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Volumn 9, Issue 4, 2014, Pages

De novo transcriptome and small RNA analyses of two Amorphophallus species

Author keywords

[No Author keywords available]

Indexed keywords

MICRORNA; TRANSCRIPTOME; KONJAC GLUCO-MANNAN; MANNAN; PLANT RNA;

EID: 84899751523     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0095428     Document Type: Article
Times cited : (18)

References (33)
  • 1
    • 84899765616 scopus 로고    scopus 로고
    • The germplasm resources of Amorphophallus rivieri Durieu: A review
    • Niu Y, Zhang SL, Wang ZM, Liu PY (2005) The germplasm resources of Amorphophallus rivieri Durieu: a review. Southwest Horticulture, 33:22-24.
    • (2005) Southwest Horticulture , vol.33 , pp. 22-24
    • Niu, Y.1    Zhang, S.L.2    Wang, Z.M.3    Liu, P.Y.4
  • 2
    • 84860831799 scopus 로고    scopus 로고
    • Research Progress in the Modification of Konjac Glucomannan
    • Chen LG (2008) Research Progress in the Modification of Konjac Glucomannan. Journal of Anhui Agri. Sci. 36:6157-6160
    • (2008) Journal of Anhui Agri. Sci. , vol.36 , pp. 6157-6160
    • Chen, L.G.1
  • 3
    • 67650666992 scopus 로고    scopus 로고
    • Analysis of current situation and future trend of konjac industry demand
    • Sheng DX, Teng JX (2008) Analysis of current situation and future trend of konjac industry demand. China Agricultural Information 7:39-40
    • (2008) China Agricultural Information , vol.7 , pp. 39-40
    • Sheng, D.X.1    Teng, J.X.2
  • 5
    • 84899765039 scopus 로고    scopus 로고
    • The cause and control method of konjac soft rot disease
    • Zhou Y, Yan S, Lu HX, Hu GX (2004) The cause and control method of konjac soft rot disease. China Plant Protection 24:17-20
    • (2004) China Plant Protection , vol.24 , pp. 17-20
    • Zhou, Y.1    Yan, S.2    Lu, H.X.3    Hu, G.X.4
  • 6
    • 84899725274 scopus 로고    scopus 로고
    • Mechanism of Relay Multi - Seedling Release Amorphophallus bulbifer and Its Application in Southeast Asia
    • Zhang DH, Wang QP, Duan ZB, Mi KX (2009) Mechanism of Relay Multi - seedling Release Amorphophallus bulbifer and Its Application in Southeast Asia. Resource Development &Market 25:682-684.
    • (2009) Resource Development &Market , vol.25 , pp. 682-684
    • Zhang, D.H.1    Wang, Q.P.2    Duan, Z.B.3    Mi, K.X.4
  • 7
    • 0039353803 scopus 로고
    • Chromosome and DNA variation in Amorphophallus (Araceae)
    • Chauhan KPS, Brandham PE (1985) Chromosome and DNA variation in Amorphophallus (Araceae). Kew Bulletin 40:745-758.
    • (1985) Kew Bulletin , vol.40 , pp. 745-758
    • Chauhan, K.P.S.1    Brandham, P.E.2
  • 8
    • 77957929225 scopus 로고    scopus 로고
    • Intergenic and Repeat Transcription in Human, Chimpanzee and Macaque Brains Measured by RNASeq
    • doi:10.1371/journal.pcbi.1000843
    • Guohua Xu A, He L, Li Z, Xu Y, Li M, et al. (2010) Intergenic and Repeat Transcription in Human, Chimpanzee and Macaque Brains Measured by RNASeq. PLoS Comput Biol 6(7): e1000843. doi:10.1371/journal.pcbi.1000843
    • (2010) PLoS Comput Biol , vol.6 , Issue.7
    • Guohua Xu, A.1    He, L.2    Li, Z.3    Xu, Y.4    Li, M.5
  • 9
    • 77951871117 scopus 로고    scopus 로고
    • Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome
    • Zhang GJ, Guo GW, Hu XD, Zhang Y, Li QY, et al. (2010) Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome. Genome Res. 20: 646-654
    • (2010) Genome Res. , vol.20 , pp. 646-654
    • Zhang, G.J.1    Guo, G.W.2    Hu, X.D.3    Zhang, Y.4    Li, Q.Y.5
  • 10
    • 84876974302 scopus 로고    scopus 로고
    • Simultaneous Transcriptome Analysis of Sorghum and Bipolaris sorghicola by Using RNA-seq in Combination with de Novo Transcriptome Assembly
    • doi:10.1371/journal.pone.0062460
