A role for barley CRYPTOCHROME1 in light regulation of grain dormancy and germination

Plant Cell

Volumn 26, Issue 3, 2014, Pages 1094-1104

  Barrero, Jose M ^a   Downie, A Bruce ^b   Xu, Qian ^a   Gubler, Frank ^a  

^a CSIRO   (Australia)

^b UNIVERSITY OF KENTUCKY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CRYPTOCHROME; VEGETABLE PROTEIN;

GENE EXPRESSION REGULATION; GENETICS; GERMINATION; HORDEUM; LIGHT; PHYSIOLOGY;

CRYPTOCHROMES; GENE EXPRESSION REGULATION, PLANT; GERMINATION; HORDEUM; LIGHT; PLANT PROTEINS;

EID: 84899136448     PISSN: 10404651     EISSN: 1532298X     Source Type: Journal    
DOI: 10.1105/tpc.113.121830     Document Type: Article

References (59)

1. Adamska, I., Ohad, I., and Kloppstech, K. (1992). Synthesis of the early light-inducible protein is controlled by blue light and related to light stress. Proc. Natl. Acad. Sci. USA 89: 2610-2613.
2. Barrero, J.M., Jacobsen, J.V., Talbot, M.J., White, R.G., Swain, S. M., Garvin, D.F., and Gubler, F. (2012). Grain dormancy and light quality effects on germination in the model grass Brachypodium distachyon. New Phytol. 193: 376-386.
3. Barrero, J.M., Talbot, M.J., White, R.G., Jacobsen, J.V., and Gubler, F. (2009). Anatomical and transcriptomic studies of the coleorhiza reveal the importance of this tissue in regulating dormancy in barley. Plant Physiol. 150: 1006-1021.
4. Bartels, D., Hanke, C., Schneider, K., Michel, D., and Salamini, F. (1992). A desiccation-related Elip-like gene from the resurrection plant Craterostigma plantagineum is regulated by light and ABA. EMBO J. 11: 2771-2778.
5. Bouly, J.P., Schleicher, E., Dionisio-Sese, M., Vandenbussche, F., Van Der Straeten, D., Bakrim, N., Meier, S., Batschauer, A., Galland, P., Bittl, R., and Ahmad, M. (2007). Cryptochrome blue light photoreceptors are activated through interconversion of flavin redox states. J. Biol. Chem. 282: 9383-9391.
6. Briggs, W.R., and Christie, J.M. (2002). Phototropins 1 and 2: Versatile plant blue-light receptors. Trends Plant Sci. 7: 204-210.
7. Chang, S., Puryear, J., and Cairney, J. (1993). A simple and efficient method for isolating RNA from pine trees. Plant Mol. Biol. Rep. 11: 113-116.
8. Chaussat, R., and Zoppolo, J. (1983). Lumière et germination de l'orge. Bios. 14: 30-32.
9. Chaves, I., Pokorny, R., Byrdin, M., Hoang, N., Ritz, T., Brettel, K., Essen, L.O., van der Horst, G.T., Batschauer, A., and Ahmad, M. (2011). The cryptochromes: Blue light photoreceptors in plants and animals. Annu. Rev. Plant Biol. 62: 335-364.
10. Christie, J.M. (2007). Phototropin blue-light receptors. Annu. Rev. Plant Biol. 58: 21-45.
11. Dave, A., Hernández, L., He, Z., Andriotis, V.M.E., Vaistij, F.E., Larson, T.R., and Graham, I.A. (2011). 12-Oxo-phytodienoic acid accumulation during seed development represses seed germination in Arabidopsis. Plant Cell 23: 583-599.
12. Fittinghoff, K., Laubinger, S., Nixdorf, M., Fackendahl, P., Baumgardt, R.L., Batschauer, A., and Hoecker, U. (2006). Functional and expression analysis of Arabidopsis SPA genes during seedling photomorphogenesis and adult growth. Plant J. 47: 577-590.
