-
1
-
-
84878543842
-
Emergent biological properties of arrestin pathway-selective biased agonism
-
Appleton K.M., Luttrell L.M. Emergent biological properties of arrestin pathway-selective biased agonism. J. Recept. Signal Transduct. 2013, 33:153-161.
-
(2013)
J. Recept. Signal Transduct.
, vol.33
, pp. 153-161
-
-
Appleton, K.M.1
Luttrell, L.M.2
-
2
-
-
34247627985
-
Cell size at S phase initiation. an emergent property of the G1/S network
-
Barberis M., Klipp E., Vanoni M., Alberghina L. Cell size at S phase initiation. an emergent property of the G1/S network. PLoS Comput. Biol. 2007, 3:649-666.
-
(2007)
PLoS Comput. Biol.
, vol.3
, pp. 649-666
-
-
Barberis, M.1
Klipp, E.2
Vanoni, M.3
Alberghina, L.4
-
3
-
-
0033555859
-
Emergent properties of networks of biological signaling pathways
-
Bhalla U.S., Iyengar R. Emergent properties of networks of biological signaling pathways. Science 1999, 283:381-387.
-
(1999)
Science
, vol.283
, pp. 381-387
-
-
Bhalla, U.S.1
Iyengar, R.2
-
4
-
-
21244472631
-
Emergence and its place in nature. a case study of biochemical networks
-
Boogerd F.C., Bruggeman F.J., Richardson R.C., Stephan A., Westerhoff H.V. Emergence and its place in nature. a case study of biochemical networks. Synthese 2005, 145:131-164.
-
(2005)
Synthese
, vol.145
, pp. 131-164
-
-
Boogerd, F.C.1
Bruggeman, F.J.2
Richardson, R.C.3
Stephan, A.4
Westerhoff, H.V.5
-
5
-
-
84899827489
-
-
Alternative linear inequalities, 2012. Available from:
-
Border, K.C., Alternative linear inequalities, 2012. Available from: http://www.hss.caltech.edu/kcb/Notes/Alternative.pdf.
-
-
-
Border, K.C.1
-
6
-
-
1242274402
-
Flux coupling analysis of genome-scale metabolic network reconstructions
-
Burgard A.P., Nikolaev E.V., Schilling C.H., Maranas C.D. Flux coupling analysis of genome-scale metabolic network reconstructions. Genome Res. 2004, 14:301-312.
-
(2004)
Genome Res.
, vol.14
, pp. 301-312
-
-
Burgard, A.P.1
Nikolaev, E.V.2
Schilling, C.H.3
Maranas, C.D.4
-
7
-
-
84856579358
-
Enumerating metabolic pathways for the production of heterologous target chemicals in chassis organisms
-
Carbonell P., Fichera D., Pandit S.B., Faulon J.-L. Enumerating metabolic pathways for the production of heterologous target chemicals in chassis organisms. BMC Syst. Biol. 2012, 6:10.
-
(2012)
BMC Syst. Biol.
, vol.6
, pp. 10
-
-
Carbonell, P.1
Fichera, D.2
Pandit, S.B.3
Faulon, J.-L.4
-
8
-
-
0035824029
-
Regulation of gene expression in flux balance models of metabolism
-
Covert M.W., Schilling C.H., Palsson B. Regulation of gene expression in flux balance models of metabolism. J. Theor. Biol. 2001, 213:73-88.
-
(2001)
J. Theor. Biol.
, vol.213
, pp. 73-88
-
-
Covert, M.W.1
Schilling, C.H.2
Palsson, B.3
-
9
-
-
79958767550
-
FFCA: a feasibility-based method for flux coupling analysis of metabolic networks
-
David L., Marashi S.-A., Larhlimi A., Mieth B., Bockmayr A. FFCA: a feasibility-based method for flux coupling analysis of metabolic networks. BMC Bioinformat. 2011, 12:236.
-
(2011)
BMC Bioinformat.
, vol.12
, pp. 236
-
-
David, L.1
Marashi, S.-A.2
Larhlimi, A.3
Mieth, B.4
Bockmayr, A.5
-
10
-
-
0025849021
-
Size and connectivity as emergent properties of a developing immune network
-
De Boer R.J., Perelson A.S. Size and connectivity as emergent properties of a developing immune network. J. Theor. Biol. 1991, 149:381-424.
