Spectrum of Fates: A new approach to the study of the developing zebrafish retina

Development (Cambridge)

Volumn 141, Issue 9, 2014, Pages 1971-1980

  Almeida, Alexandra D ^a   Boije, Henrik ^a   Chow, Renee W ^a   He, Jie ^a,b   Tham, Jonathan ^a   Suzuki, Sachihiro C ^c   Harris, William A ^a  

^a UNIVERSITY OF CAMBRIDGE   (United Kingdom)

^b INSTITUTE OF GEOLOGY AND GEOPHYSICS   (China)

^c UNIVERSITY OF WASHINGTON   (United States)

Author keywords

Cell fate; Differentiation; Fluorescent proteins; Neuron; Retina; Zebrafish

Indexed keywords

TRANSCRIPTION FACTOR;

ARTICLE; CELL COMPOSITION; CELL DIFFERENTIATION; CELL DIVISION; CELL FATE; CELL MATURATION; CELL TYPE; FLOW CYTOMETRY; GLIA CELL; HISTOGENESIS; NEUROPIL; NONHUMAN; PHOTORECEPTOR; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN EXPRESSION; RETINA AMACRINE CELL; RETINA DEVELOPMENT; RETINA GANGLION CELL; RETINA NERVE CELL; ZEBRA FISH;

CELL FATE; DIFFERENTIATION; FLUORESCENT PROTEINS; NEURON; RETINA; ZEBRAFISH;

ANIMALS; ANIMALS, GENETICALLY MODIFIED; CELL DIFFERENTIATION; CELL LINEAGE; CELL PROLIFERATION; CELLS, CULTURED; CLONE CELLS; FLUORESCENCE; GENETIC TECHNIQUES; LUMINESCENT PROTEINS; RETINA; ZEBRAFISH;

EID: 84899630243     PISSN: 09501991     EISSN: 14779129     Source Type: Journal    
DOI: 10.1242/dev.104760     Document Type: Article

References (46)

