메뉴 건너뛰기




Volumn 9, Issue 1, 2014, Pages

Impact of measurement error on testing genetic association with quantitative traits

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BLOOD PRESSURE; BLOOD PRESSURE MEASUREMENT; CATARACT; COMPUTER SIMULATION; CONTROLLED STUDY; EFFECT SIZE; GENE FREQUENCY; GENETIC ASSOCIATION; GENETIC VARIABILITY; HUMAN; MAJOR CLINICAL STUDY; MEASUREMENT ERROR; PHENOTYPIC VARIATION; QUANTITATIVE ANALYSIS; QUANTITATIVE TRAIT; REPLICATION STUDY; SAMPLE SIZE; ALLELE; BIOLOGICAL MODEL; GENETICS; GENOTYPE; HYPERTENSION; PHENOTYPE; QUANTITATIVE TRAIT LOCUS; SINGLE NUCLEOTIDE POLYMORPHISM; STATISTICAL BIAS;

EID: 84899861420     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0087044     Document Type: Article
Times cited : (11)

References (43)
  • 1
    • 84899795132 scopus 로고    scopus 로고
    • On the power of the Cochran-Armitage test for trend in the presence of misclassification
    • Buonaccorsi JP, Laake P, Veierod MB (2011) On the power of the Cochran-Armitage test for trend in the presence of misclassification. Stat Methods Med Res.
    • (2011) Stat Methods Med Res
    • Buonaccorsi, J.P.1    Laake, P.2    Veierod, M.B.3
  • 2
    • 66749132849 scopus 로고    scopus 로고
    • The impact of gene-environment dependence and misclassification in genetic association studies incorporating gene-environment interactions
    • Lindstrom S, Yen YC, Spiegelman D, Kraft P (2009) The impact of gene-environment dependence and misclassification in genetic association studies incorporating gene-environment interactions. Hum Hered 68: 171-181.
    • (2009) Hum Hered , vol.68 , pp. 171-181
    • Lindstrom, S.1    Yen, Y.C.2    Spiegelman, D.3    Kraft, P.4
  • 3
    • 57449095032 scopus 로고    scopus 로고
    • The effects of misclassification in studies of gene-environment interactions
    • Cheng KF, Lin WJ (2009) The effects of misclassification in studies of gene-environment interactions. Hum Hered 67: 77-87.
    • (2009) Hum Hered , vol.67 , pp. 77-87
    • Cheng, K.F.1    Lin, W.J.2
  • 5
    • 38049087506 scopus 로고    scopus 로고
    • Linear trend tests for case-control genetic association that incorporate random phenotype and genotype misclassification error
    • Gordon D, Haynes C, Yang Y, Kramer PL, Finch SJ (2007) Linear trend tests for case-control genetic association that incorporate random phenotype and genotype misclassification error. Genet Epidemiol 31: 853-870.
    • (2007) Genet Epidemiol , vol.31 , pp. 853-870
    • Gordon, D.1    Haynes, C.2    Yang, Y.3    Kramer, P.L.4    Finch, S.J.5
  • 6
    • 79955811867 scopus 로고    scopus 로고
    • The effect of measurement error of phenotypes on genome wide association studies
    • Barendse W (2011) The effect of measurement error of phenotypes on genome wide association studies. BMC Genomics 12: 232.
    • (2011) BMC Genomics , vol.12 , pp. 232
    • Barendse, W.1
  • 8
    • 25444509248 scopus 로고    scopus 로고
    • Power and sample size calculations in the presence of phenotype errors for case/control genetic association studies
    • Edwards BJ, Haynes C, Levenstien MA, Finch SJ, Gordon D (2005) Power and sample size calculations in the presence of phenotype errors for case/control genetic association studies. BMC Genet 6: 18.
    • (2005) BMC Genet , vol.6 , pp. 18
    • Edwards, B.J.1    Haynes, C.2    Levenstien, M.A.3    Finch, S.J.4    Gordon, D.5
  • 9
    • 1842859051 scopus 로고    scopus 로고
    • Power and sample size calculations for case-control genetic association tests when errors are present: Application to single nucleotide polymorphisms
    • DOI 10.1159/000066696
    • Gordon D, Finch SJ, Nothnagel M, Ott J (2002) Power and sample size calculations for case-control genetic association tests when errors are present: application to single nucleotide polymorphisms. Hum Hered 54: 22-33. (Pubitemid 35404246)
    • (2002) Human Heredity , vol.54 , Issue.1 , pp. 22-33
    • Gordon, D.1    Finch, S.J.2    Nothnagel, M.3    Ott, J.4
  • 10
    • 27544482357 scopus 로고    scopus 로고
    • PAWE-3D: Visualizing power for association with error in case-control genetic studies of complex traits
    • DOI 10.1093/bioinformatics/bti643
    • Gordon D, Haynes C, Blumenfeld J, Finch SJ (2005) PAWE-3D: visualizing power for association with error in case-control genetic studies of complex traits. Bioinformatics 21: 3935-3937. (Pubitemid 41535513)
    • (2005) Bioinformatics , vol.21 , Issue.20 , pp. 3935-3937
    • Gordon, D.1    Haynes, C.2    Blumenfeld, J.3    Finch, S.J.4
  • 11
    • 70350351582 scopus 로고    scopus 로고
    • Detecting new neurodegenerative disease genes: Does phenotype accuracy limit the horizon?