    • Yazawa T, Kawahigashi H, Matsumoto T, Mizuno H (2013) Simultaneous Transcriptome Analysis of Sorghum and Bipolaris sorghicola by Using RNA-seq in Combination with De Novo Transcriptome Assembly. PLoS ONE 8(4): e62460. doi:10.1371/journal.pone.0062460
    • (2013) PLoS ONE , vol.8 , Issue.4
    • Yazawa, T.1    Kawahigashi, H.2    Matsumoto, T.3    Mizuno, H.4
  • 11
    • 84874608002 scopus 로고    scopus 로고
    • Transcriptome Analysis of Gerbera hybrida Ray Florets: Putative Genes Associated with Gibberellin Metabolism and Signal Transduction
    • doi:10.1371/journal.pone.0057715
    • Kuang Q, Li L, Peng J, Sun S, Wang X (2013) Transcriptome Analysis of Gerbera hybrida Ray Florets: Putative Genes Associated with Gibberellin Metabolism and Signal Transduction. PLoS ONE 8(3): e57715. doi:10.1371/journal. pone.0057715
    • (2013) PLoS ONE , vol.8 , Issue.3
    • Kuang, Q.1    Li, L.2    Peng, J.3    Sun, S.4    Wang, X.5
  • 12
    • 79960264362 scopus 로고    scopus 로고
    • Fulllength transcriptome assembly from RNA-Seq data without a reference genome
    • Grabherr MG, Haas BJ, Yassour M, Levin JZ, Thompson DA, et al. (2011) Fulllength transcriptome assembly from RNA-Seq data without a reference genome. Nat Biotechnol 29: 644-652.
    • (2011) Nat Biotechnol , vol.29 , pp. 644-652
    • Grabherr, M.G.1    Haas, B.J.2    Yassour, M.3    Levin, J.Z.4    Thompson, D.A.5
  • 13
    • 24644503098 scopus 로고    scopus 로고
    • Blast2GO: A universal tool for annotation, visualization and analysis in functional genomics research
    • DOI 10.1093/bioinformatics/bti610
    • Conesa A, Gotz S, García-Gómez JM, Terol1 J, Talón1 M, et al. (2005) Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 21: 3674-3676. (Pubitemid 41264107)
    • (2005) Bioinformatics , vol.21 , Issue.18 , pp. 3674-3676
    • Conesa, A.1    Gotz, S.2    Garcia-Gomez, J.M.3    Terol, J.4    Talon, M.5    Robles, M.6
  • 15
    • 0033290515 scopus 로고    scopus 로고
    • ESTScan: A program for detecting, evaluating, and reconstructing potential coding regions in EST sequences
    • Iseli C, Jongeneel CV, Bucher P (1999) ESTScan: a program for detecting, evaluating, and reconstructing potential coding regions in EST sequences. Proc Int Conf Intell Syst Mol Biol 99: 138-148.
    • (1999) Proc Int Conf Intell Syst Mol Biol , vol.99 , pp. 138-148
    • Iseli, C.1    Jongeneel, C.V.2    Bucher, P.3
  • 16
    • 46249106990 scopus 로고    scopus 로고
    • Mapping and quantifying mammalian transcriptomes by RNA-Seq
    • DOI 10.1038/nmeth.1226, PII NMETH.1226
    • Mortazavi A, Williams BA, Kenneth MC, Lorian S, Barbara W (2008). Mapping and quantifying mammalian transcriptomes by RNA-Seq.Nat Methods 5: 621-628. (Pubitemid 351911867)
    • (2008) Nature Methods , vol.5 , Issue.7 , pp. 621-628
    • Mortazavi, A.1    Williams, B.A.2    McCue, K.3    Schaeffer, L.4    Wold, B.5
  • 17
    • 0030681260 scopus 로고    scopus 로고
    • The significance of digital gene expression profiles
    • Audic S, Claverie JM (1997) The significance of digital gene expression profiles. Genome Res 7:986-995. (Pubitemid 27487763)
    • (1997) Genome Research , vol.7 , Issue.10 , pp. 986-995
    • Audic, S.1    Claverie, J.-M.2
  • 20
    • 17444430392 scopus 로고    scopus 로고
    • microRNA-directed phasing during trans-acting siRNA biogenesis in plants
    • DOI 10.1016/j.cell.2005.04.004
    • Allen E, Xie Z, Gustafson AM, Carrington JC (2005) microRNA directed phasing during trans-acting siRNA biogenesis in plants. Cell 121: 207-221. (Pubitemid 40546389)
    • (2005) Cell , vol.121 , Issue.2 , pp. 207-221
    • Allen, E.1    Xie, Z.2    Gustafson, A.M.3    Carrington, J.C.4
  • 21
    • 16244398080 scopus 로고    scopus 로고
    • Specific effects of microRNAs on the plant transcriptome
    • DOI 10.1016/j.devcel.2005.01.018, PII S1534580705000225
    • Schwab R, Palatnik JF, Riester M, Schommer C, Schmid M, et al. (2005) Specific effects of microRNAs on the plant transcriptome. Developmental Cell 8:517-527. (Pubitemid 40450741)
