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Volumn 9, Issue 4, 2014, Pages

Transcriptome sequencing and gene expression analysis of Trichoderma brevicompactum under different culture conditions

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL CELL; ARTICLE; BIOSYNTHESIS; GENE EXPRESSION PROFILING; GENE IDENTIFICATION; GENE LIBRARY; GENE MAPPING; GENE SEQUENCE; GENE STRUCTURE; GENETIC ANALYZER; GENETIC TRANSCRIPTION; GENETIC VARIABILITY; MOLECULAR MECHANICS; NONHUMAN; QUANTITATIVE STUDY; REAL TIME POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS; TRICHODERMA; TRICHODERMA BREVICOMPACTUM; CULTURE TECHNIQUE; DNA SEQUENCE; GENE ONTOLOGY; GENETICS; GROWTH, DEVELOPMENT AND AGING; METABOLISM; MOLECULAR GENETICS;

EID: 84899464254     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0094203     Document Type: Article
Times cited : (23)

References (33)
  • 2
    • 78751617963 scopus 로고    scopus 로고
    • Overexpression of the trichodiene synthase gene tri5 increases trichodermin production and antimicrobial activity in Trichoderma brevicompactum
    • Tijerino A, Cardoza RE, Moraga J, Malmierca MG, Vicente F, et al. (2011) Overexpression of the trichodiene synthase gene tri5 increases trichodermin production and antimicrobial activity in Trichoderma brevicompactum. Fungal Genetics and Biology 48: 285-296.
    • (2011) Fungal Genetics and Biology , vol.48 , pp. 285-296
    • Tijerino, A.1    Cardoza, R.E.2    Moraga, J.3    Malmierca, M.G.4    Vicente, F.5
  • 4
    • 48349131023 scopus 로고    scopus 로고
    • The Trichoderma brevicompactum clade: A separate lineage with new species, new peptaibiotics, and mycotoxins
    • Degenkolb T, Dieckmann R, Nielsen KF, Gräfenhan T, Theis C, et al. (2008) The Trichoderma brevicompactum clade: a separate lineage with new species, new peptaibiotics, and mycotoxins. Mycol Progress 7: 177-219.
    • (2008) Mycol Progress , vol.7 , pp. 177-219
    • Degenkolb, T.1    Dieckmann, R.2    Nielsen, K.F.3    Gräfenhan, T.4    Theis, C.5
  • 6
    • 0015690950 scopus 로고
    • Peptidyltransferase inhibition by trichodermin
    • Tate WP, Caskey CT (1973) Peptidyltransferase inhibition by trichodermin. J Bio Chem 22: 7970-7972.
    • (1973) J Bio Chem , vol.22 , pp. 7970-7972
    • Tate, W.P.1    Caskey, C.T.2
  • 7
    • 33847717080 scopus 로고    scopus 로고
    • The trichothecenes and their biosynthesis
    • Grove JF (2007) The trichothecenes and their biosynthesis. Fortschr Chem Org Naturst 88: 63-130.
    • (2007) Fortschr Chem Org Naturst , vol.88 , pp. 63-130
    • Grove, J.F.1
  • 8
    • 0012326192 scopus 로고
    • Biosynthesis and regulation of trichothecene production by Fusarium species
    • Bhatnagar D, Lilehoj EB, Arora DK (Eds), Handbook of Applied Mycology. Marcel Dekker, Inc., New York, USA
    • Beremand MN, Mc Cormick SP (1992) Biosynthesis and regulation of trichothecene production by Fusarium species. In: Bhatnagar D, Lilehoj EB, Arora DK (Eds), Handbook of Applied Mycology. Mycotoxins in Ecological Systems, vol. 5. Marcel Dekker, Inc., New York, USA, pp.360-389.
    • (1992) Mycotoxins in Ecological Systems , vol.5 , pp. 360-389
    • Beremand, M.N.1    Mc Cormick, S.P.2
  • 9
    • 34848887815 scopus 로고    scopus 로고
    • Molecular and genetic studies of Fusarium trichothecene biosynthesis: Pathways, genes, and evolution
    • DOI 10.1271/bbb.70183
    • Kimura M, Tokai T, Takahashi-Ando N, Ohsato S, Fujita M (2007) Molecular and genetic studies of Fusarium trichothecene biosynthesis: pathways, genes, and evolution. Biosci Biotechnol Biochem 71: 2105-2123. (Pubitemid 350113090)
    • (2007) Bioscience, Biotechnology and Biochemistry , vol.71 , Issue.9 , pp. 2105-2123
    • Kimura, M.1    Tokai, T.2    Takahashi-Ando, N.3    Ohsato, S.4    Fujimura, M.5
