Ultraweak photon emission and proteomics analyses in soybean under abiotic stress

Biochimica et Biophysica Acta - Proteins and Proteomics

Volumn 1844, Issue 7, 2014, Pages 1208-1218

  Komatsu, Setsuko ^a   Kamal, Abu Hena Mostafa ^a   Makino, Takahiro ^b   Hossain, Zahed ^c  

^a NATIONAL INSTITUTE OF CROP SCIENCE   (Japan)

^b GRADUATE SCHOOL FOR THE CREATION OF NEW PHOTONICS INDUSTRIES   (Japan)

^c WEST BENGAL STATE UNIVERSITY   (India)

Author keywords

Abiotic stress; Proteomics; Review; Soybean; Ultraweak photon emission

Indexed keywords

CADMIUM;

ABIOTIC STRESS; CROP; LYMPHOCYTE; NONHUMAN; PHOTON; PLANT RESPONSE; PRIORITY JOURNAL; PROTEOMICS; RESPIRATORY BURST; REVIEW; SOYBEAN; ULTRAWEAK PHOTON EMISSION;

ABIOTIC STRESS; PROTEOMICS; REVIEW; SOYBEAN; ULTRAWEAK PHOTON EMISSION;

PHOTONS; PROTEOME; PROTEOMICS; SOYBEANS; STRESS, PHYSIOLOGICAL;

EID: 84899677541     PISSN: 15709639     EISSN: 18781454     Source Type: Journal    
DOI: 10.1016/j.bbapap.2014.04.002     Document Type: Review

References (93)

