-
0037460985
-
TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets
-
Pertea G., Huang X.Q., Liang F., Antonescu V., Sultana R., et al. TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets. Bioinformatics 2003, 19:651-652.
-
(2003)
Bioinformatics
, vol.19
, pp. 651-652
-
-
Pertea, G.1
Huang, X.Q.2
Liang, F.3
Antonescu, V.4
Sultana, R.5
-
30
-
-
77957904684
-
Rapid dopaminergic modulation of the fish hypothalamic transcriptome and proteome
-
Popesku J.T., Martyniuk C.J., Denslow N.D., Trudeau V.L. Rapid dopaminergic modulation of the fish hypothalamic transcriptome and proteome. PLoS One 2010, 5:e12338.
-
(2010)
PLoS One
, vol.5
-
-
Popesku, J.T.1
Martyniuk, C.J.2
Denslow, N.D.3
Trudeau, V.L.4
-
31
-
-
77951936990
-
Mining transcriptome sequences towards identifying adaptive single nucleotide polymorphisms in lake whitefish species pairs (Coregonus spp. Salmonidae)
-
Renaut S., Nolte A.W., Bernatchez L. Mining transcriptome sequences towards identifying adaptive single nucleotide polymorphisms in lake whitefish species pairs (Coregonus spp. Salmonidae). Molecular Ecology 2010, 19:115-131.
-
(2010)
Molecular Ecology
, vol.19
, pp. 115-131
-
-
Renaut, S.1
Nolte, A.W.2
Bernatchez, L.3
-
32
-
-
0034201441
-
EMBOSS: the European Molecular Biology Open Software Suite
-
Rice P., Longden I., Bleasby A. EMBOSS: the European Molecular Biology Open Software Suite. Trends in Genetics 2000, 16:276-277.
-
(2000)
Trends in Genetics
, vol.16
, pp. 276-277
-
-
Rice, P.1
Longden, I.2
Bleasby, A.3
-
33
-
-
0031756957
-
Annual rhythms of demand-feeding activity in sea bass: evidence of a seasonal phase inversion of the diel feeding pattern
-
Sánchez-Vázquez F.J., Azzaydi M., Martínez F.J., Zamora S., Madrid J.A. Annual rhythms of demand-feeding activity in sea bass: evidence of a seasonal phase inversion of the diel feeding pattern. Chronobiology International 1998, 15:607-622.
-
(1998)
Chronobiology International
, vol.15
, pp. 607-622
-
-
Sánchez-Vázquez, F.J.1
Azzaydi, M.2
Martínez, F.J.3
Zamora, S.4
Madrid, J.A.5
-
34
-
-
44949092444
-
Cloning and retinal expression of melatonin receptors in the European sea bass, Dicentrarchus labrax
-
Sauzet S., Besseau L., Herrera Peréz P., Coves D., Chatain B., et al. Cloning and retinal expression of melatonin receptors in the European sea bass, Dicentrarchus labrax. General and Comparative Endocrinology 2008, 157:186-195.
-
(2008)
General and Comparative Endocrinology
, vol.157
, pp. 186-195
-
-
Sauzet, S.1
Besseau, L.2
Herrera Peréz, P.3
Coves, D.4
Chatain, B.5
-
35
-
-
84859768479
-
Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels
-
Schulz M.H., Zerbino D.R., Vingron M., Birney E. Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels. Bioinformatics 2012, 28:1086-1092.
-
(2012)
Bioinformatics
, vol.28
, pp. 1086-1092
-
-
Schulz, M.H.1
Zerbino, D.R.2
Vingron, M.3
Birney, E.4
-
36
-
-
41149167170
-
Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing
-
Vera J.C., Wheat C.W., Fescemyer H.W., Frilander M.J., Crawford D.L., et al. Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing. Molecular Ecology 2008, 17:1636-1647.
-
(2008)
Molecular Ecology
, vol.17
, pp. 1636-1647
-
-
Vera, J.C.1
Wheat, C.W.2
Fescemyer, H.W.3
Frilander, M.J.4
Crawford, D.L.5
-
37
-
-
84878009771
-
Behavioral and neurogenomic transcriptome changes in wild-derived zebrafish with fluoxetine treatment
-
Wong R.Y., Oxendine S.E., Godwin J. Behavioral and neurogenomic transcriptome changes in wild-derived zebrafish with fluoxetine treatment. BMC Genomics 2013, 14:348.
-
(2013)
BMC Genomics
, vol.14
, pp. 348
-
-
Wong, R.Y.1
Oxendine, S.E.2
Godwin, J.3
-
38
-
-
82255164223
-
Analysis of the Asian seabass transcriptome based on expressed sequence tags
-
Xia J.H., He X.P., Bai Z.Y., Lin G., Yue G.H. Analysis of the Asian seabass transcriptome based on expressed sequence tags. DNA Research 2011, 18:513-522.
-
(2011)
DNA Research
, vol.18
, pp. 513-522
-
-
Xia, J.H.1
He, X.P.2
Bai, Z.Y.3
Lin, G.4
Yue, G.H.5
-
39
-
-
33747846582
-
WEGO: a web tool for plotting GO annotations
-
Ye J., Fang L., Zheng H.K., Zhang Y., Chen J., et al. WEGO: a web tool for plotting GO annotations. Nucleic Acids Research 2006, 34:W293-W297.
-
(2006)
Nucleic Acids Research
, vol.34
-
-
Ye, J.1
Fang, L.2
Zheng, H.K.3
Zhang, Y.4
Chen, J.5
-
40
-
-
84862495884
-
Transcriptomic characterization of the larval stage in gilthead seabream (Sparus aurata) by 454 pyrosequencing
-
Yufera M., Halm S., Beltran S., Fuste B., Planas J.V., et al. Transcriptomic characterization of the larval stage in gilthead seabream (Sparus aurata) by 454 pyrosequencing. Marine Biotechnology (New York, N.Y.) 2012, 14:423-435.
-
(2012)
Marine Biotechnology (New York, N.Y.)
, vol.14
, pp. 423-435
-
-
Yufera, M.1
Halm, S.2
Beltran, S.3
Fuste, B.4
Planas, J.V.5
|