1. Akitake, C. M., Macurak, M., Halpern, M. E. and Goll, M. G. (2011). Transgenerational analysis of transcriptional silencing in zebrafish. Dev. Biol. 352, 191-201.
2. Belecky-Adams, T., Cook, B. and Adler, R. (1996). Correlations between terminal mitosis and differentiated fate of retinal precursor cells in vivo and in vitro: analysis with the "window-labeling" technique. Dev. Biol. 178, 304-315.
3. Bernardos, R. L., Barthel, L. K., Meyers, J. R. and Raymond, P. A. (2007). Latestage neuronal progenitors in the retina are radial Muller glia that function as retinal stem cells. J. Neurosci. 27, 7028-7040.
4. Brown, N. L., Patel, S., Brzezinski, J. and Glaser, T. (2001). Math5 is required for retinal ganglion cell and optic nerve formation. Development 128, 2497-2508.
5. Chung, K., Wallace, J., Kim, S.-Y., Kalyanasundaram, S., Andalman, A. S., Davidson, T. J., Mirzabekov, J. J., Zalocusky, K. A., Mattis, J., Denisin, A. K. et al. (2013). Structural and molecular interrogation of intact biological systems. Nature 497, 332-337.
6. Dullin, J.-P., Locker, M., Robach, M., Henningfeld, K. A., Parain, K., Afelik, S., Pieler, T. and Perron, M. (2007). Ptf1a triggers GABAergic neuronal cell fates in the retina. BMC Dev. Biol. 7, 110.
7. Fujitani, Y., Fujitani, S., Luo, H., Qiu, F., Burlison, J., Long, Q., Kawaguchi, Y., Edlund, H., MacDonald, R. J., Furukawa, T. et al. (2006). Ptf1a determines horizontal and amacrine cell fates during mouse retinal development. Development 133, 4439-4450.
8. Giepmans, B. N., Adams, S. R., Ellisman, M. H. and Tsien, R. Y. (2006). The fluorescent toolbox for assessing protein location and function. Science 312, 217-224.
9. Godinho, L., Mumm, J. S., Williams, P. R., Schroeter, E. H., Koerber, A., Park, S. W., Leach, S. D. and Wong, R. O. L. (2005). Targeting of amacrine cell neurites to appropriate synaptic laminae in the developing zebrafish retina. Development 132, 5069-5079.
10. Gomes, F. L., Zhang, G., Carbonell, F., Correa, J. A., Harris, W. A., Simons, B. D. and Cayouette, M. (2011). Reconstruction of rat retinal progenitor cell lineages in vitro reveals a surprising degree of stochasticity in cell fate decisions. Development 138, 227-235.
11. Hama, H., Kurokawa, H., Kawano, H., Ando, R., Shimogori, T., Noda, H., Fukami, K., Sakaue-Sawano, A. and Miyawaki, A. (2011). Scale: a chemical approach for fluorescence imaging and reconstruction of transparent mouse brain. Nat. Neurosci. 14, 1481-1488.
12. Harris, W. A. and Messersmith, S. L. (1992). Two cellular inductions involved in photoreceptor determination in the Xenopus retina. Neuron 9, 357-372.
13. He, J., Zhang, G., Almeida, A. D., Cayouette, M., Simons, B. D. and Harris, W. A. (2012). How variable clones build an invariant retina. Neuron 75, 786-798.
14. Holt, C. E., Bertsch, T. W., Ellis, H. M. and Harris, W. A. (1988). Cellular determination in the Xenopus retina is independent of lineage and birth date. Neuron 1, 15-26.
15. Hu, M. and Easter, S. S. (1999). Retinal neurogenesis: the formation of the initial central patch of postmitotic cells. Dev. Biol. 207, 309-321.
16. Jusuf, P. R., Almeida, A. D., Randlett, O., Joubin, K., Poggi, L. and Harris, W. A. (2011). Origin and determination of inhibitory cell lineages in the vertebrate retina. J. Neurosci. 31, 2549-2562.
17. Kanekar, S., Perron, M., Dorsky, R., Harris, W. A., Jan, L. Y., Jan, Y. N. and Vetter, M. L. (1997). Xath5 participates in a network of bHLH genes in the developing Xenopus retina. Neuron 19, 981-994.
18. Kay, J. N., Finger-Baier, K. C., Roeser, T., Staub, W. and Baier, H. (2001). Retinal ganglion cell genesis requires lakritz, a Zebrafish atonal Homolog. Neuron 30, 725-736.
19. Ke, M.-T., Fujimoto, S. and Imai, T. (2013). SeeDB: a simple and morphologypreserving optical clearing agent for neuronal circuit reconstruction. Nat. Neurosci. 16, 1154-1161.
20. Kimmel, C. B., Warga, R. M. and Schilling, T. F. (1990). Origin and organization of the zebrafish fate map. Development 108, 581-594.
21. Kimura, Y., Okamura, Y. and Higashijima, S.-I. (2006). alx, a zebrafish homolog of Chx10, marks ipsilateral descending excitatory interneurons that participate in the regulation of spinal locomotor circuits. J. Neurosci. 26, 5684-5697.
22. Li, Y., Lu, H., Cheng, P. L., Ge, S. Y., Xu, H. T., Shi, S. H. and Dan, Y. (2012). Clonally related visual cortical neurons show similar stimulus feature selectivity. Nature 486, 118-121.