1. M. Kobayashi, K. Sasaki, M. Enomoto, and Y. Ehara Highly sensitive determination of transient generation of biophotons during hypersensitive response to cucumber mosaic virus in cowpea J. Exp. Bot. 58 2007 465 472 (Pubitemid 46370585)
2. J.W. Mansfield Biophoton distress flares signal the onset of the hypersensitive reaction Trends Plant Sci. 10 2005 307 309 (Pubitemid 40912451)
3. M. Bennett, M. Mehta, and M. Grant Biophoton imaging: a nondestructive method for assaying R gene responses Mol. Plant Microbe Interact. 18 2005 95 102
4. T. Ohya, H. Kurashige, H. Okabe, and S. Kai Early detection of salt stress damage by biophoton in red bean seedling Jpn. J. Appl. Phys. 39 2000 3696 3700
5. T. Ohya, S. Yoshida, R. Kawabata, H. Okabe, and S. Kai Biophoton emission due to drought injury in red beans: possibility of early detection of drought injury Jpn. J. Appl. Phys. 41 2002 4766 4771
6. A. Prasad, and P. Pospisil Linoleic acid-induced ultra-weak photon emission from Chlamydomonas reinhardtii as a tool for monitoring of lipid peroxidation in the cell membranes PLoS One 6 2011 1 10
7. P. Roschger Biophoton response of plants due to environmental stress H. Inaba, The research report on Inaba biophoton project 1991 Japan Science and Technology Agency Tokyo 207 216
8. T. Makino, K. Kato, H. Iyozumi, H. Honzawa, and Y. Tachiiri et al. Ultraweak luminescence generated by sweet potato and Fusarium oxysporum interactions associated with a defense response Photochem. Photobiol. 64 1996 953 956 (Pubitemid 27058970)
9. M. Kobayashi Spontaneous ultraweak photon emission of living organisms-biophotons-phenomena and detection techniques for extracting biological information Trends Photochem. Photobiol. 10 2003 111 135
10. Y. Ehara Plant response to viruses Virus 60 1994 44 55 (In Japanese)
11. P. Roschger, R.Q. Scott, B. Devaraj, and H. Inaba Observation of phase transition in intact leaves by intrinsic lowlevel chemiluminescence Photochem. Photobiol. 57 1993 580 583
12. M. Kobayashi, B. Devaraj, M. Usa, Y. Tanno, M. Takeda, and H. Inaba Development and applications of new technology for two-dimensional space-time characterization and correlation analysis of ultraweak biophoton information Front. Med. Biol. Eng. 7 1996 299 309
13. M. Kobayashi, B. Devaraj, M. Usa, Y. Tanno, M. Takeda, and H. Inaba Two-dimensional imaging of ultraweak photon emission from germinating soybean seedlings with a highly sensitive CCD camera Photochem. Photobiol. 65 1997 535 537 (Pubitemid 27158993)
14. M. Havaux Spontaneous and thermo induced photon emission: new methods to detect and quantify oxidative stress in plants Trends Plant Sci. 8 2003 409 413 (Pubitemid 37216192)
15. S. Kai Biophoton: collection of photon-images Forma 27 2012 S45 S48
16. Y. Guo, and J. Tan A biophotonic sensing method for plant drought stress Sensors Actuators B Chem. 188 2013 519 524
17. Z. Hossain, T. Makino, and S. Komatsu Proteomic study of β-aminobutyric acid-mediated cadmium stress alleviation in soybean J. Proteome 75 2012 4151 4164
18. R. Kausar, Z. Hossain, T. Makino, and S. Komatsu Characterization of ascorbate peroxidase in soybean under flooding and drought stresses Mol. Biol. Rep. 39 2012 10573 10579
19. A. Khatoon, S. Rehman, S. Hiraga, T. Makino, and S. Komatsu Organ-specific proteomics analysis for identification of response mechanism in soybean seedlings under flooding stress J. Proteome 75 2012 5706 5723
20. S. Komatsu, C. Han, Y. Nanjo, M.A.U. Nahar, K. Wang, D. He, and P. Yang Label-free quantitative proteomic analysis of abscisic acid effect in early-stage soybean under flooding J. Proteome Res. 12 2013 4769 4784
21. S.S. Gill, and N. Tuteja Reactive oxygen species and antioxidant machinery in abiotic stress tolerance in crop plants Plant Physiol. Biochem. 48 2010 909 930
22. M.D. Temple, G.G. Perrone, and I.W. Dawes Complex cellular responses to reactive oxygen species Trends Cell Biol. 15 2005 319 326 (Pubitemid 40805328)
23. J.G. Scandalios Oxidative stress: molecular perception and transduction of signals triggering antioxidant gene defenses Braz. J. Med. Biol. Res. 38 2005 995 1014 (Pubitemid 41078961)
24. S. Bhattachrjee Reactive oxygen species and oxidative burst: roles in stress, senescence and signal transduction in plant Curr. Sci. 89 2005 1113 1121
25. V.P. Skulachev Membrane-linked systems preventing superoxide formation Biosci. Rep. 17 1997 347 366 (Pubitemid 27466758)