13. Folta, K.M., and Spalding, E.P. (2001). Unexpected roles for cryptochrome 2 and phototropin revealed by high-resolution analysis of blue lightmediated hypocotyl growth inhibition. Plant J. 26: 471-478.
14. Goggin, D.E., and Steadman, K.J. (2012). Blue and green are frequently seen: Responses of seeds to short-and mid-wavelength light. Seed Sci. Res. 22: 27-35.
15. Goggin, D.E., Steadman, K.J., and Powles, S.B. (2008). Green and blue light photoreceptors are involved in maintenance of dormancy in imbibed annual ryegrass (Lolium rigidum) seeds. New Phytol. 180: 81-89.
16. Gubler, F., Hughes, T., Waterhouse, P., and Jacobsen, J. (2008). Regulation of dormancy in barley by blue light and after-ripening: effects on abscisic acid and gibberellin metabolism. Plant Physiol. 147: 886-896.
17. Gubler, F., Millar, A.A., and Jacobsen, J.V. (2005). Dormancy release, ABA and pre-harvest sprouting. Curr. Opin. Plant Biol. 8: 183-187.
18. Grimm, B., and Kloppstech, K. (1987). The early light-inducible proteins of barley. Characterization of two families of 2-h-specific nuclear-coded chloroplast proteins. Eur. J. Biochem. 167: 493-499.
19. Guo, H., Yang, H., Mockler, T.C., and Lin, C. (1998). Regulation of flowering time by Arabidopsis photoreceptors. Science 279: 1360-1363.
20. Harari-Steinberg, O., Ohad, I., and Chamovitz, D.A. (2001). Dissection of the light signal transduction pathways regulating the two early light-induced protein genes in Arabidopsis. Plant Physiol. 127: 986-997.
21. Hardtke, C.S., Okamoto, H., Stoop-Myer, C., and Deng, X.W. (2002). Biochemical evidence for ubiquitin ligase activity of the Arabidopsis COP1 interacting protein 8 (CIP8). Plant J. 30: 385-394.
22. Heschel, M.S., Butler, C.M., Barua, D., Chiang, G.C.K., Wheeler, A., Sharrock, R.A., Whitelam, G.C., and Donohue, K. (2008). New roles of phytochromes during seed germination. Int. J. Plant Sci. 169: 531-540.
23. Hoang, H.H., Sechet, J., Bailly, C., Leymarie, J., and Corbineau, F. (November 21, 2013). Inhibition of germination of dormant barley (Hordeum vulgare L.) grains by blue light as related to oxygen and hormonal regulation. Plant Cell Environ. http://dx.doi.org/10.1111/ pce.12239.
24. Holm, M., Ma, L.G., Qu, L.J., and Deng, X.W. (2002). Two interacting bZIP proteins are direct targets of COP1-mediated control of lightdependent gene expression in Arabidopsis. Genes Dev. 16: 1247-1259.
25. Imaizumi, T., and Kay, S.A. (2006). Photoperiodic control of flowering: Not only by coincidence. Trends Plant Sci. 11: 550-558.
26. Jacobsen, J.V., Barrero, J.M., Hughes, T., Julkowska, M., Taylor, J.M., Xu, Q., and Gubler, F. (2013). Roles for blue light, jasmonate and nitric oxide in the regulation of dormancy and germination in wheat grain (Triticum aestivum L.). Planta 238: 121-138.
27. Jacobsen, J.V., Pearce, D.W., Poole, A.T., Pharis, R.P., and Mander, L.N. (2002). Abscisic acid, phaseic acid and gibberellin contents associated with dormancy and germination in barley. Physiol. Plant. 115: 428-441.
