-
1
-
-
16544389447
-
The visible human data sets (VHD) and insight toolkit (ITk): Experiments in open source software
-
2003
-
Ackerman, M. J., and Yoo, T. S. (2003). The visible human data sets (VHD) and insight toolkit (ITk): experiments in open source software. AMIA Annu. Symp. Proc. 2003:773.
-
(2003)
AMIA Annu. Symp. Proc.
, pp. 773
-
-
Ackerman, M.J.1
Yoo, T.S.2
-
2
-
-
78650181934
-
A reproducible evaluation of ANTs similarity metric performance in brain image registration
-
doi: 10.1016/j.neuroimage.2010.09.025
-
Avants, B. B., Tustison, N. J., Song, G., Cook, P. A., Klein, A., and Gee, J. C. (2011). A reproducible evaluation of ANTs similarity metric performance in brain image registration. Neuroimage 54, 2033-2044. doi: 10.1016/j.neuroimage.2010.09.025
-
(2011)
Neuroimage
, vol.54
, pp. 2033-2044
-
-
Avants, B.B.1
Tustison, N.J.2
Song, G.3
Cook, P.A.4
Klein, A.5
Gee, J.C.6
-
3
-
-
55149110117
-
Multivariate analysis of structural and diffusion imaging in traumatic brain injury
-
doi: 10.1016/j.acra.2008.07.007
-
Avants, B., Duda, J. T., Kim, J., Zhang, H., Pluta, J., Gee, J. C., et al. (2008). Multivariate analysis of structural and diffusion imaging in traumatic brain injury. Acad. Radiol. 15, 1360-1375. doi: 10.1016/j.acra.2008.07.007
-
(2008)
Acad. Radiol.
, vol.15
, pp. 1360-1375
-
-
Avants, B.1
Duda, J.T.2
Kim, J.3
Zhang, H.4
Pluta, J.5
Gee, J.C.6
-
4
-
-
65549127826
-
Morphological appearance manifolds in computational anatomy: Groupwise registration and morphological analysis
-
doi: 10.1016/j.neuroimage.2008.10.048
-
Baloch, S., and Davatzikos, C. (2009). Morphological appearance manifolds in computational anatomy: groupwise registration and morphological analysis. Neuroimage 45(1 Suppl), S73-S85. doi: 10.1016/j.neuroimage.2008.10.048
-
(2009)
Neuroimage
, vol.45
, Issue.1 SUPPL.
-
-
Baloch, S.1
Davatzikos, C.2
-
5
-
-
34547665010
-
Mapping cortical thickness in children with 22q11.2 deletions
-
doi: 10.1093/cercor/bhl097
-
Bearden, C. E., van Erp, T. G. M., Dutton, R. A., Tran, H., Zimmermann, L., Sun, D., et al. (2007). Mapping cortical thickness in children with 22q11.2 deletions. Cereb. Cortex 17, 1889-1898. doi: 10.1093/cercor/bhl097
-
(2007)
Cereb. Cortex
, vol.17
, pp. 1889-1898
-
-
Bearden, C.E.1
van Erp, T.G.M.2
Dutton, R.A.3
Tran, H.4
Zimmermann, L.5
Sun, D.6
-
6
-
-
0002649812
-
WaveLab and reproducible research
-
eds A. Antoniadis and G. Oppenheim (New York, NY: Springer)
-
Buckheit, J. B., and Donoho, D. L. (1995). "WaveLab and reproducible research, " in Wavelets and statistics, eds A. Antoniadis and G. Oppenheim (New York, NY: Springer), 55-81.
-
(1995)
Wavelets and statistics
, pp. 55-81
-
-
Buckheit, J.B.1
Donoho, D.L.2
-
7
-
-
37549061055
-
A simple fixed-point approach to invert a deformation field
-
doi: 10.1118/1.2816107
-
Chen, M., Lu, W., Chen, Q., Ruchala, K. J., and Olivera, G. H. (2008). A simple fixed-point approach to invert a deformation field. Med. Phys. 35, 81-88. doi: 10.1118/1.2816107
-
(2008)
Med. Phys.