  • 10
    • 1442358129 scopus 로고    scopus 로고
    • Functional demarcation of the Fusarium core trichothecene gene cluster
    • DOI 10.1016/j.fgb.2003.12.002, PII S1087184503002135
    • Brown DW, Dyer RB, Mc Cormick SP, Kendra DF, Plattner RD (2004) Functional demarcation of the Fusarium core trichothecene gene cluster. Fungal Genet Biol 41: 454-462. (Pubitemid 38283834)
    • (2004) Fungal Genetics and Biology , vol.41 , Issue.4 , pp. 454-462
    • Brown, D.W.1    Dyer, R.B.2    McCormick, S.P.3    Kendra, D.F.4    Plattner, R.D.5
  • 12
    • 79961092513 scopus 로고    scopus 로고
    • Identification of loci and functional characterization of trichothecene biosynthetic genes in the filamentous fungus Trichoderma
    • Cardoza RE, Malmierca MG, Hermosa MR, Alexander NJ, Mccormick SP, et al. (2011) Identification of loci and functional characterization of trichothecene biosynthetic genes in the filamentous fungus Trichoderma . Appl Environ Microbiol 77: 4867-4877.
    • (2011) Appl Environ Microbiol , vol.77 , pp. 4867-4877
    • Cardoza, R.E.1    Malmierca, M.G.2    Hermosa, M.R.3    Alexander, N.J.4    Mccormick, S.P.5
  • 13
    • 43449098828 scopus 로고    scopus 로고
    • Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina)
    • Martinez D, Berka RM, H enrissat B, Saloheimo M, Arvas M, et al. (2008) Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina) . Nat Biotechnol 26: 553-561.
    • (2008) Nat Biotechnol , vol.26 , pp. 553-561
    • Martinez, D.1    Berka, R.M.2    Henrissat, B.3    Saloheimo, M.4    Arvas, M.5
  • 14
    • 79955115574 scopus 로고    scopus 로고
    • Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma
    • Kubicek CP, Herrera- Estrella A, Seidl-Seiboth V, Martinez DA, Druzhinina IS, et al. (2011) Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma. Genome Biol 12: 1-15.
    • (2011) Genome Biol , vol.12 , pp. 1-15
    • Kubicek, C.P.1    Herrera-Estrella, A.2    Seidl-Seiboth, V.3    Martinez, D.A.4    Druzhinina, I.S.5
  • 15
    • 67349209853 scopus 로고    scopus 로고
    • Next-generation DNA sequencing techniques
    • Ansorge WJ (2009) Next-generation DNA sequencing techniques. N Biotechnol 25: 195-203.
    • (2009) N Biotechnol , vol.25 , pp. 195-203
    • Ansorge, W.J.1
  • 16
    • 78650145074 scopus 로고    scopus 로고
    • Transcriptome analysis of the brown planthopper Nilaparvata lugens
    • Xue J, Bao YY, Li BL, Cheng YB, Peng ZY, et al. (2010) Transcriptome analysis of the brown planthopper Nilaparvata lugens . PlosOne 5: e14233.
    • (2010) PlosOne , vol.5
    • Xue, J.1    Bao, Y.Y.2    Li, B.L.3    Cheng, Y.B.4    Peng, Z.Y.5
  • 17
    • 77954450225 scopus 로고    scopus 로고
    • De novo characterization of a whitefly transcriptome and analysis of its gene expression during development
    • Wang XW, Luan JB, Li JM, Bao YY, Zhang CX, et al. (2010) De novo characterization of a whitefly transcriptome and analysis of its gene expression during development. BMC Genomics11: 400-410.
    • (2010) BMC Genomics , vol.11 , pp. 400-410
    • Wang, X.W.1    Luan, J.B.2    Li, J.M.3    Bao, Y.Y.4    Zhang, C.X.5
  • 18
    • 78649969759 scopus 로고    scopus 로고
    • De Novo Transcriptome sequencing in Anopheles funestus using Illumina RNA-Seq technology
    • Crawford JE, Guelbeogo WM, Sanou A, Traore' A, Vernick KD, et al. (2010) De Novo Transcriptome sequencing in Anopheles funestus using Illumina RNA-Seq technology. PlosOne 5: e14202.
    • (2010) PlosOne , vol.5
    • Crawford, J.E.1    Guelbeogo, W.M.2    Sanou, A.3    Traore', A.4    Vernick, K.D.5
  • 19
    • 36849073678 scopus 로고    scopus 로고
    • Sequencing breakthroughs for genomic ecology and evolutionary biology
    • Hudson HE (2008) Sequencing breakthroughs for genomic ecology and evolutionary biology. Mol Ecol Resour 8: 3-17.
