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Volumn 230, Issue , 2014, Pages 5-19

Command-line cellular electrophysiology for conventional and real-time closed-loop experiments

Author keywords

Active Electrode Compensation; Cellular neurobiology; Closed loop; Command line interface; Current clamp; Dynamic clamp; Electrophysiology; Experimental control; Hybrid experiments; Neuroinformatics; Real time computing; Scripted electrophysiology

Indexed keywords

ARTICLE; AUTOMATION; COMPUTER PROGRAM; CONDUCTANCE; CONTROLLED STUDY; CURRENT CLAMP TECHNIQUE; DATA ANALYSIS; DECOMPOSITION; ELECTRIC POTENTIAL; ELECTROPHYSIOLOGY; NERVE CELL; PRIORITY JOURNAL; STANDARD; STIMULATION; WAVEFORM; WORKFLOW; ACTION POTENTIAL; ALGORITHM; ANIMAL; BIOLOGICAL MODEL; CEREBELLUM CORTEX; COMPARATIVE STUDY; COMPUTER INTERFACE; COMPUTER SIMULATION; ELECTROSTIMULATION; PATCH CLAMP TECHNIQUE; PHYSIOLOGY; PROCEDURES; PYRAMIDAL NERVE CELL; SIGNAL PROCESSING; SOMATOSENSORY CORTEX; TIME; TISSUE CULTURE TECHNIQUE; WISTAR RAT;

EID: 84899877957     PISSN: 01650270     EISSN: 1872678X     Source Type: Journal    
DOI: 10.1016/j.jneumeth.2014.04.003     Document Type: Article
Times cited : (24)

References (54)
  • 1
    • 34948899399 scopus 로고    scopus 로고
    • Real-time closed-loop electrophysiology: towards new frontiers in in vitro investigations in the neurosciences
    • Arsiero M., Lüscher H., Giugliano M. Real-time closed-loop electrophysiology: towards new frontiers in in vitro investigations in the neurosciences. Arch Ital Biol 2007, 145:193-209.
    • (2007) Arch Ital Biol , vol.145 , pp. 193-209
    • Arsiero, M.1    Lüscher, H.2    Giugliano, M.3
  • 2
    • 33947515167 scopus 로고    scopus 로고
    • The impact of input fluctuations on the frequency-current relationships of layer 5 pyramidal neurons in the rat medial prefrontal cortex
    • Arsiero M., Lüscher H.R., Lundstrom B.N., Giugliano M. The impact of input fluctuations on the frequency-current relationships of layer 5 pyramidal neurons in the rat medial prefrontal cortex. J Neurosci 2007, 27:3274-3284.
    • (2007) J Neurosci , vol.27 , pp. 3274-3284
    • Arsiero, M.1    Lüscher, H.R.2    Lundstrom, B.N.3    Giugliano, M.4
  • 4
    • 34948897019 scopus 로고    scopus 로고
    • From response to stimulus: adaptive sampling in sensory physiology
    • Benda J., Gollisch T., Machens C.K., Herz A.V. From response to stimulus: adaptive sampling in sensory physiology. Curr Opin Neurobiol 2007, 17:430-436.
    • (2007) Curr Opin Neurobiol , vol.17 , pp. 430-436
    • Benda, J.1    Gollisch, T.2    Machens, C.K.3    Herz, A.V.4
  • 5
    • 77957929287 scopus 로고    scopus 로고
    • Brief bursts self-inhibit and correlate the pyramidal network
    • Berger T.K., Silberberg G., Perin R., Markram H. Brief bursts self-inhibit and correlate the pyramidal network. PLoS Biol 2010, 8.
    • (2010) PLoS Biol , pp. 8
    • Berger, T.K.1    Silberberg, G.2    Perin, R.3    Markram, H.4
  • 6
    • 41049099540 scopus 로고    scopus 로고
    • Effects of imperfect dynamic clamp: computational and experimental results
    • Bettencourt J., Lillis K., Stupin L., White J. Effects of imperfect dynamic clamp: computational and experimental results. J Neurosci Meth 2008, 169:282-289.