-
(1991)
J. Theor. Biol.
, vol.149
, pp. 381-424
-
-
De Boer, R.J.1
Perelson, A.S.2
-
11
-
-
58049211936
-
Can sugars be produced from fatty acids? A test case for pathway analysis tools
-
De Figueiredo L.F., Schuster S., Kaleta C., Fell D.A. Can sugars be produced from fatty acids? A test case for pathway analysis tools. Bioinformatics 2009, 25:152-158.
-
(2009)
Bioinformatics
, vol.25
, pp. 152-158
-
-
De Figueiredo, L.F.1
Schuster, S.2
Kaleta, C.3
Fell, D.A.4
-
12
-
-
63249106672
-
Q&A. systems biology
-
Ferrell J.E. Q&A. systems biology. J. Biol. 2009, 8:2.
-
(2009)
J. Biol.
, vol.8
, pp. 2
-
-
Ferrell, J.E.1
-
13
-
-
79952637804
-
Modeling the cell cycle. why do certain circuits oscillate?
-
Ferrell J.E., Tsai T.Y.-C., Yang Q. Modeling the cell cycle. why do certain circuits oscillate?. Cell 2011, 144:874-885.
-
(2011)
Cell
, vol.144
, pp. 874-885
-
-
Ferrell, J.E.1
Tsai, T.Y.-C.2
Yang, Q.3
-
14
-
-
52949144612
-
Detection of stoichiometric inconsistencies in biomolecular models
-
Gevorgyan A., Poolman M.G., Fell D.A. Detection of stoichiometric inconsistencies in biomolecular models. Bioinformatics 2008, 24:2245-2251.
-
(2008)
Bioinformatics
, vol.24
, pp. 2245-2251
-
-
Gevorgyan, A.1
Poolman, M.G.2
Fell, D.A.3
-
15
-
-
34249653071
-
Towards zoomable multidimensional maps of the cell
-
Hu Z., Mellor J., Wu J., Kanehisa M., Stuart J.M., DeLisi C. Towards zoomable multidimensional maps of the cell. Nat. Biotechnol. 2007, 25:547-554.
-
(2007)
Nat. Biotechnol.
, vol.25
, pp. 547-554
-
-
Hu, Z.1
Mellor, J.2
Wu, J.3
Kanehisa, M.4
Stuart, J.M.5
DeLisi, C.6
-
17
-
-
84899785002
-
-
New Concepts and Tools in Constraint-based Analysis of Metabolic Networks (Ph.D. thesis). Freie Universität Berlin.
-
Larhlimi, A., 2008. New Concepts and Tools in Constraint-based Analysis of Metabolic Networks (Ph.D. thesis). Freie Universität Berlin.
-
(2008)
-
-
Larhlimi, A.1
-
18
-
-
33750401814
-
-
A new approach to flux coupling analysis of metabolic networks. In: Lecture Notes in Computer Science, vol.
-
Larhlimi, A., Bockmayr, A., 2006. A new approach to flux coupling analysis of metabolic networks. In: Lecture Notes in Computer Science, vol. 4216. pp. 205-215.
-
(2006)
, vol.4216
, pp. 205-215
-
-
Larhlimi, A.1
Bockmayr, A.2
-
19
-
-
84873961337
-
Multilevel omic data integration in cancer cell lines. advanced annotation and emergent properties
-
Liu Y., Devescovi V., Chen S., Nardini C. Multilevel omic data integration in cancer cell lines. advanced annotation and emergent properties. BMC Syst. Biol. 2013, 7:14.
-
(2013)
BMC Syst. Biol.
, vol.7
, pp. 14
-
-
Liu, Y.1
Devescovi, V.2
Chen, S.3
Nardini, C.4
-
20
-
-
78650227068
-
Flux coupling analysis of metabolic networks is sensitive to missing reactions
-
Marashi S.-A., Bockmayr A. Flux coupling analysis of metabolic networks is sensitive to missing reactions. BioSystems 2011, 103:57-66.