26. C.R. Lamb, and R.A. Dixon The oxidative burst in plant disease resistance Annu. Rev. Plant. Physiol. Plant. Mol. Biol. 48 1997 251 275
27. G. Noctor, and C.H. Foyer A re-evaluation of the ATP: NADPH budget during C3 photosynthesis. A contribution from nitrate assimilation and its associated respiratory activity? J. Exp. Bot. 49 1998 1895 1908 (Pubitemid 28560492)
28. E.L. Raven Peroxidase-catalyzed oxidation of ascorbate. Structural, spectroscopic and mechanistic correlations in ascorbate peroxidase Subcell. Biochem. 35 2000 317 349
29. G. Noctor, L. Gomez, H. Vanacker, and C.H. Foyer Interactions between biosynthesis, compartmentation, and transport in the control of glutathione homeostasis and signalling J. Exp. Bot. 53 2002 1283 1304 (Pubitemid 34544050)
30. N. Garg, and G. Manchanda ROS generation in plants: boon or bane? Plant Biosyst. 143 2009 8 96
31. 2 in the execution of hypersensitive cell death in tobacco leaves Plant Physiol. 138 2005 1516 1526 (Pubitemid 43142097)
32. K.J.A. Davies Oxidative stress, antioxidant defenses, and damage removal, repair, and replacement systems IUBMB Life 50 2001 279 289
33. S.S. Fam, and J.D. Morrow The isoprostanes: unique products of arachidonic acid oxidation Curr. Med. Chem. 10 2003 1723 1740 (Pubitemid 37038596)
34. C. Triantaphylidès, M. Krischke, F.A. Hoeberichts, B. Ksas, G. Gresser, M. Havaux, F.V. Breusegem, and M.J. Mueller Singlet oxygen is the major reactive oxygen species involved in photooxidative damage to plants Plant Physiol. 148 2008 960 968 (Pubitemid 352847552)
35. F.A. Popp Some essential questions of biophoton research and probable answers F.A. Popp, K.H. Li, Q. Gu, Recent advances in biophoton research and its applications 1992 World Scientific Publications Singapore 1 42
36. H. Inaba Ultraweak biophoton imaging and information characterization T. Sueta, T. Okoshi, Ultrafast and Ultra-Parallel Optoelectronics 1995 Ohmsha/John Wiley and Sons Tokyo 570 580
37. L. Colli, U. Facchini, G. Guidotti, R.D. Lonati, M. Orsenigo, and O. Sommariva Further measurements on the bioluminescence of seedlings Experientia 11 1955 479 481
38. L. Beloussov, F.A. Popp, V. Voeikovy, and R.V. Wijk Biophotonics and coherent systems in biology 2000 Moscow University Press Moscow 1 299
39. E. Bertogna, J. Bezerra, E. Conforti, and C.M. Gallep Acute stress in seedlings detected by ultra-weak photon emission J. Photochem. Photobiol. Biol. 118 2013 74 76
40. F.B. Abeles Plant chemiluminescence Annu. Rev. Plant Physiol. 37 1986 49 72
41. K. Radoc, C. Radenovic, and M. Jeremic Spontaneous ultraweak bioluminescence in plants: origin, mechanisms and properties Gen. Physiol. Biophys. 17 1998 289 308 (Pubitemid 128530144)
42. S. Suzuki, M. Usa, T. Nagoshi, M. Kobayashi, N. Watanabe, H. Watanabe, and H. Inaba Two-dimensional imaging and counting of ultraweak emission patterns from injured plant seedlings J. Photobiol. B Biol. 9 1991 211 217
43. J. Slawinski, E. Grabikowski, and L. Ciesla Spectral distribution of ultraweak luminescence from germinating plants J. Lumin. 24 1981 791 794
44. F. Musmeci, A. Triglia, and F. Grasso Experimental evidence on ultraweak photon emission from normal and tumour human tissues F.A. Popp, K.H. Li, Q. Gu, Recent advances in biophoton research and its applications 1992 World Scientific Publications Singapore 302 324
45. M. Kobayashi, M. Takeda, K. Ito, H. Kato, and H. Inaba Two-dimensional photon counting imaging and spatiotemporal characterization of ultraweak photon emission from a rat's brain in vivo J. Neurosci. Methods 93 1999 163 168
46. S. Agatsuma, T. Nagoshi, M. Kobatashi, M. Usa, H. Watanabe, H. Sekino, and H. Inaba Hydroxyl radical-induced characteristics chemiluminescent spectra from plasma of hemodialysis patients Clin. Chem. 38 1992 48 55
47. W. Bors, W. Heller, C. Michel, and M. Saran Flavonoids as antioxidants: determination of radical-scavenging efficiency Methods Enzymol. 186 1990 343 355 (Pubitemid 20279976)
48. K.E. Hammond-Kosack, and J.D.G. Jones Resistance gene-dependent plant defense responses Plant Cell 8 1996 1773 1791 (Pubitemid 27012404)
49. H. Nukui, H. Inagaki, H. Iyozumi, and K. Kato Biophoton emissions in sulfonylurea-herbicide-resistant weeds A.J. Price, J.A. Kelton, Herbicides - Advances in Research 2013 InTech Open Science Rijeka, Croatia 219 235