    • (2008) J Neurosci Meth , vol.169 , pp. 282-289
    • Bettencourt, J.1    Lillis, K.2    Stupin, L.3    White, J.4
  • 7
    • 0034657213 scopus 로고    scopus 로고
    • Multiple site silicon-based probes for chronic recordings in freely moving rats: implantation, recording and histological verification
    • Bragin A., Hetke J., Wilson C., Anderson D., J.E.Buzski G. Multiple site silicon-based probes for chronic recordings in freely moving rats: implantation, recording and histological verification. J Neurosci Meth 2000, 98:77-82.
    • (2000) J Neurosci Meth , vol.98 , pp. 77-82
    • Bragin, A.1    Hetke, J.2    Wilson, C.3    Anderson, D.4    J.E.Buzski, G.5
  • 9
    • 48749103873 scopus 로고    scopus 로고
    • High-resolution intracellular recordings using a real-time computational model of the electrode
    • Brette R., Piwkowska Z., Monier C., Rudolph-Lilith M., Fournier J., Levy M., et al. High-resolution intracellular recordings using a real-time computational model of the electrode. Neuron 2008, 59:379-391.
    • (2008) Neuron , vol.59 , pp. 379-391
    • Brette, R.1    Piwkowska, Z.2    Monier, C.3    Rudolph-Lilith, M.4    Fournier, J.5    Levy, M.6
  • 10
    • 11144355852 scopus 로고    scopus 로고
    • Large-scale recording of neuronal ensembles
    • Buzsáki G. Large-scale recording of neuronal ensembles. Nat Neurosci 2004, 7:446-451.
    • (2004) Nat Neurosci , vol.7 , pp. 446-451
    • Buzsáki, G.1
  • 11
    • 0037104631 scopus 로고    scopus 로고
    • Gain modulation from background synaptic input
    • Chance F.S., Abbott L.F., Reyes A.D. Gain modulation from background synaptic input. Neuron 2002, 35:773-782.
    • (2002) Neuron , vol.35 , pp. 773-782
    • Chance, F.S.1    Abbott, L.F.2    Reyes, A.D.3
  • 12
    • 50549088826 scopus 로고    scopus 로고
    • The origin of the complex spike in cerebellar Purkinje cells
    • Davie J.T., Clark B.A., Häusser M. The origin of the complex spike in cerebellar Purkinje cells. J Neurosci 2008, 28:7599-7609.
    • (2008) J Neurosci , vol.28 , pp. 7599-7609
    • Davie, J.T.1    Clark, B.A.2    Häusser, M.3
  • 14
    • 0035834798 scopus 로고    scopus 로고
    • Fluctuating synaptic conductances recreate in vivo-like activity in neocortical neurons
    • Destexhe A., Rudolph M., Fellous J., Sejnowski T. Fluctuating synaptic conductances recreate in vivo-like activity in neocortical neurons. Neuroscience 2001, 107:13-24.
    • (2001) Neuroscience , vol.107 , pp. 13-24
    • Destexhe, A.1    Rudolph, M.2    Fellous, J.3    Sejnowski, T.4
  • 15
    • 0141499222 scopus 로고    scopus 로고
    • The high-conductance state of neocortical neurons in vivo
    • Destexhe A., Rudolph M., Paré D. The high-conductance state of neocortical neurons in vivo. Nat Rev Neurosci 2003, 4:739-751.
    • (2003) Nat Rev Neurosci , vol.4 , pp. 739-751
    • Destexhe, A.1    Rudolph, M.2    Paré, D.3
  • 16
    • 85088891526 scopus 로고    scopus 로고
    • A novel multiple objective optimization framework for constraining conductance-based neuron models by experimental data
    • Druckmann S., Banitt Y., Gidon A., Schürmann F., Markram H., Segev I. A novel multiple objective optimization framework for constraining conductance-based neuron models by experimental data. Front Neurosci 2007, 1:7-18.