    • Samuels DC, Burn DJ, Chinnery PF (2009) Detecting new neurodegenerative disease genes: does phenotype accuracy limit the horizon? Trends in Genetics 25: 486-488.
    • (2009) Trends in Genetics , vol.25 , pp. 486-488
    • Samuels, D.C.1    Burn, D.J.2    Chinnery, P.F.3
  • 13
    • 77956186081 scopus 로고    scopus 로고
    • Statistical power to detect genetic Loci affecting environmental sensitivity
    • Visscher PM, Posthuma D (2010) Statistical power to detect genetic Loci affecting environmental sensitivity. Behav Genet 40: 728-733.
    • (2010) Behav Genet , vol.40 , pp. 728-733
    • Visscher, P.M.1    Posthuma, D.2
  • 14
    • 84863304598 scopus 로고    scopus 로고
    • R Development Core Team Vienna, Austria: R Foundation for Statistical Computing
    • R Development Core Team (2012) R: A language and environment for statistical computing. Vienna, Austria: R Foundation for Statistical Computing.
    • (2012) R: A Language and Environment for Statistical Computing
  • 16
    • 72049103953 scopus 로고    scopus 로고
    • Methodology of the Singapore Indian Chinese Cohort (SICC) eye study: Quantifying ethnic variations in the epidemiology of eye diseases in Asians
    • Lavanya R, Jeganathan VS, Zheng Y, Raju P, Cheung N, et al. (2009) Methodology of the Singapore Indian Chinese Cohort (SICC) eye study: quantifying ethnic variations in the epidemiology of eye diseases in Asians. Ophthalmic Epidemiol 16: 325-336.
    • (2009) Ophthalmic Epidemiol , vol.16 , pp. 325-336
    • Lavanya, R.1    Jeganathan, V.S.2    Zheng, Y.3    Raju, P.4    Cheung, N.5
  • 17
    • 0027173798 scopus 로고
    • The Lens Opacities Classification System III. The Longitudinal Study of Cataract Study Group
    • Chylack LT, Jr., Wolfe JK, Singer DM, Leske MC, Bullimore MA, et al. (1993) The Lens Opacities Classification System III. The Longitudinal Study of Cataract Study Group. Arch Ophthalmol 111: 831-836.
    • (1993) Arch Ophthalmol , vol.111 , pp. 831-836
    • Chylack Jr., L.T.1    Wolfe, J.K.2    Singer, D.M.3    Leske, M.C.4    Bullimore, M.A.5
  • 18
    • 0025054487 scopus 로고
    • Assessment of cataracts from photographs in the Beaver Dam Eye Study
    • Klein BE, Klein R, Linton KL, Magli YL, Neider MW (1990) Assessment of cataracts from photographs in the Beaver Dam Eye Study. Ophthalmology 97: 1428-1433. (Pubitemid 20383275)
    • (1990) Ophthalmology , vol.97 , Issue.11 , pp. 1428-1433
    • Eden, K.K.B.1    Klein, R.2    Lee, P.L.K.3    Magli, Y.L.4    Neider, M.W.5
  • 20
    • 84855281926 scopus 로고    scopus 로고
    • Genome-wide meta-analysis of five Asian cohorts identifies PDGFRA as a susceptibility locus for corneal astigmatism
    • Fan Q, Zhou X, Khor CC, Cheng CY, Goh LK, et al. (2011) Genome-wide meta-analysis of five Asian cohorts identifies PDGFRA as a susceptibility locus for corneal astigmatism. PLoS Genet 7: e1002402.
    • (2011) PLoS Genet , vol.7
    • Fan, Q.1    Zhou, X.2    Khor, C.C.3    Cheng, C.Y.4    Goh, L.K.5
  • 21
    • 84864051802 scopus 로고    scopus 로고
    • Genetic variants on chromosome 1q41 influence ocular axial length and high myopia
    • Fan Q, Barathi VA, Cheng CY, Zhou X, Meguro A, et al. (2012) Genetic variants on chromosome 1q41 influence ocular axial length and high myopia. PLoS Genet 8: e1002753.