, vol.35
, pp. 81-88
-
-
Chen, M.1
Lu, W.2
Chen, Q.3
Ruchala, K.J.4
Olivera, G.H.5
-
8
-
-
59449092567
-
Interactive deformation registration of endorectal prostate mri using itk thin plate splines
-
doi: 10.1016/j.acra.2008.09.011
-
Cheung, M. R., and Krishnan, K. (2009). Interactive deformation registration of endorectal prostate mri using itk thin plate splines. Acad. Radiol. 16, 351-357. doi: 10.1016/j.acra.2008.09.011
-
(2009)
Acad. Radiol.
, vol.16
, pp. 351-357
-
-
Cheung, M.R.1
Krishnan, K.2
-
9
-
-
0030269623
-
Deformable templates using large deformation kinematics
-
doi: 10.1109/83.536892
-
Christensen, G. E., Rabbitt, R. D., and Miller, M. I. (1996). Deformable templates using large deformation kinematics. IEEE Trans. Image Process. 5, 1435-1447. doi: 10.1109/83.536892
-
(1996)
IEEE Trans. Image Process.
, vol.5
, pp. 1435-1447
-
-
Christensen, G.E.1
Rabbitt, R.D.2
Miller, M.I.3
-
10
-
-
13244281724
-
Characterization of brain plasticity in schizophrenia using template deformation
-
doi: 10.1016/j.acra.2004.06.009
-
Dubb, A., Xie, Z., Gur, R., Gur, R., and Gee, J. (2005). Characterization of brain plasticity in schizophrenia using template deformation. Acad. Radiol. 12, 3-9. doi: 10.1016/j.acra.2004.06.009
-
(2005)
Acad. Radiol.
, vol.12
, pp. 3-9
-
-
Dubb, A.1
Xie, Z.2
Gur, R.3
Gur, R.4
Gee, J.5
-
11
-
-
85056039054
-
Atlas-guided segmentation of vervet monkey brain MRI
-
doi: 10.2174/1874440001105010186
-
Fedorov, A., Li, X., Pohl, K. M., Bouix, S., Styner, M., Addicott, M., et al. (2011). Atlas-guided segmentation of vervet monkey brain MRI. Open Neuroimag. J. 5, 186-197. doi: 10.2174/1874440001105010186
-
(2011)
Open Neuroimag. J.
, vol.5
, pp. 186-197
-
-
Fedorov, A.1
Li, X.2
Pohl, K.M.3
Bouix, S.4
Styner, M.5
Addicott, M.6
-
12
-
-
34347362934
-
A flexible registration and evaluation engine (f.r.e.e.)
-
doi: 10.1016/j.cmpb.2007.04.009
-
Floca, R., and Dickhaus, H. (2007). A flexible registration and evaluation engine (f.r.e.e.). Comput. Methods Programs Biomed. 87, 81-92. doi: 10.1016/j.cmpb.2007.04.009
-
(2007)
Comput. Methods Programs Biomed.
, vol.87
, pp. 81-92
-
-
Floca, R.1
Dickhaus, H.2
-
13
-
-
0034973515
-
Deformation-based morphometry and its relation to conventional volumetry of brain lateral ventricles in mri
-
doi: 10.1006/nimg.2001.0771
-
Gaser, C., Nenadic, I., Buchsbaum, B. R., Hazlett, E. A., and Buchsbaum, M. S. (2001). Deformation-based morphometry and its relation to conventional volumetry of brain lateral ventricles in mri. Neuroimage 13(6 pt 1), 1140-1145. doi: 10.1006/nimg.2001.0771
-
(2001)
Neuroimage
, vol.13
, Issue.6 PART 1
, pp. 1140-1145
-
-
Gaser, C.1
Nenadic, I.2
Buchsbaum, B.R.3
Hazlett, E.A.4
Buchsbaum, M.S.5
-
14
-
-
40849100053
-
Automatic segmentation of brain mris of 2-year-olds into 83 regions of interest
-
doi: 10.1016/j.neuroimage.2007.11.034
-
Gousias, I. S., Rueckert, D., Heckemann, R. A., Dyet, L. E., Boardman, J. P., Edwards, A. D., et al. (2008). Automatic segmentation of brain mris of 2-year-olds into 83 regions of interest. Neuroimage 40, 672-684. doi: 10.1016/j.neuroimage.2007.11.034
-
(2008)
Neuroimage
, vol.40
, pp. 672-684
-
-
Gousias, I.S.1
Rueckert, D.2
Heckemann, R.A.3
Dyet, L.E.4
Boardman, J.P.5
Edwards, A.D.6
-
15
-
-
0036891787
-
A variational approach to multi-modal image matching
-
doi: 10.1023/A:1020830525823
-
Hermosillo, G., Chefd'Hotel, C., and Faugeras, O. (2002). A variational approach to multi-modal image matching. Intl. J. Comp. Vis. 50, 329-343. doi: 10.1023/A:1020830525823
-
(2002)
Intl. J. Comp. Vis.