50. H. Iyozumi, K. Kato, C. Kageyama, H. Inagaki, A. Yamaguchi, K. Furuse, K. Baba, and H. Tsuchiya Plant defense activators potentiate the generation of elicitor-responsive photon emission in rice Physiol. Mol. Plant Pathol. 66 2005 68 74 (Pubitemid 41059554)
51. H. Iyozumi, K. Kato, and T. Makino Spectral shift of ultraweak photon emission from sweet potato during a defense response Photochem. Photobiol. 75 2002 322 325
52. C. Kageyama, K. Kato, H. Iyozumi, H. Inagaki, A. Yamaguchi, K. Furuse, and K. Baba Photon emissions from rice cells elicited by N- acetylchitooligosaccharide are generated through phospholipid signaling in close association with the production of reactive oxygen species Plant Physiol. Biochem. 44 2006 901 909 (Pubitemid 44918330)
53. S. Kai, T. Ohya, K. Moriya, and T. Fujimoto Growth control and biophoton radiation by plant hormones in red bean Jpn. J. Appl. Phys. 34 1995 6530 6538
54. N. Yoshinaga, K. Kato, C. Kageyama, K. Fujisaki, R. Nishida, and N. Mori Ultraweak photon emission from herbivory-injured maize plants Naturwissenschaften 93 2006 38 41 (Pubitemid 43144252)
55. A.S. Agaverdiyev, Y.E. Doskoch, and B.N. Tarusov Effect of low temperatures on the ultraweak luminescence of plants Biofizika 10 1965 832 836
56. S. Peng, J. Huang, J.E. Sheehy, R.C. Laza, R.M. Visperas, X. Zhong, G.S. Centeno, G.S. Khush, and K.G. Cassman Rice yields decline with higher night temperature from global warming Proc. Natl. Acad. Sci. U. S. A. 101 2004 9971 9975 (Pubitemid 38891180)
57. L. Taiz, and E. Zeiger Plant Physiology 2010 Sinauer Associates, Inc. Sunderland, MA
58. B. Huang, and C. Xu Identification and characterization of proteins associated with plant tolerance to heat stress J. Integr. Plant Biol. 50 2008 2008 1230 1237
59. T. Majoul, E. Bancel, E. Triboï, J. Ben Hamida, and G. Branlard Proteomic analysis of the effect of heat stress on hexaploid wheat grain: characterization of heat-responsive proteins from non-prolamins fraction Proteomics 4 2004 505 513 (Pubitemid 38235270)
60. M. Ribas-Carbo, N.L. Taylor, L. Giles, S. Busquets, P.M. Finnegan, D.A. Day, H. Lambers, H. Medrano, J.A. Berry, and J. Flexas Effects of water stress on respiration in soybean leaves Plant Physiol. 139 2005 466 473 (Pubitemid 43951629)
61. A.H. Kamal, K. Cho, J.S. Choi, Y. Jin, C.S. Park, J.S. Lee, and S.H. Woo Patterns of protein expression in water-stressed wheat chloroplasts Biol. Plant. 57 2013 305 312
62. R. Muthurajan, Z.S. Shobbar, S.V. Jagadish, R. Bruskiewich, A. Ismail, H. Leung, and J. Bennett Physiological and proteomic responses of rice peduncles to drought stress Mol. Biotechnol. 48 2011 173 182
63. X. Hu, X. Wu, C. Li, M. Lu, T. Liu, Y. Wang, and W. Wang Abscisic acid refines the synthesis of chloroplast proteins in maize (Zea mays) in response to drought and light PLoS One 7 2012 e49500
64. Z. Hossain, A. Khatoon, and S. Komatsu Soybean proteomics for unraveling abiotic stress response mechanism J. Proteome Res. 12 2013 4670 4684
65. A.H. Kamal, K. Cho, D.E. Kim, N. Uozumi, K.Y. Chung, S.Y. Lee, J.S. Choi, S.W. Cho, C.S. Shin, and S.H. Woo Changes in physiology and protein abundance in salt-stressed wheat chloroplasts Mol. Biol. Rep. 39 2012 9059 9074
66. J. Zhang, and M.B. Kirkham Drought stress induced changes in activities of superoxide dismutase, catalase, and peroxidase in wheat species Plant Cell Physiol. 35 1994 785 791 (Pubitemid 2136038)
67. O. Blokhina, E. Virolainen, and K.V. Fagerstedt Antioxidants, oxidative damage and oxygen deprivation stress: a review Ann. Bot. (Lond.) 91 2003 179 194
68. R. Perl-Treves, and A. Perl Oxidative stress: an introduction D. Inzé, M. Van Montagu, Oxidative Stress in Plants 2002 Taylor & Francis London, New York 1 32
69. A.H. Kamal, K. Cho, S. Komatsu, N. Uozumi, J.S. Choi, and S.H. Woo Towards an understanding of wheat chloroplasts: a methodical investigation of thylakoid proteome Mol. Biol. Rep. 39 2012 5069 5083
70. S. Komatsu, T. Makino, and H. Yasue Proteomic and biochemical analyses of the cotyledon and root of flooding-stressed soybean plants PLoS One 8 2013 e65301
71. F.M. Dupont Metabolic pathways of the wheat (Triticum aestivum) endosperm amyloplast revealed by proteomics BMC Plant Biol. 17 8 2008 39
72. A. Koller, M.P. Washburn, B.M. Lange, N.L. Andon, C. Deciu, P.A. Haynes, L. Hays, D. Schieltz, R. Ulaszek, J. Wei, D. Wolters, and J.R. Yates III Proteomic survey of metabolic pathways in rice Proc. Natl. Acad. Sci. U. S. A. 99 2002 11969 11974 (Pubitemid 34994508)