    • (2012) PLoS Genet , vol.8
    • Fan, Q.1    Barathi, V.A.2    Cheng, C.Y.3    Zhou, X.4    Meguro, A.5
  • 22
    • 80053907554 scopus 로고    scopus 로고
    • Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk
    • Ehret GB, Munroe PB, Rice KM, Bochud M, Johnson AD, et al. (2011) Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk. Nature 478: 103-109.
    • (2011) Nature , vol.478 , pp. 103-109
    • Ehret, G.B.1    Munroe, P.B.2    Rice, K.M.3    Bochud, M.4    Johnson, A.D.5
  • 24
    • 84867330691 scopus 로고    scopus 로고
    • FTO genotype is associated with phenotypic variability of body mass index
    • Yang J, Loos RJF, Powell JE, Medland SE, Speliotes EK, et al. (2012) FTO genotype is associated with phenotypic variability of body mass index. Nature 490: 267-+.
    • (2012) Nature , vol.490
    • Yang, J.1    Loos, R.J.F.2    Powell, J.E.3    Medland, S.E.4    Speliotes, E.K.5
  • 25
    • 0019636384 scopus 로고
    • COMPARATIVE STUDY OF TESTS FOR HOMOGENEITY OF VARIANCES, WITH APPLICATIONS TO THE OUTER CONTINENTAL SHELF BIDDING DATA
    • Conover WJ, Johnson ME, Johnson MM (1981) A Comparative-Study of Tests for Homogeneity of Variances, with Applications to the Outer Continental-Shelf Bidding Data. Technometrics 23: 351-361. (Pubitemid 12456651)
    • (1981) Technometrics , vol.23 , Issue.4 , pp. 351-361
    • Conover, W.J.1    Johnson, M.E.2    Johnson, M.M.3
  • 26
    • 78649746026 scopus 로고    scopus 로고
    • Phenotypic complexity, measurement bias, and poor phenotypic resolution contribute to the missing heritability problem in genetic association studies
    • van der Sluis S, Verhage M, Posthuma D, Dolan CV (2010) Phenotypic complexity, measurement bias, and poor phenotypic resolution contribute to the missing heritability problem in genetic association studies. PLoS One 5: e13929.
    • (2010) PLoS One , vol.5
    • Van Der Sluis, S.1    Verhage, M.2    Posthuma, D.3    Dolan, C.V.4
  • 27
    • 33644617812 scopus 로고    scopus 로고
    • The role of measurement reliability in clinical trials
    • Lachin JM (2004) The role of measurement reliability in clinical trials. Clin Trials 1: 553-566.
    • (2004) Clin Trials , vol.1 , pp. 553-566
    • Lachin, J.M.1
  • 28
    • 42649140555 scopus 로고    scopus 로고
    • Comparative study of central corneal thickness measurement with slit-lamp optical coherence tomography and visante optical coherence tomography
    • Li H, Leung CK, Wong L, Cheung CY, Pang CP, et al. (2008) Comparative study of central corneal thickness measurement with slit-lamp optical coherence tomography and visante optical coherence tomography. Ophthalmology 115: 796-801 e792.
    • (2008) Ophthalmology , vol.115
    • Li, H.1    Leung, C.K.2    Wong, L.3    Cheung, C.Y.4    Pang, C.P.5
  • 29
    • 1542328914 scopus 로고    scopus 로고
    • 1c measured by DCA 2000 and by HPLC: Effects of fetal hemoglobin concentrations
    • DOI 10.1016/j.arcmed.2003.10.003, PII S0188440903001541
    • Diem P, Walchli M, Mullis PE, Marti U (2004) Agreement between HbA1c measured by DCA 2000 and by HPLC: effects of fetal hemoglobin concentrations. Arch Med Res 35: 145-149. (Pubitemid 38316834)
    • (2004) Archives of Medical Research , vol.35 , Issue.2 , pp. 145-149
    • Diem, P.1    Walchli, M.2    Mullis, P.E.3    Marti, U.4
  • 30
    • 0027439220 scopus 로고
    • Bias and variability in blood pressure measurement with ambulatory recorders
    • Pannarale G, Bebb G, Clark S, Sullivan A, Foster C, et al. (1993) Bias and variability in blood pressure measurement with ambulatory recorders. Hypertension 22: 591-598. (Pubitemid 23292167)
    • (1993) Hypertension , vol.22 , Issue.4 , pp. 591-598
    • Pannarale, G.1    Bebb, G.2    Clark, S.3    Sullivan, A.4    Foster, C.5    Coats, A.J.S.6
  • 31
    • 0034747904 scopus 로고    scopus 로고
    • The repeatability and accuracy of axial length and anterior chamber depth measurements from the IOLMaster
    • DOI 10.1016/S0275-5408(01)00016-3, PII S0275540801000163
    • Lam AK, Chan R, Pang PC (2001) The repeatability and accuracy of axial length and anterior chamber depth measurements from the IOLMaster. Ophthalmic Physiol Opt 21: 477-483. (Pubitemid 33016300)
    • (2001) Ophthalmic and Physiological Optics , vol.21 , Issue.6 , pp. 477-483
    • Lam, A.K.C.1    Chan, R.2    Pang, P.C.K.3
  • 32
    • 0000534255 scopus 로고
    • Errors of Measurement in Statistics
    • Cochran WG (1968) Errors of Measurement in Statistics. Technometrics 10: 637-666.