-
(2011)
BioSystems
, vol.103
, pp. 57-66
-
-
Marashi, S.-A.1
Bockmayr, A.2
-
21
-
-
84858726254
-
On flux coupling analysis of metabolic subsystems
-
Marashi S.-A., David L., Bockmayr A. On flux coupling analysis of metabolic subsystems. J. Theor. Biol. 2012, 302:62-69.
-
(2012)
J. Theor. Biol.
, vol.302
, pp. 62-69
-
-
Marashi, S.-A.1
David, L.2
Bockmayr, A.3
-
22
-
-
37849034945
-
Complexity in biology exceeding the limits of reductionism and determinism using complexity theory
-
Mazzocchi F. Complexity in biology exceeding the limits of reductionism and determinism using complexity theory. EMBO Rep. 2008, 9:10-14.
-
(2008)
EMBO Rep.
, vol.9
, pp. 10-14
-
-
Mazzocchi, F.1
-
23
-
-
84888861074
-
The limits of reductionism in biology. what alternatives?
-
Mazzocchi F. The limits of reductionism in biology. what alternatives?. E-LOGOS: Electron. J. Philos. 2011, 11:1-19.
-
(2011)
E-LOGOS: Electron. J. Philos.
, vol.11
, pp. 1-19
-
-
Mazzocchi, F.1
-
24
-
-
84879002382
-
Basic and applied uses of genome-scale metabolic network reconstructions of Escherichia coli
-
McCloskey D., Palsson B.Ø., Feist A.M. Basic and applied uses of genome-scale metabolic network reconstructions of Escherichia coli. Mol. Syst. Biol. 2013, 9:661.
-
(2013)
Mol. Syst. Biol.
, vol.9
, pp. 661
-
-
McCloskey, D.1
Palsson, B.Ø.2
Feist, A.M.3
-
25
-
-
84899894378
-
-
Thermodynamic Constraints for Metabolic Networks (M.Sc. thesis). Freie Universität Berlin.
-
Müller, A., 2012. Thermodynamic Constraints for Metabolic Networks (M.Sc. thesis). Freie Universität Berlin.
-
(2012)
-
-
Müller, A.1
-
26
-
-
32344436447
-
Chaperone-related immune dysfunction. an emergent property of distorted chaperone networks
-
Nardai G., Vegh E.M., Prohaszka Z., Csermely P. Chaperone-related immune dysfunction. an emergent property of distorted chaperone networks. Trends Immunol. 2006, 27:74-79.
-
(2006)
Trends Immunol.
, vol.27
, pp. 74-79
-
-
Nardai, G.1
Vegh, E.M.2
Prohaszka, Z.3
Csermely, P.4
-
27
-
-
34248532344
-
Essentiality is an emergent property of metabolic network wiring
-
Palumbo M.C., Colosimo A., Giuliani A., Farina L. Essentiality is an emergent property of metabolic network wiring. FEBS Lett. 2007, 581:2485-2489.
-
(2007)
FEBS Lett.
, vol.581
, pp. 2485-2489
-
-
Palumbo, M.C.1
Colosimo, A.2
Giuliani, A.3
Farina, L.4
-
28
-
-
1442335464
-
Topological analysis of mass-balanced signaling networks. a framework to obtain network properties including crosstalk
-
Papin J.A., Palsson B.O. Topological analysis of mass-balanced signaling networks. a framework to obtain network properties including crosstalk. J. Theor. Biol. 2004, 227:283-297.
-
(2004)
J. Theor. Biol.
, vol.227
, pp. 283-297
-
-
Papin, J.A.1
Palsson, B.O.2
-
30
-
-
61349175175
-
From molecules to systems. the importance of looking both ways
-
Powell A., Dupre J. From molecules to systems. the importance of looking both ways. Stud. History Philos. Biol. Biomed. Sci. 2009, 40:54-64.
-
(2009)
Stud. History Philos. Biol. Biomed. Sci.
, vol.40
, pp. 54-64
-
-
Powell, A.1
Dupre, J.2
-
31
-
-
0037385718
-
Genome-scale microbial in silico models: the constraints-based approach
-
Price N.D., Papin J.A., Schilling C.H., Palsson B.O. Genome-scale microbial in silico models: the constraints-based approach. Trends Biotechnol. 2003, 21:162-169.