73. K.J. van Wijk Challenges and prospects of plant proteomics Plant Physiol. 126 2001 501 508 (Pubitemid 32566606)
74. Z. Hossain, M.Z. Nouri, and S. Komatsu Plant cell organelle proteomics in response to abiotic stress J. Proteome Res. 11 2012 37 48
75. A.H. Millar, L.J. Sweetlove, P. Giege, and C.J. Leaver Analysis of the Arabidopsis mitochondrial proteome Plant Physiol. 127 2001 1711 1727 (Pubitemid 34054211)
76. S. Komatsu, A. Yamamoto, T. Nakamura, M.Z. Nouri, Y. Nanjo, K. Nishizawa, and K. Furukawa Comprehensive analysis of mitochondria in roots and hypocotyls of soybean under flooding stress using proteomics and metabolomics techniques J. Proteome Res. 10 2011 3993 4004
77. G. Friso, L. Giacomelli, A.J. Ytterberg, J.B. Peltier, A. Rudella, Q. Sun, and K.J. van Wijk In depth analysis of the thylakoid membrane proteome of Arabidopsis thaliana chloroplasts: new proteins, new functions, and a plastid proteome database Plant Cell 16 2004 478 499 (Pubitemid 38192704)
78. J.B. Peltier, A.J. Ytterberg, Q. Sun, and K.J. van Wijk New functions of the thylakoid membrane proteome of Arabidopsis thaliana revealed by a simple, fast, and versatile fractionation strategy J. Biol. Chem. 279 2004 49367 49383 (Pubitemid 39625823)
79. S.K. Mitra, J.A. Gantt, J.F. Ruby, S.D. Clouse, and M.B. Goshe Membrane proteomic analysis of Arabidopsis thaliana using alternative solubilization techniques J. Proteome Res. 6 2007 1933 1950 (Pubitemid 46814515)
80. S. Komatsu, T. Wada, Y. Abaléa, M.Z. Nouri, Y. Nanjo, N. Nakayama, S. Shimamura, R. Yamamoto, T. Nakamura, and K. Furukawa Analysis of plasma membrane proteome in soybean and application to flooding stress response J. Proteome Res. 8 2009 4487 4499
81. Y. Fukao, M. Hayashi, and M. Nishimura Proteomic analysis of leaf peroxisomal proteins in greening cotyledons of Arabidopsis thaliana Plant Cell Physiol. 43 2002 689 696 (Pubitemid 34881473)
82. D.J. Maltman, W.J. Simon, C.H. Wheeler, M.J. Dunn, R. Wait, and A.R. Slabas Proteomic analysis of the endoplasmic reticulum from developing and germinating seed of castor (Ricinus communis) Electrophoresis 23 2002 626 629
83. S. Komatsu, R. Kuji, Y. Nanjo, S. Hiraga, and K. Furukawa Comprehensive analysis of endoplasmic reticulum-enriched fraction in root tips of soybean under flooding stress using proteomics techniques J. Proteome 77 2012 531 560
84. S. Chivasa, B.K. Ndimba, W.J. Simon, and D. Robertson Proteomic analysis of the Arabidopsis thaliana cell wall Electrophoresis 23 2002 1754 1765 (Pubitemid 34727619)
85. S. Komatsu, and Y. Yanagawa Cell wall proteomics of crops Front. Plant Sci. 4 2013 17
86. R.F. Degenhardt, and P.C. Bonham-Smith Arabidopsis ribosomal proteins RPL23aA and RPL23aB are differentially targeted to the nucleolus and are disparately required for normal development Plant Physiol. 147 2008 128 142 (Pubitemid 352844348)
87. M. Ferro, D. Salvi, S. Brugière, S. Miras, S. Kowalski, M. Louwagie, J. Garin, J. Joyard, and N. Rolland Proteomics of the chloroplast envelope membranes from Arabidopsis thaliana Mol. Cell. Proteomics 2 2003 325 345
88. R. Schwacke, A. Schneider, E. van der Graaff, K. Fischer, E. Catoni, M. Desimone, W.B. Frommer, U.I. Flugge, and R. Kunze ARAMEMNON, a novel database for Arabidopsis integral membrane proteins Plant Physiol. 131 2003 16 26 (Pubitemid 36141203)
89. J.L. Heazlewood, J. Tonti-Filippini, R.E. Verboom, and A.H. Millar Combining experimental and predicted datasets for determination of the subcellular location of proteins in Arabidopsis Plant Physiol. 139 2005 598 609 (Pubitemid 43907090)
90. S. Komatsu Rice proteome database: a step toward functional analysis of the rice genome Plant Mol. Biol. 59 2005 179 190 (Pubitemid 41429428)
91. T.S. Nühse, A. Stensballe, O.N. Jensen, and S.C. Peck Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database Plant Cell 16 2004 2394 2405 (Pubitemid 39247080)
92. T. Kleffmann, D. Russenberger, A. von Zychlinski, W. Christopher, K. Sjolander, W. Gruissem, and S. Baginsky The Arabidopsis thaliana chloroplast proteome reveals pathway abundance and novel protein functions Curr. Biol. 14 2004 354 362 (Pubitemid 38431168)
93. M. Takeda, M. Kobayashi, M. Takayama, S. Suzuki, T. Ishida, K. Ohnuki, T. Moriya, and N. Ohuchi Biophoton detection as a novel technique for cancer imaging Cancer Sci. 95 2004 656 661 (Pubitemid 39255813)