, vol.50
, pp. 329-343
-
-
Hermosillo, G.1
Chefd'Hotel, C.2
Faugeras, O.3
-
16
-
-
72049130805
-
Hypothetical model of dynamic biomarkers of the Alzheimer's pathological cascade
-
doi: 10.1016/S1474-4422(09)70299-6
-
Jack, C. R. Jr., Knopman, D. S., Jagust, W. J., Shaw, L. M., Aisen, P. S., Weiner, M. W., et al. (2010). Hypothetical model of dynamic biomarkers of the Alzheimer's pathological cascade. Lancet Neurol. 9, 119-128. doi: 10.1016/S1474-4422(09)70299-6
-
(2010)
Lancet Neurol.
, vol.9
, pp. 119-128
-
-
Jack Jr., C.R.1
Knopman, D.S.2
Jagust, W.J.3
Shaw, L.M.4
Aisen, P.S.5
Weiner, M.W.6
-
17
-
-
0035384136
-
A global optimisation method for robust affine registration of brain images
-
doi: 10.1016/S1361-8415(01)00036-6
-
Jenkinson, M., and Smith, S. (2001). A global optimisation method for robust affine registration of brain images. Med. Image Anal. 5, 143-156. doi: 10.1016/S1361-8415(01)00036-6
-
(2001)
Med. Image Anal.
, vol.5
, pp. 143-156
-
-
Jenkinson, M.1
Smith, S.2
-
18
-
-
84864614494
-
3d slicer as a tool for interactive brain tumor segmentation
-
doi: 10.1109/IEMBS.2011.6091765, 2011
-
Kikinis, R., and Pieper, S. (2011). 3d slicer as a tool for interactive brain tumor segmentation. Conf. Proc. IEEE Eng. Med. Biol. Soc. 2011, 6982-6984. doi: 10.1109/IEMBS.2011.6091765
-
(2011)
Conf. Proc. IEEE Eng. Med. Biol. Soc.
, pp. 6982-6984
-
-
Kikinis, R.1
Pieper, S.2
-
19
-
-
37849034065
-
Structural consequences of diffuse traumatic brain injury: A large deformation tensor-based morphometry study
-
doi: 10.1016/j.neuroimage.2007.10.005
-
Kim, J., Avants, B., Patel, S., Whyte, J., Coslett, B. H., Pluta, J., et al. (2008). Structural consequences of diffuse traumatic brain injury: a large deformation tensor-based morphometry study. Neuroimage 39, 1014-1026. doi: 10.1016/j.neuroimage.2007.10.005
-
(2008)
Neuroimage
, vol.39
, pp. 1014-1026
-
-
Kim, J.1
Avants, B.2
Patel, S.3
Whyte, J.4
Coslett, B.H.5
Pluta, J.6
-
20
-
-
84933673678
-
Methodological considerations in longitudinal morphometry of traumatic brain injury
-
doi: 10.3389/fnhum.2013.00052
-
Kim, J., Avants, B., Whyte, J., and Gee, J. C. (2013). Methodological considerations in longitudinal morphometry of traumatic brain injury. Front. Hum. Neurosci. 7:52. doi: 10.3389/fnhum.2013.00052
-
(2013)
Front. Hum. Neurosci.