-
(2003)
Trends Biotechnol.
, vol.21
, pp. 162-169
-
-
Price, N.D.1
Papin, J.A.2
Schilling, C.H.3
Palsson, B.O.4
-
32
-
-
33645757123
-
Low degree metabolites explain essential reactions and enhance modularity in biological networks
-
Samal A., Singh S., Giri V., Krishna S., Raghuram N., Jain S. Low degree metabolites explain essential reactions and enhance modularity in biological networks. BMC Bioinformat. 2006, 7:118.
-
(2006)
BMC Bioinformat.
, vol.7
, pp. 118
-
-
Samal, A.1
Singh, S.2
Giri, V.3
Krishna, S.4
Raghuram, N.5
Jain, S.6
-
33
-
-
13744262272
-
On the history of the transportation and maximum flow problems
-
Schrijver A. On the history of the transportation and maximum flow problems. Math. Program. 2002, 91:437-445.
-
(2002)
Math. Program.
, vol.91
, pp. 437-445
-
-
Schrijver, A.1
-
34
-
-
0000029295
-
On elementary flux modes in biochemical reaction systems at steady state
-
Schuster S., Hilgetag C. On elementary flux modes in biochemical reaction systems at steady state. J. Biol. Syst. 1994, 2:165-182.
-
(1994)
J. Biol. Syst.
, vol.2
, pp. 165-182
-
-
Schuster, S.1
Hilgetag, C.2
-
35
-
-
77952952952
-
Network thermodynamics in the post-genomic era
-
Soh K.C., Hatzimanikatis V. Network thermodynamics in the post-genomic era. Curr. Opin. Microbiol. 2010, 13:350-357.
-
(2010)
Curr. Opin. Microbiol.
, vol.13
, pp. 350-357
-
-
Soh, K.C.1
Hatzimanikatis, V.2
-
36
-
-
85016518831
-
A topological characterization of medium-dependent essential metabolic reactions
-
Sonnenschein N., Marr C., Hütt M.-T. A topological characterization of medium-dependent essential metabolic reactions. Metabolites 2012, 2:632-647.
-
(2012)
Metabolites
, vol.2
, pp. 632-647
-
-
Sonnenschein, N.1
Marr, C.2
Hütt, M.-T.3
-
37
-
-
0012086859
-
Über positive lösungen homogener linearer gleichungen
-
Stiemke E. Über positive lösungen homogener linearer gleichungen. Math. Ann. 1915, 76:340-342.
-
(1915)
Math. Ann.
, vol.76
, pp. 340-342
-
-
Stiemke, E.1
-
38
-
-
84866931077
-
Criticality is an emergent property of genetic networks that exhibit evolvability
-
Torres-Sosa C., Huang S., Aldana M. Criticality is an emergent property of genetic networks that exhibit evolvability. PLoS Comput. Biol. 2012, 8:e1002669.
-
(2012)
PLoS Comput. Biol.
, vol.8
-
-
Torres-Sosa, C.1
Huang, S.2
Aldana, M.3
-
39
-
-
0345096675
-
Steady state analysis of metabolic pathways using Petri nets
-
Voss K., Heiner M., Koch I. Steady state analysis of metabolic pathways using Petri nets. In Silico Biol. 2003, 3:367-387.
-
(2003)
In Silico Biol.
, vol.3
, pp. 367-387
-
-
Voss, K.1
Heiner, M.2
Koch, I.3
-
40
-
-
84866776512
-
Metabolic networks and their evolution
-
Wagner A. Metabolic networks and their evolution. Adv. Exp. Med. Biol. 2012, 751:29-52.
-
(2012)
Adv. Exp. Med. Biol.
, vol.751
, pp. 29-52
-
-
Wagner, A.1
-
42
-
-
77956415336
-
Emergent cooperation in microbial metabolism
-
Wintermute E.H., Silver P.A. Emergent cooperation in microbial metabolism. Mol. Syst. Biol. 2010, 6:407.
-
(2010)
Mol. Syst. Biol.
, vol.6
, pp. 407
-
-
Wintermute, E.H.1
Silver, P.A.2
|