    • (2007) Front Neurosci , vol.1 , pp. 7-18
    • Druckmann, S.1    Banitt, Y.2    Gidon, A.3    Schürmann, F.4    Markram, H.5    Segev, I.6
  • 17
    • 3342881154 scopus 로고    scopus 로고
    • Searching for optimal sensory signals: iterative stimulus reconstruction in closed-loop experiments
    • Edin F., Machens C.K., Schütze H., Herz A.V.M. Searching for optimal sensory signals: iterative stimulus reconstruction in closed-loop experiments. J Comput Neurosci 2004, 17:47-56.
    • (2004) J Comput Neurosci , vol.17 , pp. 47-56
    • Edin, F.1    Machens, C.K.2    Schütze, H.3    Herz, A.V.M.4
  • 18
    • 0024326213 scopus 로고
    • A thin slice preparation for patch clamp recordings from neurones of the mammalian central nervous system
    • Edwards F.A., Konnerth A., Sakmann B., Takahashi T. A thin slice preparation for patch clamp recordings from neurones of the mammalian central nervous system. Pflügers Archiv Eur J Physiol 1989, 414:600-612.
    • (1989) Pflügers Archiv Eur J Physiol , vol.414 , pp. 600-612
    • Edwards, F.A.1    Konnerth, A.2    Sakmann, B.3    Takahashi, T.4
  • 19
    • 0032186220 scopus 로고    scopus 로고
    • Linearization of F-I curves by adaptation
    • Ermentrout B. Linearization of F-I curves by adaptation. Neural Comput 1998, 10:1721-1729.
    • (1998) Neural Comput , vol.10 , pp. 1721-1729
    • Ermentrout, B.1
  • 20
    • 36149010770 scopus 로고
    • Ionization yield of radiations. II. The fluctuations of the number of ions
    • Fano U. Ionization yield of radiations. II. The fluctuations of the number of ions. Phys Rev 1947, 72:26.
    • (1947) Phys Rev , vol.72 , pp. 26
    • Fano, U.1
  • 21
    • 0142250863 scopus 로고    scopus 로고
    • Regulation of persistent activity by background inhibition in an in vitro model of a cortical microcircuit
    • Fellous J.M., Sejnowski T.J. Regulation of persistent activity by background inhibition in an in vitro model of a cortical microcircuit. Cereb Cortex 2003, 13:1232-1241.
    • (2003) Cereb Cortex , vol.13 , pp. 1232-1241
    • Fellous, J.M.1    Sejnowski, T.J.2
  • 22
    • 84883445202 scopus 로고    scopus 로고
    • HDF5: A new file format and I/O library for scientific data management
    • Astronomical Society of the Pacific, D.M. Mehringer, R.L. Plante, D.A. Roberts (Eds.)
    • Folk M., Cheng A., McGrath R.E. HDF5: A new file format and I/O library for scientific data management. Astronomical data analysis software and systems VIII proceedings 1999, Astronomical Society of the Pacific. D.M. Mehringer, R.L. Plante, D.A. Roberts (Eds.).
    • (1999) Astronomical data analysis software and systems VIII proceedings
    • Folk, M.1    Cheng, A.2    McGrath, R.E.3
  • 23
    • 78649735564 scopus 로고    scopus 로고
    • Dynamics of excitability over extended timescales in cultured cortical neurons
    • Gal A., Eytan D., Wallach A., Sandler M., Schiller J., Marom S. Dynamics of excitability over extended timescales in cultured cortical neurons. J Neurosci 2010, 30:16332-16342.
