Phylogenetic analysis of porcine epidemic diarrhea virus (PEDV) field strains in central China based on the ORF3 gene and the main neutralization epitopes

Archives of Virology

Volumn 159, Issue 5, 2014, Pages 1057-1065

  Li, Renfeng ^a,b,c   Qiao, Songlin ^b   Yang, Yanyan ^b   Su, Yunfang ^b   Zhao, Pu ^c   Zhou, Enmin ^a   Zhang, Gaiping ^d  

^a NORTHWEST A F UNIVERSITY   (China)

^b INSTITUTE OF PLANT PROTECTION   (China)

^c HENAN INSTITUTE OF SCIENCE AND TECHNOLOGY   (China)

^d HENAN AGRICULTURAL UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

PORCINE EPIDEMIC DIARRHEA VIRUS; SUIDAE; SUS;

VIRUS PROTEIN;

ANIMAL; ANIMAL DISEASE; ARTICLE; CHINA; CORONAVIRUS INFECTION; GENE EXPRESSION REGULATION; GENETIC VARIABILITY; GENETICS; METABOLISM; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; PHYSIOLOGY; PORCINE EPIDEMIC DIARRHEA VIRUS; SWINE; SWINE DISEASE; VIROLOGY;

ANIMALS; CHINA; CORONAVIRUS INFECTIONS; GENE EXPRESSION REGULATION, VIRAL; GENETIC VARIATION; MOLECULAR SEQUENCE DATA; PHYLOGENY; PORCINE EPIDEMIC DIARRHEA VIRUS; SWINE; SWINE DISEASES; VIRAL PROTEINS;

EID: 84899940056     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-013-1929-7     Document Type: Article

References (26)