, vol.7
, pp. 52
-
-
Kim, J.1
Avants, B.2
Whyte, J.3
Gee, J.C.4
-
21
-
-
77955889461
-
Resting cerebral blood flow alterations in chronic traumatic brain injury: An arterial spin labeling perfusion fmri study
-
doi: 10.1089/neu.2009.1215
-
Kim, J., Whyte, J., Patel, S., Avants, B., Europa, E., Wang, J., et al. (2010). Resting cerebral blood flow alterations in chronic traumatic brain injury: an arterial spin labeling perfusion fmri study. J. Neurotrauma 27, 1399-1411. doi: 10.1089/neu.2009.1215
-
(2010)
J. Neurotrauma
, vol.27
, pp. 1399-1411
-
-
Kim, J.1
Whyte, J.2
Patel, S.3
Avants, B.4
Europa, E.5
Wang, J.6
-
22
-
-
73849116467
-
Elastix: A toolbox for intensity-based medical image registration
-
doi: 10.1109/TMI.2009.2035616
-
Klein, S., Staring, M., Murphy, K., Viergever, M. A., and Pluim, J. P. W. (2010). elastix: a toolbox for intensity-based medical image registration. IEEE Trans. Med. Imaging 29, 196-205. doi: 10.1109/TMI.2009.2035616
-
(2010)
IEEE Trans. Med. Imaging
, vol.29
, pp. 196-205
-
-
Klein, S.1
Staring, M.2
Murphy, K.3
Viergever, M.A.4
Pluim, J.P.W.5
-
23
-
-
33750253230
-
Multivariate statistics of the jacobian matrices in tensor based morphometry and their application to hiv/aids
-
Lepore, N., Brun, C. A., Chiang, M.-C., Chou, Y.-Y., Dutton, R. A., Hayashi, K. M., et al. (2006). Multivariate statistics of the jacobian matrices in tensor based morphometry and their application to hiv/aids. Med. Image Comput. Comput. Assist. Interv. 9(pt 1), 191-198.
-
(2006)
Med. Image Comput. Comput. Assist. Interv.
, Issue.9 PART 1
, pp. 191-198
-
-
Lepore, N.1
Brun, C.A.2
Chiang, M.-C.3
Chou, Y.-Y.4
Dutton, R.A.5
Hayashi, K.M.6
-
24
-
-
79851511514
-
Nonrigid registration of dynamic medical imaging data using nd + t b-splines and a groupwise optimization approach
-
doi: 10.1016/j.media.2010.10.003
-
Metz, C. T., Klein, S., Schaap, M., van Walsum, T., and Niessen, W. J. (2011). Nonrigid registration of dynamic medical imaging data using nd + t b-splines and a groupwise optimization approach. Med. Image Anal. 15, 238-249. doi: 10.1016/j.media.2010.10.003
-
(2011)
Med. Image Anal.
, vol.15
, pp. 238-249
-
-
Metz, C.T.1
Klein, S.2
Schaap, M.3
van Walsum, T.4
Niessen, W.J.5
-
25
-
-
22144493784
-
Increasing the power of functional maps of the medial temporal lobe by using large deformation diffeomorphic metric mapping
-
doi: 10.1073/pnas.0503892102
-
Miller, M. I., Beg, M. F., Ceritoglu, C., and Stark, C. (2005). Increasing the power of functional maps of the medial temporal lobe by using large deformation diffeomorphic metric mapping. Proc. Natl. Acad. Sci. U.S.A. 102, 9685-9690. doi: 10.1073/pnas.0503892102
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 9685-9690
-
-
Miller, M.I.1
Beg, M.F.2
Ceritoglu, C.3
Stark, C.4
-
26
-
-
80455145309
-
Evaluation of registration methods on thoracic CT: The EMPIRE10 challenge
-
doi: 10.1109/TMI.2011.2158349
-
Murphy, K., van Ginneken, B., Reinhardt, J. M., Kabus, S., Ding, K., Deng, X., et al. (2011). Evaluation of registration methods on thoracic CT: the EMPIRE10 challenge. IEEE Trans. Med. Imaging 30, 1901-1920. doi: 10.1109/TMI.2011.2158349
-
(2011)
IEEE Trans. Med. Imaging
, vol.30
, pp. 1901-1920
-
-
Murphy, K.1
van Ginneken, B.2
Reinhardt, J.M.3
Kabus, S.4
Ding, K.5
Deng, X.6
-
27
-
-
0031250126
-
Regularization, scale-space, and edge detection filters
-
doi: 10.1023/A:1008282127190
-
Nielsen, M., Florack, L., and Deriche, R. (1997). Regularization, scale-space, and edge detection filters. J. Math. Imaging Vis. 7, 291-307. doi: 10.1023/A:1008282127190
-
(1997)