23. Lin, J. W., Biankin, A. V., Horb, M. E., Ghosh, B., Prasad, N. B., Yee, N. S., Pack, M. A. and Leach, S. D. (2004). Differential requirement for ptf1a in endocrine and exocrine lineages of developing zebrafish pancreas. Dev. Biol. 274, 491-503.
24. Liu, Y., Shen, Y., Rest, J. S., Raymond, P. A. and Zack, D. J. (2001). Isolation and characterization of a zebrafish homologue of the cone rod homeobox gene. Invest. Ophthalmol. Vis. Sci. 42, 481-487.
25. Livesey, F. J. and Cepko, C. L. (2001). Vertebrate neural cell-fate determination: lessons from the retina. Nat. Rev. Neurosci. 2, 109-118.
26. Livet, J., Weissman, T. A., Kang, H., Draft, R. W., Lu, J., Bennis, R. A., Sanes, J. R. and Lichtman, J. W. (2007). Transgenic strategies for combinatorial expression of fluorescent proteins in the nervous system. Nature 450, 56-62.
27. Masai, I., Stemple, D. L., Okamoto, H. and Wilson, S. W. (2000). Midline signals regulate retinal neurogenesis in zebrafish. Neuron 27, 251-263.
28. Nakhai, H., Sel, S., Favor, J., Mendoza-Torres, L., Paulsen, F., Duncker, G. I. W. and Schmid, R. M. (2007). Ptf1a is essential for the differentiation of GABAergic and glycinergic amacrine cells and horizontal cells in the mouse retina. Development 134, 1151-1160.
29. Neumann, C. J. and Nuesslein-Volhard, C. (2000). Patterning of the zebrafish retina by a wave of sonic hedgehog activity. Science 289, 2137-2139.
30. Ohtsuki, G., Nishiyama, M., Yoshida, T., Murakami, T., Histed, M., Lois, C. and Ohki, K. (2012). Similarity of visual selectivity among clonally related neurons in visual cortex. Neuron 75, 65-72.
31. Pan, Y. A., Freundlich, T., Weissman, T. A., Schoppik, D., Wang, X. C., Zimmerman, S., Ciruna, B., Sanes, J. R., Lichtman, J. W. and Schier, A. F. (2013). Zebrabow: multispectral cell labeling for cell tracing and lineage analysis in zebrafish. Development 140, 2835-2846.
32. Pisharath, H. and Parsons, M. J. (2009). Nitroreductase-mediated cell ablation in transgenic zebrafish embryos. Methods Mol. Biol. 546, 133-143.
33. Pittman, A. J., Law, M.-Y. and Chien, C.-B. (2008). Pathfinding in a large vertebrate axon tract: isotypic interactions guide retinotectal axons at multiple choice points. Development 135, 2865-2871.
34. Poggi, L., Vitorino, M., Masai, I. and Harris, W. A. (2005). Influences on neural lineage and mode of division in the zebrafish retina in vivo. J. Cell. Biol. 171, 991-999.
35. Randlett, O., MacDonald, R. B., Yoshimatsu, T., Almeida, A. D., Suzuki, S. C., Wong, R. O. and Harris, W. A. (2013). Cellular requirements for building a retinal neuropil. Cell. Rep. 3, 282-290.
36. Rapaport, D. H., Wong, L. L., Wood, E. D., Yasumura, D. and LaVail, M. M. (2004). Timing and topography of cell genesis in the rat retina. J. Comp. Neurol. 474, 304-324.
37. Schmitt, E. A. and Dowling, J. E. (1999). Early retinal development in the zebrafish, Danio rerio: light and electron microscopic analyses. J. Comp. Neurol. 404, 515-536.
38. Shen, Y.-C. and Raymond, P. A. (2004). Zebrafish cone-rod (crx) homeobox gene promotes retinogenesis. Dev. Biol. 269, 237-251.
39. Suzuki, S. C., Bleckert, A., Williams, P. R., Takechi, M., Kawamura, S. and Wong, R. O. L. (2013). Cone photoreceptor types in zebrafish are generated by symmetric terminal divisions of dedicated precursors. Proc. Natl. Acad. Sci. U. S. A. 110, 15109-15114.
40. Thummel, R., Kassen, S. C., Enright, J. M., Nelson, C. M., Montgomery, J. E. and Hyde, D. R. (2008). Characterization of Muller glia and neuronal progenitors during adult zebrafish retinal regeneration. Exp. Eye Res. 87, 433-444.
41. Turner, D. L. and Cepko, C. L. (1987). A common progenitor for neurons and glia persists in rat retina late in development. Nature 328, 131-136.
42. Vitorino, M., Jusuf, P. R., Maurus, D., Kimura, Y., Higashijima, S.-I. and Harris, W. A. (2009). Vsx2 in the zebrafish retina: restricted lineages through derepression. Neural Dev. 4, 14.
43. Wang, S. W., Kim, B. S., Ding, K., Wang, H., Sun, D., Johnson, R. L., Klein, W. H. and Gan, L. (2001). Requirement for math5 in the development of retinal ganglion cells. Genes Dev. 15, 24-29.
44. Wetts, R. and Fraser, S. E. (1988). Multipotent precursors can give rise to all major cell-types of the frog retina. Science 239, 1142-1145.
45. Williams, P. R., Suzuki, S. C., Yoshimatsu, T., Lawrence, O. T., Waldron, S. J., Parsons, M. J., Nonet, M. L. and Wong, R. O. L. (2010). In vivo development of outer retinal synapses in the absence of glial contact. J. Neurosci. 30, 11951-11961.
46. Zolessi, F. R., Poggi, L., Wilkinson, C. J., Chien, C.-B. and Harris, W. A. (2006). Polarization and orientation of retinal ganglion cells in vivo. Neural Dev. 1, 2.