    • (2005) Developmental Cell , vol.8 , Issue.4 , pp. 517-527
    • Schwab, R.1    Palatnik, J.F.2    Riester, M.3    Schommer, C.4    Schmid, M.5    Weigel, D.6
  • 22
    • 0035710746 scopus 로고    scopus 로고
    • Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 22DDCT Method
    • Livaka KJ, Schmittgen TD (2001) Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 22DDCT Method. Methods 25:402-408
    • (2001) Methods , vol.25 , pp. 402-408
    • Livaka, K.J.1    Schmittgen, T.D.2
  • 23
    • 84899743303 scopus 로고    scopus 로고
    • Biosynthesis of konja glucomannan
    • Liu PY, editor. Beijing: China Agriculture Press
    • Zhang XG (2004) Biosynthesis of konja glucomannan. In: Liu PY, editor. Konjac biology. Beijing: China Agriculture Press. pp84-91
    • (2004) Konjac Biology , pp. 84-91
    • Zhang, X.G.1
  • 24
    • 80052074108 scopus 로고    scopus 로고
    • Deep sequencing of voodoo lily (Amorphophallus konjac): An approach to identify relevant genes involved in the synthesis of the hemicellulose glucomannan
    • Gille S, Cheng K, Skinner ME, Liepman AH, Wilkerson CG, et al. (2011) Deep sequencing of voodoo lily (Amorphophallus konjac): an approach to identify relevant genes involved in the synthesis of the hemicellulose glucomannan. Planta 234:515-526
    • (2011) Planta , vol.234 , pp. 515-526
    • Gille, S.1    Cheng, K.2    Skinner, M.E.3    Liepman, A.H.4    Wilkerson, C.G.5
  • 26
    • 84912325663 scopus 로고
    • Composition of soluble nucleotides in growing corms of Amorphophallus konjac C
    • Murata T (1975) Composition of soluble nucleotides in growing corms of Amorphophallus konjac C. Koch. Agri. Biol. Chem. 39:1401-1406(7)
    • (1975) Koch. Agri. Biol. Chem. , vol.39
    • Murata, T.1
  • 27
    • 0036479096 scopus 로고    scopus 로고
    • Composition of Drosophila melanogaster Proteome Involved in Fucosylated Glycan Metabolism
    • Christophe R, Meelis K, Pirkko M, Risto R (2002) Composition of Drosophila melanogaster Proteome Involved in Fucosylated Glycan Metabolism. Journal of Biological Chemistry, 277, 3168-3175.
    • (2002) Journal of Biological Chemistry , vol.277 , pp. 3168-3175
    • Christophe, R.1    Meelis, K.2    Pirkko, M.3    Risto, R.4
  • 28
    • 0029854189 scopus 로고    scopus 로고
    • Expression, purification and characterization of recombinant phosphomannomutase and GDP-α-D-mannose pyrophosphorylase from Salmonella enterica, group B, for the synthesis of GDP-α-D-mannose from D-mannose
    • Lothar E, Jörg ER, Stefan V (1996) Expression, purification and characterization of recombinant phosphomannomutase and GDP-α-D-mannose pyrophosphorylase from Salmonella enterica, group B, for the synthesis of GDP-α-D-mannose from D-mannose. Glycobiology 6: 591-597.
    • (1996) Glycobiology , vol.6 , pp. 591-597
    • Lothar, E.1    Jörg, E.R.2    Stefan, V.3
  • 30
    • 0002998420 scopus 로고
    • Biology and molecular biology of starch synthesis and its regulation
    • Miflin B J, ed. Oxford University Press
    • Preiss J (1991) Biology and molecular biology of starch synthesis and its regulation. In: Miflin B J, ed. Oxford Survey of Plant Molecular and Cellular Biology. Vol. 7. Oxford University Press, pp59-114.
    • (1991) Oxford Survey of Plant Molecular and Cellular Biology , vol.7 , pp. 59-114
    • Preiss, J.1
  • 33
    • 0442314288 scopus 로고    scopus 로고
    • ADP-glucose pyrophosphorylase: A regulatory enzyme for plant starch synthesis
    • DOI 10.1023/B:PRES.0000011916.67519.58
    • Ballicora MA, Iglesias AA, Preiss J (2004) ADP-glucose pyrophosphory lase:A regulatory enzyme for plantstarch synthesis. Photosynthests Res 79:1-24 (Pubitemid 38184772)
    • (2004) Photosynthesis Research , vol.79 , Issue.1 , pp. 1-24
    • Ballicora, M.A.1    Iglesias, A.A.2    Preiss, J.3


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