J. Math. Imaging Vis.
, vol.7
, pp. 291-307
-
-
Nielsen, M.1
Florack, L.2
Deriche, R.3
-
28
-
-
77954233638
-
Registration of 4d cardiac ct sequences under trajectory constraints with multichannel diffeomorphic demons
-
doi: 10.1109/TMI.2009.2038908
-
Peyrat, J.-M., Delingette, H., Sermesant, M., Xu, C., and Ayache, N. (2010). Registration of 4d cardiac ct sequences under trajectory constraints with multichannel diffeomorphic demons. IEEE Trans. Med. Imaging 29, 1351-1368. doi: 10.1109/TMI.2009.2038908
-
(2010)
IEEE Trans. Med. Imaging
, vol.29
, pp. 1351-1368
-
-
Peyrat, J.-M.1
Delingette, H.2
Sermesant, M.3
Xu, C.4
Ayache, N.5
-
29
-
-
3242672711
-
Characterizing changes in mr images with color-coded jacobians
-
doi: 10.1016/j.mri.2004.01.078
-
Riddle, W. R., Li, R., Fitzpatrick, J. M., DonLevy, S. C., Dawant, B. M., and Price, R. R. (2004). Characterizing changes in mr images with color-coded jacobians. Magn. Reson. Imaging 22, 769-777. doi: 10.1016/j.mri.2004.01.078
-
(2004)
Magn. Reson. Imaging
, vol.22
, pp. 769-777
-
-
Riddle, W.R.1
Li, R.2
Fitzpatrick, J.M.3
DonLevy, S.C.4
Dawant, B.M.5
Price, R.R.6
-
30
-
-
33645884097
-
Deformation-based brain morphometry to track the course of alcoholism: Differences between intra-subject and inter-subject analysis
-
doi: 10.1016/j.pscychresns.2005.12.002
-
Rohlfing, T., Sullivan, E. V., and Pfefferbaum, A. (2006). Deformation-based brain morphometry to track the course of alcoholism: differences between intra-subject and inter-subject analysis. Psychiatry Res. 146, 157-170. doi: 10.1016/j.pscychresns.2005.12.002
-
(2006)
Psychiatry Res.
, vol.146
, pp. 157-170
-
-
Rohlfing, T.1
Sullivan, E.V.2
Pfefferbaum, A.3
-
31
-
-
0033169211
-
Nonrigid registration using free-form deformations: Application to breast mr images
-
doi: 10.1109/42.796284
-
Rueckert, D., Sonoda, L. I., Hayes, C., Hill, D. L., Leach, M. O., and Hawkes, D. J. (1999). Nonrigid registration using free-form deformations: application to breast mr images. IEEE Trans. Med. Imaging 18, 712-721. doi: 10.1109/42.796284
-
(1999)
IEEE Trans. Med. Imaging
, vol.18
, pp. 712-721
-
-
Rueckert, D.1
Sonoda, L.I.2
Hayes, C.3
Hill, D.L.4
Leach, M.O.5
Hawkes, D.J.6
-
32
-
-
27144527257
-
Teaching medical image analysis with the insight toolkit
-
doi: 10.1016/j.media.2005.04.011
-
Shelton, D., Stetten, G., Aylward, S., Ibáñez, L., Cois, A., and Stewart, C. (2005). Teaching medical image analysis with the insight toolkit. Med. Image Anal. 9, 605-611. doi: 10.1016/j.media.2005.04.011
-
(2005)
Med. Image Anal.
, vol.9
, pp. 605-611
-
-
Shelton, D.1
Stetten, G.2
Aylward, S.3
Ibáñez, L.4
Cois, A.5
Stewart, C.6
-
33
-
-
79551680943
-
Population based analysis of directional information in serial deformation tensor morphometry
-
Studholme, C., and Cardenas, V. (2007). Population based analysis of directional information in serial deformation tensor morphometry. Med. Image Comput. Comput. Assist. Interv. 10(pt 2), 311-318.