28. Jacobsen, J.V., Venables, I., Wang, M.B., Matthews, P., Ayliffe, M., and Gubler, F. (2006). Barley (Hordeum vulgare L.). In Agrobacterium Protocols, 2nd ed, Vol. 1, K. Wang, ed (Totowa, NJ: Humana Press), pp. 171-183.
29. Jain, M., Sharma, P., Tyagi, S.B., Tyagi, A.K., and Khurana, J.P. (2007). Light regulation and differential tissue-specific expression of phototropin homologues from rice (Oryza sativa ssp. indica). Plant Sci. 172: 164-171.
30. Kanegae, H., Tahir, M., Savazzini, F., Yamamoto, K., Yano, M., Sasaki, T., Kanegae, T., Wada, M., and Takano, M. (2000). Rice NPH1 homologues, OsNPH1a and OsNPH1b, are differently photoregulated. Plant Cell Physiol. 41: 415-423.
31. Kennis, J.T., van Stokkum, I.H., Crosson, S., Gauden, M., Moffat, K., and van Grondelle, R. (2004). The LOV2 domain of phototropin: A reversible photochromic switch. J. Am. Chem. Soc. 126: 4512-4513.
32. Li, Q.-H., and Yang, H.-Q. (2007). Cryptochrome signaling in plants. Photochem. Photobiol. 83: 94-101.
33. Marumo, S., Katayama, M., Komori, E., Ozaki, Y., Natsume, M., and Kondo, S. (1982). Microbial production of abscisic acid by Botrytis cinerea. Agric. Biol. Chem. 46: 1967-1968.
34. Más, P., and Yanovsky, M.J. (2009). Time for circadian rhythms: Plants get synchronized. Curr. Opin. Plant Biol. 12: 574-579.
35. Matsumoto, T., et al. (2011). Comprehensive sequence analysis of 24,783 barley full-length cDNAs derived from 12 clone libraries. Plant Physiol. 156: 20-28.
36. Meyer, R.S., and Purugganan, M.D. (2013). Evolution of crop species: Genetics of domestication and diversification. Nat. Rev. Genet. 14: 840-852.
37. Millar, A.A., Jacobsen, J.V., Ross, J.J., Helliwell, C.A., Poole, A.T., Scofield, G., Reid, J.B., and Gubler, F. (2006). Seed dormancy and ABA metabolism in Arabidopsis and barley: The role of ABA 89-hydroxylase. Plant J. 45: 942-954.
38. Mockler, T., Yang, H., Yu, X., Parikh, D., Cheng, Y.C., Dolan, S., and Lin, C. (2003). Regulation of photoperiodic flowering by Arabidopsis photoreceptors. Proc. Natl. Acad. Sci. USA 100: 2140-2145.
39. Oh, E., Yamaguchi, S., Hu, J., Yusuke, J., Jung, B., Paik, I., Lee, H.S., Sun, T.P., Kamiya, Y., and Choi, G. (2007). PIL5, a phytochrome-interacting bHLH protein, regulates gibberellin responsiveness by binding directly to the GAI and RGA promoters in Arabidopsis seeds. Plant Cell 19: 1192-1208.
40. Perrotta, G., Yahoubyan, G., Nebuloso, E., Renzi, L., and Giuliano, G. (2001). Tomato and barley contain duplicated copies of cryptochrome 1. Plant Cell Environ. 24: 991-997.
41. Poppe, C., Sweere, U., Drumm-Herrel, H., and Schäfer, E. (1998). The blue light receptor cryptochrome 1 can act independently of phytochrome A and B in Arabidopsis thaliana. Plant J. 16: 465-471.
42. Raghavan, V., and Kamalay, J.C. (1993). Expression of two cloned mRNA sequences during development and germination of spores of the sensitive, Onoclea sensibilis L. Planta 189: 1-9.
43. Rizza, A., Boccaccini, A., Lopez-Vidriero, I., Costantino, P., and Vittorioso, P. (2011). Inactivation of the ELIP1 and ELIP2 genes affects Arabidopsis seed germination. New Phytol. 190: 896-905.