    • (2008) Mol Ecol Resour , vol.8 , pp. 3-17
    • Hudson, H.E.1
  • 20
    • 57649114637 scopus 로고    scopus 로고
    • Identification and quantification of trichodermin in fermentation by GC
    • Shentu XP, Shi YJ, Yu XP (2008) Identification and quantification of trichodermin in fermentation by GC. Chin Pharm J 43:1755-1756.
    • (2008) Chin Pharm J , vol.43 , pp. 1755-1756
    • Shentu, X.P.1    Shi, Y.J.2    Yu, X.P.3
  • 21
    • 79960264362 scopus 로고    scopus 로고
    • Full-length transcriptome assembly from RNA-Seq data without a reference genome
    • Grabherr MG, Haas BJ, Yassour M, Levin JZ, Thompson DA, et al. (2011) Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat Biotechnol 29: 644-665.
    • (2011) Nat Biotechnol , vol.29 , pp. 644-665
    • Grabherr, M.G.1    Haas, B.J.2    Yassour, M.3    Levin, J.Z.4    Thompson, D.A.5
  • 25
    • 0030681260 scopus 로고    scopus 로고
    • The significance of digital gene expression profiles
    • Audic S, Claverie JM (1997) The significance of digital gene expression profiles. Genome Res 7: 986-995. (Pubitemid 27487763)
    • (1997) Genome Research , vol.7 , Issue.10 , pp. 986-995
    • Audic, S.1    Claverie, J.-M.2
  • 26
    • 0035733108 scopus 로고    scopus 로고
    • The control of the false discovery rate in multiple testing under dependency
    • DOI 10.1214/aos/1013699998
    • Benjamini Y, Yekutieli D (2001) The control of the false discovery rate in multiple testing under dependency. The Annals of Statistics 29: 1165-1188. (Pubitemid 33575263)
    • (2001) Annals of Statistics , vol.29 , Issue.4 , pp. 1165-1188
    • Benjamini, Y.1    Yekutieli, D.2
  • 28
    • 33847389939 scopus 로고    scopus 로고
    • Partial silencing of a hydroxy-methylglutaryl-CoA reductase-encoding gene in Trichoderma harzianum CECT 2413 results in a lower level of resistance to lovastatin and lower antifungal activity
    • DOI 10.1016/j.fgb.2006.11.013, PII S1087184506002118
    • Cardoza R E, Hermosa M R, Vizcai'no J A, Gonza'lez F, Llobell A, et al. (2007) Partial silencing of a hydroxy-methylglutaryl-CoA reductase-encoding gene in Trichoderma harzianum CECT 2413 results in a lower level of resistance to lovastatin and lower antifungal activity. Fungal Genet Biol 44:269-283. (Pubitemid 46335883)
    • (2007) Fungal Genetics and Biology , vol.44 , Issue.4 , pp. 269-283
    • Cardoza, R.E.1    Hermosa, M.R.2    Vizcaino, J.A.3    Gonzalez, F.4    Llobell, A.5    Monte, E.6    Gutierrez, S.7
  • 29
    • 57749175974 scopus 로고    scopus 로고
    • Thctf1 transcription factor of Trichoderma harzianum is involved in 6-pentyl-2H- pyran-2 - One production and antifungal activity
    • Rubio MB, Hermosa R, Reino JL, Collado IG, Monte E (2009) Thctf1 transcription factor of Trichoderma harzianum is involved in 6-pentyl-2H- pyran-2 - one production and antifungal activity. Fungal Genet Biol 46:17-27.
    • (2009) Fungal Genet Biol , vol.46 , pp. 17-27
    • Rubio, M.B.1    Hermosa, R.2    Reino, J.L.3    Collado, I.G.4    Monte, E.5
  • 30
    • 84899436971 scopus 로고    scopus 로고
    • website. Available: Accessed 2013 November 15
    • JGI website. Available: http://genome.jgi.doe.gov. Accessed 2013 November 15.
  • 31
    • 0021222728 scopus 로고
    • Toxicological features of T-2 toxin and related trichothecenes
    • UenoY (1984) Toxicological features of T-2 toxin and related trichothecenes. Fundam Appl Toxicol 4: 124-132.
    • (1984) Fundam Appl Toxicol , vol.4 , pp. 124-132
    • Ueno, Y.1
  • 32
    • 0021985348 scopus 로고
    • The toxicology of mycotoxins
    • Ueno Y (1985) The toxicology of mycotoxins. CRS Crit Rev Toxicol 14: 99-132.
    • (1985) CRS Crit Rev Toxicol , vol.14 , pp. 99-132
    • Ueno, Y.1


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