-
(2007)
Med. Image Comput. Comput. Assist. Interv.
, vol.10
, Issue.PART 2
, pp. 311-318
-
-
Studholme, C.1
Cardenas, V.2
-
34
-
-
84899704776
-
Multivariate analysis of diffusion tensor imaging and cortical thickness maps in a traumatic brain injury (tbi) cohort using advanced normalization tools (ants) Journal of Neurotrauma 28 A111
-
(Hollywood Beach, FL)
-
Tustison, N., Avants, B., Cook, P., Kim, J., Whyte, J., Gee, J., et al. (2011). "Multivariate analysis of diffusion tensor imaging and cortical thickness maps in a traumatic brain injury (tbi) cohort using advanced normalization tools (ants) Journal of Neurotrauma 28 A111, " in 29th Annual National Neurotrauma Symposium (Hollywood Beach, FL).
-
(2011)
29th Annual National Neurotrauma Symposium
-
-
Tustison, N.1
Avants, B.2
Cook, P.3
Kim, J.4
Whyte, J.5
Gee, J.6
-
35
-
-
11044230905
-
Accuracy of rigid CT-FDG-PET image registration of the liver
-
doi: 10.1088/0031-9155/49/23/014
-
van Dalen, J. A., Vogel, W., Huisman, H. J., Oyen, W. J. G., Jager, G. J., and Karssemeijer, N. (2004). Accuracy of rigid CT-FDG-PET image registration of the liver. Phys. Med. Biol. 49, 5393-5405. doi: 10.1088/0031-9155/49/23/014
-
(2004)
Phys. Med. Biol.
, vol.49
, pp. 5393-5405
-
-
van Dalen, J.A.1
Vogel, W.2
Huisman, H.J.3
Oyen, W.J.G.4
Jager, G.J.5
Karssemeijer, N.6
-
36
-
-
63849264858
-
Diffeomorphic demons: Efficient non-parametric image registration
-
doi: 10.1016/j.neuroimage.2008.10.040
-
Vercauteren, T., Pennec, X., Perchant, A., and Ayache, N. (2009). Diffeomorphic demons: efficient non-parametric image registration. Neuroimage 45(1 Suppl), S61-S72. doi: 10.1016/j.neuroimage.2008.10.040
-
(2009)
Neuroimage
, vol.45
, Issue.1 SUPPL.
-
-
Vercauteren, T.1
Pennec, X.2
Perchant, A.3
Ayache, N.4
-
37
-
-
6944256790
-
Engineering and algorithm design for an image processing api: A technical report on itk-the insight toolkit
-
Yoo, T. S., Ackerman, M. J., Lorensen, W. E., Schroeder, W., Chalana, V., Aylward, S., et al. (2002). Engineering and algorithm design for an image processing api: a technical report on itk-the insight toolkit. Stud. Health Technol. Inform. 85, 586-592.
-
(2002)
Stud. Health Technol. Inform.
, vol.85
, pp. 586-592
-
-
Yoo, T.S.1
Ackerman, M.J.2
Lorensen, W.E.3
Schroeder, W.4
Chalana, V.5
Aylward, S.6
-
38
-
-
77952310359
-
Bias in estimation of hippocampal atrophy using deformation-based morphometry arises from asymmetric global normalization: An illustration in adni 3 t mri data
-
doi: 10.1016/j.neuroimage.2009.12.007
-
Yushkevich, P. A., Avants, B. B., Das, S. R., Pluta, J., Altinay, M., Craige, C., et al. (2010). Bias in estimation of hippocampal atrophy using deformation-based morphometry arises from asymmetric global normalization: an illustration in adni 3 t mri data. Neuroimage 50, 434-445. doi: 10.1016/j.neuroimage.2009.12.007
-
(2010)
Neuroimage
, vol.50
, pp. 434-445
-
-
Yushkevich, P.A.1
Avants, B.B.2
Das, S.R.3
Pluta, J.4
Altinay, M.5
Craige, C.6
|