    • (2010) J Neurosci , vol.30 , pp. 16332-16342
    • Gal, A.1    Eytan, D.2    Wallach, A.3    Sandler, M.4    Schiller, J.5    Marom, S.6
  • 24
    • 0029623039 scopus 로고
    • Tetrodes markedly improve the reliability and yield of multiple single-unit isolation from multi-unit recordings in cat striate cortex
    • Gray C.M., Maldonado P.E., Wilson M., McNaughton B. Tetrodes markedly improve the reliability and yield of multiple single-unit isolation from multi-unit recordings in cat striate cortex. J Neurosci Meth 1995, 63:43-54.
    • (1995) J Neurosci Meth , vol.63 , pp. 43-54
    • Gray, C.M.1    Maldonado, P.E.2    Wilson, M.3    McNaughton, B.4
  • 25
    • 84863918721 scopus 로고    scopus 로고
    • Open is not enough. Lets take the next step: an integrated, community-driven computing platform for neuroscience
    • Halchenko Y.O., Hanke M. Open is not enough. Lets take the next step: an integrated, community-driven computing platform for neuroscience. Front Neuroinf 2012, 6.
    • (2012) Front Neuroinf , vol.6
    • Halchenko, Y.O.1    Hanke, M.2
  • 26
    • 0019441262 scopus 로고
    • Improved patch-clamp techniques for high-resolution current recording from cells and cell-free membrane patches
    • Hamill O.P., Marty A., Neher E., Sakmann B., Sigworth F. Improved patch-clamp techniques for high-resolution current recording from cells and cell-free membrane patches. Pflügers Archiv Eur J Physiol 1981, 391:85-100.
    • (1981) Pflügers Archiv Eur J Physiol , vol.391 , pp. 85-100
    • Hamill, O.P.1    Marty, A.2    Neher, E.3    Sakmann, B.4    Sigworth, F.5
  • 27
    • 0034663326 scopus 로고    scopus 로고
    • Postsynaptic variability of firing in rat cortical neurons: the roles of input synchronization and synaptic NMDA receptor conductance
    • Harsch A., Robinson H.P. Postsynaptic variability of firing in rat cortical neurons: the roles of input synchronization and synaptic NMDA receptor conductance. J Neurosci 2000, 20:6181-6192.
    • (2000) J Neurosci , vol.20 , pp. 6181-6192
    • Harsch, A.1    Robinson, H.P.2
  • 28
    • 0037086859 scopus 로고    scopus 로고
    • A three-dimensional multi-electrode array for multi-site stimulation and recording in acute brain slices
    • Heuschkel M.O., Fejtl M., Raggenbass M., Bertrand D., Renaud P. A three-dimensional multi-electrode array for multi-site stimulation and recording in acute brain slices. J Neurosci Meth 2002, 114:135-148.
    • (2002) J Neurosci Meth , vol.114 , pp. 135-148
    • Heuschkel, M.O.1    Fejtl, M.2    Raggenbass, M.3    Bertrand, D.4    Renaud, P.5
  • 29
    • 35649001607 scopus 로고
    • A quantitative description of membrane current and its application to conduction and excitation in nerve
    • Hodgkin A., Huxley A. A quantitative description of membrane current and its application to conduction and excitation in nerve. J Physiol London 1952, 117:500-544.
    • (1952) J Physiol London , vol.117 , pp. 500-544
    • Hodgkin, A.1    Huxley, A.2
  • 30
    • 76949115555 scopus 로고
    • Measurement of current-voltage relations in the membrane of the giant axon of Loligo
    • Hodgkin A.L., Huxley A.F., Katz B. Measurement of current-voltage relations in the membrane of the giant axon of Loligo. J Physiol 1952, 116:424-448.
    • (1952) J Physiol , vol.116 , pp. 424-448
    • Hodgkin, A.L.1    Huxley, A.F.2    Katz, B.3
  • 31
    • 34249736875 scopus 로고    scopus 로고
    • Supralinear increase of recurrent inhibition during sparse activity in the somatosensory cortex
    • Kapfer C., Glickfeld L.L., Atallah B.V., Scanziani M. Supralinear increase of recurrent inhibition during sparse activity in the somatosensory cortex. Nat Neurosci 2007, 10:743-753.