    • (1968) Technometrics , vol.10 , pp. 637-666
    • Cochran, W.G.1
  • 33
    • 0032581045 scopus 로고    scopus 로고
    • Estimating sample size for epidemiologic studies: The impact of ignoring exposure measurement uncertainty
    • DOI 10.1002/(SICI)1097-0258(19980630)17:12<1375::A
    • Devine OJ, Smith JM (1998) Estimating sample size for epidemiologic studies: the impact of ignoring exposure measurement uncertainty. Stat Med 17: 1375-1389. (Pubitemid 28310544)
    • (1998) Statistics in Medicine , vol.17 , Issue.12 , pp. 1375-1389
    • Devine, O.J.1    Smith, J.M.2
  • 35
    • 16344384926 scopus 로고    scopus 로고
    • Measurement error models with auxiliary data
    • Xiaohong Chen HH, Elie Tamer (2005) Measurement error models with auxiliary data. Review of Economic Studies 72: 343-366.
    • (2005) Review of Economic Studies , vol.72 , pp. 343-366
    • Chen, X.1    H, H.2    Tamer, E.3
  • 36
    • 85128292185 scopus 로고    scopus 로고
    • The regression calibration method for fitting generalized linear models with additive measurement error
    • Hardin JW, Schmiediche H, Carroll RJ (2003) The regression calibration method for fitting generalized linear models with additive measurement error. The Stata Journal 8: 361-372.
    • (2003) The Stata Journal , vol.8 , pp. 361-372
    • Hardin, J.W.1    Schmiediche, H.2    Carroll, R.J.3
  • 38
    • 19944420868 scopus 로고    scopus 로고
    • Iatrogenic specification error: A cautionary tale of cleaning data
    • DOI 10.1086/428028
    • Bollinger CR, Chandra A (2005) Iatrogenic specification error: a cautionary tale of cleaning data. Journal of Labor Economics 23: 235-257. (Pubitemid 40758769)
    • (2005) Journal of Labor Economics , vol.23 , Issue.2 , pp. 235-257
    • Bollinger, C.R.1    Chandra, A.2
  • 40
    • 12244264435 scopus 로고    scopus 로고
    • Genetic power calculator: Design of linkage and association genetic mapping studies of complex traits
    • DOI 10.1093/bioinformatics/19.1.149
    • Purcell S, Cherny SS, Sham PC (2003) Genetic Power Calculator: design of linkage and association genetic mapping studies of complex traits. Bioinformatics 19: 149-150. (Pubitemid 36150192)
    • (2003) Bioinformatics , vol.19 , Issue.1 , pp. 149-150
    • Purcell, S.1    Cherny, S.S.2    Sham, P.C.3
  • 41
    • 1842532350 scopus 로고    scopus 로고
    • The bayesian revolution in genetics
    • DOI 10.1038/nrg1318
    • Beaumont MA, Rannala B (2004) The Bayesian revolution in genetics. Nat Rev Genet 5: 251-261. (Pubitemid 38435621)
    • (2004) Nature Reviews Genetics , vol.5 , Issue.4 , pp. 251-261
    • Beaumont, M.A.1    Rannala, B.2
  • 42
    • 33748804424 scopus 로고    scopus 로고
    • A tutorial on statistical methods for population association studies
    • Balding DJ (2006) A tutorial on statistical methods for population association studies. Nat Rev Genet 7: 781-791.
    • (2006) Nat Rev Genet , vol.7 , pp. 781-791
    • Balding, D.J.1
  • 43
    • 84864314907 scopus 로고    scopus 로고
    • Are linear regression techniques appropriate for analysis when the dependent (outcome) variable is not normally distributed?
    • Li X, Wong W, Lamoureux EL, Wong TY (2012) Are linear regression techniques appropriate for analysis when the dependent (outcome) variable is not normally distributed? Invest Ophthalmol Vis Sci 53: 3082-3083.
    • (2012) Invest Ophthalmol Vis Sci , vol.53 , pp. 3082-3083
    • Li, X.1    Wong, W.2    Lamoureux, E.L.3    Wong, T.Y.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.