44. Sellaro, R., Crepy, M., Trupkin, S.A., Karayekov, E., Buchovsky, A. S., Rossi, C., and Casal, J.J. (2010). Cryptochrome as a sensor of the blue/green ratio of natural radiation in Arabidopsis. Plant Physiol. 154: 401-409.
45. Sellaro, R., Hoecker, U., Yanovsky, M., Chory, J., and Casal, J.J. (2009). Synergism of red and blue light in the control of Arabidopsis gene expression and development. Curr. Biol. 19: 1216-1220.
46. Seo, M., et al. (2006). Regulation of hormone metabolism in Arabidopsis seeds: Phytochrome regulation of abscisic acid metabolism and abscisic acid regulation of gibberellin metabolism. Plant J. 48: 354-366.
47. Seo, M., Nambara, E., Choi, G., and Yamaguchi, S. (2009). Interaction of light and hormone signals in germinating seeds. Plant Mol. Biol. 69: 463-472.
48. Sugai, M., and Furuya, M. (1985). Action spectrum in ultraviolet and blue light region for the inhibition of red-light-induced spore germination in Adiantum capillus-veneris L. Plant Cell Physiol. 26: 953-956.
49. Simpson, G.M. (1990). Seed Dormancy in Grasses. (Cambridge, New York: Cambridge University Press).
50. Szucs, P., Karsai, I., von Zitzewitz, J., Mészáros, K., Cooper, L.L., Gu, Y.Q., Chen, T.H., Hayes, P.M., and Skinner, J.S. (2006). Positional relationships between photoperiod response QTL and photoreceptor and vernalization genes in barley. Theor. Appl. Genet. 112: 1277-1285.
51. Trevaskis, B., Hemming, M.N., Peacock, W.J., and Dennis, E.S. (2006). HvVRN2 responds to daylength, whereas HvVRN1 is regulated by vernalization and developmental status. Plant Physiol. 140: 1397-1405.
52. Wang, M., Li, Z., Matthews, P.R., Upadhyaya, N.M., Waterhouse, P.M., Wang, M.B., and Li, Z.Y. (1998). Improved vectors for Agrobacterium-mediated transformation of monocot plants. Acta Hortic. 461: 401-407.
53. Wang, Y., and Folta, K.M. (2013). Contributions of green light to plant growth and development. Am. J. Bot. 100: 70-78.
54. Xu, P., Xiang, Y., Zhu, H., Xu, H., Zhang, Z., Zhang, C., Zhang, L., and Ma, Z. (2009). Wheat cryptochromes: Subcellular localization and involvement in photomorphogenesis and osmotic stress responses. Plant Physiol. 149: 760-774.
55. Xu, P., Zhu, H.L., Xu, H.B., Zhang, Z.Z., Zhang, C.Q., Zhang, L.X., and Ma, Z.Q. (2010). Composition and phylogenetic analysis of wheat cryptochrome gene family. Mol. Biol. Rep. 37: 825-832.
56. Yu, X., Liu, H., Klejnot, J., and Lin, C. (2010). The cryptochrome blue light receptors. The Arabidopsis Book 8: e0135, doi/10.1199/tab.0135.
57. Zeng, Q., Chen, X.B., and Wood, A.J. (2002). Two early lightinducible protein (ELIP) cDNAs from the resurrection plant Tortula ruralis are differentially expressed in response to desiccation, rehydration, salinity, and high light. J. Exp. Bot. 53: 1197-1205.
58. Zhang, T., Maruhnich, S.A., and Folta, K.M. (2011). Green light induces shade avoidance symptoms. Plant Physiol. 157: 1528-1536.
59. Zhang, Y.-C., Gong, S.-F., Li, Q.-H., Sang, Y., and Yang, H.Q. (2006). Functional and signaling mechanism analysis of rice CRYPTOCHROME 1. Plant J. 46: 971-983.