    • (2007) Nat Neurosci , vol.10 , pp. 743-753
    • Kapfer, C.1    Glickfeld, L.L.2    Atallah, B.V.3    Scanziani, M.4
  • 34
    • 54149099557 scopus 로고    scopus 로고
    • The dynamical response properties of neocortical neurons to temporally modulated noisy inputs in vitro.
    • Köndgen H., Geisler C., Fusi S., Wang X.J., Lüscher H.R., Giugliano M. The dynamical response properties of neocortical neurons to temporally modulated noisy inputs in vitro. Cereb Cortex 2008, 18:2086-2097.
    • (2008) Cereb Cortex , vol.18 , pp. 2086-2097
    • Köndgen, H.1    Geisler, C.2    Fusi, S.3    Wang, X.J.4    Lüscher, H.R.5    Giugliano, M.6
  • 37
    • 0022249586 scopus 로고
    • Comparative electrophysiology of pyramidal and sparsely spiny stellate neurons of the neocortex
    • McCormick D.A., Connors B.W., Lighthall J.W., Prince D.A. Comparative electrophysiology of pyramidal and sparsely spiny stellate neurons of the neocortex. J Neurophysiol 1985, 54:782-806.
    • (1985) J Neurophysiol , vol.54 , pp. 782-806
    • McCormick, D.A.1    Connors, B.W.2    Lighthall, J.W.3    Prince, D.A.4
  • 38
    • 0027261536 scopus 로고
    • Phase relationship between hippocampal place units and the EEG theta rhythm
    • O'Keefe J., Recce M.L. Phase relationship between hippocampal place units and the EEG theta rhythm. Hippocampus 1993, 3:317-330.
    • (1993) Hippocampus , vol.3 , pp. 317-330
    • O'Keefe, J.1    Recce, M.L.2
  • 39
    • 0035783996 scopus 로고    scopus 로고
    • Chapter 4 distributed processing in cultured neuronal networks
    • Elsevier, M. Nicolelis (Ed.) Advances in neural population coding
    • Potter S.M. Chapter 4 distributed processing in cultured neuronal networks. Progress in brain research 2001, vol. 130:49-62. Elsevier. M. Nicolelis (Ed.).
    • (2001) Progress in brain research , vol.130 , pp. 49-62
    • Potter, S.M.1
  • 41
    • 0027494363 scopus 로고
    • Injection of digitally synthesized synaptic conductance transients to measure the integrative properties of neurons
    • Robinson H.P., Kawai N. Injection of digitally synthesized synaptic conductance transients to measure the integrative properties of neurons. J Neurosci Meth 1993, 49:157-165.
    • (1993) J Neurosci Meth , vol.49 , pp. 157-165
    • Robinson, H.P.1    Kawai, N.2
  • 42
    • 0027430647 scopus 로고
    • The dynamic clamp: artificial conductances in biological neurons
    • Sharp A.A., O'Neil M.B., Abbott L.F., Marder E. The dynamic clamp: artificial conductances in biological neurons. Trends Neurosci 1993, 16:389-394.
    • (1993) Trends Neurosci , vol.16 , pp. 389-394
    • Sharp, A.A.1    O'Neil, M.B.2    Abbott, L.F.3    Marder, E.4
  • 43
    • 33847222518 scopus 로고    scopus 로고
    • Disynaptic inhibition between neocortical pyramidal cells mediated by martinotti cells
    • Silberberg G., Markram H. Disynaptic inhibition between neocortical pyramidal cells mediated by martinotti cells. Neuron 2007, 53:735-746.
    • (2007) Neuron , vol.53 , pp. 735-746
    • Silberberg, G.1    Markram, H.2
  • 44
    • 0027217543 scopus 로고
    • Patch-clamp recordings from the soma and dendrites of neurons in brain slices using infrared video microscopy
    • Stuart G.J., Dodt H., Sakmann B. Patch-clamp recordings from the soma and dendrites of neurons in brain slices using infrared video microscopy. Pflügers Archiv Eur J Physiol 1993, 423:511-518.