1. Bridgen A, Duarte M, Tobler K, Laude H, Ackermann M (1993) Sequence determination of the nucleocapsid protein gene of the porcine epidemic diarrhoea virus confirms that this virus is a coronavirus related to human coronavirus 229E and porcine transmissible gastroenteritis virus. J Gen Virol 74: 1795-1804.
2. Pensaert MB, de Bouck P (1978) A new coronavirus-like particles associated with diarrhea in swine. Arch Virol 58: 243-247.
3. Duy DT, Toan NT, Puranaveja S, Thanawongnuwech R (2011) Genetic characterization of porcine epidemic diarrhea virus PEDV isolates from southern Vietnam during 2009-2010 outbreaks. Thai J Vet Med 41: 55-64.
4. Park SJ, Kim HK, Moon HJ, Song DS, Rho SM, Han JY, Nguyen VG, Park BK (2010) Molecular detection of porcine kobuviruses in pigs in Korea and their association with diarrhea. Arch Virol 155: 1803-1811.
5. Puranaveja S, Poolperm P, Lertwatcharasarakul P, Kesdaengsakonwut S, Boonsoongnern A, Urairong K, Kitikoon P, Choojai P, Kedkovid R, Teankum K, Thanawongnuwech R (2009) Chinese-like 19 strain of porcine epidemic diarrhea virus, Thailand. Emerg Infect Dis 15: 1112-1115.
6. Xuan H, Xing D, Wang D, Zhu W, Zhao F, Gong H (1984) Study on the culture of porcine epidemic diarrhea virus adapted to fetal porcine intestine primary cell monolayer. Chin J Vet Sci 4: 202-208.
7. Gao Y, Kou Q, Ge X, Zhou L, Guo X, Yang H (2013) Phylogenetic analysis of porcine epidemic diarrhea virus field strains prevailing recently in China. Arch Virol 158: 711-715.
8. Song DS, Park BK (2012) Porcine epidemic diarrhea virus: a comprehensive review of molecular epidemiology, diagnosis, and vaccines. Virus Genes 44: 167-175.
9. Song DS, Yang JS, Oh JS, Han JH, Park BK (2003) Differentiation of a Vero cell adapted porcine epidemic diarrhea virus from Korean field strains by restriction fragment length polymorphism analysis of ORF 3. Vaccine 21: 1833-1842.
10. Pospischil A, Stuedli A, Kiupel M (2002) Diagnostic notes: update on porcine epidemic diarrhea. J Swine Health Prod 10: 81-85.
11. Chang SH, Bae JL, Kang TJ, Kim J, Chung GH, Lim CW, Laude H, Yang MS, Jang YS (2002) Identification of the epitope region capable of inducing neutralizing antibodies against the porcine epidemic diarrhea virus. Mol Cells 14: 295-299.
12. Sun D, Feng L, Shi H, Chen J, Cui X, Chen H, Liu S, Tong Y, Wang Y, Tong G (2008) Identification of two novel B cell epitopes on porcine epidemic diarrhea virus spike protein. Vet Microbiol 131: 73-81.
13. Godet M, Grosclaude J, Delmas B, Laude H (1994) Major receptor-binding and neutralization epitope are located within the same domain of the transmissible gastroenteritis virus (coronavirus) spike protein. J Virol 68: 8008-8016.
14. Sun DB, Feng L, Shi HY, Chen JF, Liu SW, Chen HY, Wang YF (2007) Spike protein region (aa 636-789) of porcine epidemic diarrhea virus is essential for induction of neutralizing antibodies. Acta Virol 51: 149-156.
15. Park SJ, Moon HJ, Yang JS, Lee CS, Song DS, Kang BK, Park BK (2007) Sequence analysis of the partial spike glycoprotein gene of porcine epidemic diarrhea viruses isolated in Korea. Virus Genes 35: 321-332.
16. Chen J, Wang C, Shi H, Qiu H, Liu S, Chen X, Zhang Z, Feng L (2010) Molecular epidemiology of porcine epidemic diarrhea virus in China. Arch Virol 155: 1471-1476.
17. Chen X, Yang J, Yu F, Ge J, Lin T, Song T (2012) Molecular characterization and phylogenetic analysis of porcine epidemic diarrhea virus (PEDV) samples from field cases in Fujian, China. Virus Genes 45: 499-507.
18. Li W, Li H, Liu Y, Pan Y, Deng F, Song Y, Tang X, He Q (2012) New variants of porcine epidemic diarrhea virus, China. Emerg Infect Dis 18: 1350-1353.
19. Sun RQ, Cai RJ, Chen YQ, Liang PS, Chen DK, Song CX (2012) Outbreak of porcine epidemic diarrhea in suckling piglets, China. Emerg Infect Dis 18: 161-163.
20. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28: 2731-2739.
21. Larsen JE, Lund O, Nielsen M (2006) Improved method for predicting linear B-cell epitopes. Immunome Res 2: 2.
22. Zhang Q, Hu R, Tang X, Wu C, He Q, Zhao Z, Chen H, Wu B (2013) Occurrence and investigation of enteric viral infections in pigs with diarrhea in China. Arch Virol 158: 1631-1636.
23. Shirato K, Matsuyama S, Ujike M, Taguchi F (2011) Role of proteases in the release of porcine epidemic diarrhea virus from infected cells. J Virol 85: 7872-7880.
24. Park SJ, Kim HK, Song DS, Moon HJ, Park BK (2011) Molecular characterization and phylogenetic analysis of porcine epidemic diarrhea virus (PEDV) field isolates in Korea. Arch Virol 156: 577-585.
25. Yang X, Huo JY, Chen L, Zheng FM, Chang HT, Zhao J, Wang XW, Wang C-Q (2013) Genetic variation analysis of reemerging porcine epidemic diarrhea virus prevailing in central China from 2010 to 2011. Virus Genes 46: 337-344.
26. Li Z, Chen F, Yuan Y, Zeng X, Wei Z, Zhu L, Sun B, Xie Q, Cao Y, Xue C, Ma J, Bee Y (2013) Sequence and phylogenetic analysis of nucleocapsid genes of porcine epidemic diarrhea virus (PEDV) strains in China. Arch Virol 158: 1267-1273.