    • (1993) Pflügers Archiv Eur J Physiol , vol.423 , pp. 511-518
    • Stuart, G.J.1    Dodt, H.2    Sakmann, B.3
  • 45
  • 46
    • 0031018015 scopus 로고    scopus 로고
    • The neural code between neocortical pyramidal neurons depends on neurotransmitter release probability
    • Tsodyks M.V., Markram H. The neural code between neocortical pyramidal neurons depends on neurotransmitter release probability. Proc Natl Acad Sci 1997, 94:719-723.
    • (1997) Proc Natl Acad Sci , vol.94 , pp. 719-723
    • Tsodyks, M.V.1    Markram, H.2
  • 47
    • 36149005118 scopus 로고
    • On the theory of the Brownian motion
    • Uhlenbeck G.E., Ornstein L.S. On the theory of the Brownian motion. Phys Rev 1930, 36:823-841.
    • (1930) Phys Rev , vol.36 , pp. 823-841
    • Uhlenbeck, G.E.1    Ornstein, L.S.2
  • 50
    • 0036126135 scopus 로고    scopus 로고
    • Anatomical, physiological, molecular and circuit properties of nest basket cells in the developing somatosensory cortex
    • Wang Y., Gupta A., Toledo-Rodriguez M., Wu C., Markram H. Anatomical, physiological, molecular and circuit properties of nest basket cells in the developing somatosensory cortex. Cereb Cortex 2002, 12:395-410.
    • (2002) Cereb Cortex , vol.12 , pp. 395-410
    • Wang, Y.1    Gupta, A.2    Toledo-Rodriguez, M.3    Wu, C.4    Markram, H.5
  • 51
    • 9244234303 scopus 로고    scopus 로고
    • Anatomical, physiological and molecular properties of Martinotti cells in the somatosensory cortex of the juvenile rat
    • Wang Y., Toledo-Rodriguez M., Gupta A., Wu C., Silberberg G., Luo J., et al. Anatomical, physiological and molecular properties of Martinotti cells in the somatosensory cortex of the juvenile rat. J Physiol 2004, 561:65-90.
    • (2004) J Physiol , vol.561 , pp. 65-90
    • Wang, Y.1    Toledo-Rodriguez, M.2    Gupta, A.3    Wu, C.4    Silberberg, G.5    Luo, J.6
  • 52
    • 0031844365 scopus 로고    scopus 로고
    • Noise from voltage-gated ion channels may influence neuronal dynamics in the entorhinal cortex
    • White J., Klink R., Alonso A., Kay A.R. Noise from voltage-gated ion channels may influence neuronal dynamics in the entorhinal cortex. J Neurophysiol 1998, 80:262-269.
    • (1998) J Neurophysiol , vol.80 , pp. 262-269
    • White, J.1    Klink, R.2    Alonso, A.3    Kay, A.R.4
  • 53
    • 0028095260 scopus 로고
    • Reactivation of hippocampal ensemble memories during sleep
    • Wilson M.A., McNaughton B.L. Reactivation of hippocampal ensemble memories during sleep. Science 1994, 265:676-679.
    • (1994) Science , vol.265 , pp. 676-679
    • Wilson, M.A.1    McNaughton, B.L.2
  • 54
    • 83755188751 scopus 로고    scopus 로고
    • A generic framework for real-time multi-channel neuronal signal analysis, telemetry control, and sub-millisecond latency feedback generation
    • Zrenner C., Eytan D., Wallach A., Thier P., Marom S. A generic framework for real-time multi-channel neuronal signal analysis, telemetry control, and sub-millisecond latency feedback generation. Front Neurosci 2010, 4:173.
    • (2010) Front Neurosci , vol.4 , pp. 173
    • Zrenner, C.1    Eytan, D.2    Wallach, A.3    Thier, P.4    Marom, S.5


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