Inactivation of the ELIP1 and ELIP2 genes affects Arabidopsis seed germination

New Phytologist

Volumn 190, Issue 4, 2011, Pages 896-905

  Rizza, Annalisa ^a   Boccaccini, Alessandra ^a   Lopez Vidriero, Irene ^b   Costantino, Paolo ^a   Vittorioso, Paola ^a  

^a SAPIENZA UNIVERSITY OF ROME   (Italy)

^b CENTRO NACIONAL DE BIOTECNOLOGÍA   (Spain)

Author keywords

Abiotic stress; Arabidopsis; DAG1; ELIP; Seed germination

Indexed keywords

ARABIDOPSIS PROTEIN; DAG1 PROTEIN, ARABIDOPSIS; DNA BINDING PROTEIN; ELIP PROTEIN, ARABIDOPSIS; ELIP2 PROTEIN, ARABIDOPSIS; TRANSCRIPTION FACTOR;

BIOLOGICAL DEVELOPMENT; DICOTYLEDON; ENVIRONMENTAL STRESS; GENE EXPRESSION; GERMINATION; LIGHT EFFECT; MUTATION; PROTEIN;

ARABIDOPSIS; ARTICLE; GENE EXPRESSION REGULATION; GENE SILENCING; GENETICS; GERMINATION; GROWTH, DEVELOPMENT AND AGING; LIGHT; METABOLISM; MICROARRAY ANALYSIS; MUTATION; PHYSIOLOGICAL STRESS; PLANT SEED; RADIATION EXPOSURE;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; DNA-BINDING PROTEINS; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENE EXPRESSION REGULATION, PLANT; GENE SILENCING; GERMINATION; LIGHT; MICROARRAY ANALYSIS; MUTATION; SEEDS; STRESS, PHYSIOLOGICAL; TRANSCRIPTION FACTORS;

ARABIDOPSIS;

EID: 79955751728     PISSN: 0028646X     EISSN: 14698137     Source Type: Journal    
DOI: 10.1111/j.1469-8137.2010.03637.x     Document Type: Article

References (53)

1. Adamska I. 2001. The Elip family of stress proteins in the thylakoid membranes of Pro- and Eukaryota. In: Aro E-M, Andersson B, eds. Regulation of photosynthesis. Dordrecht, the Netherlands: Kluwer Academic Publishers, 11 487-505.
2. Adamska I, Kloppstech K. 1994. Low temperature increases the abundance of early light-inducible transcript under light stress conditions. Journal Biological Chemistry 269: 30221-30226.
3. Alamillo JM, Bartels D. 2001. Effects of desiccation on photosynthesis pigments and the ELIP-like dsp 22 protein complexes in the resurrection plant Craterostigma plantagineum. Plant Science 160: 1161-1170.
4. Auge GA, Perelman S, Crocco CD, Sánchez RA, Botto JF. 2009. Gene expression analysis of light-modulated germination in tomato seeds. New Phytologist 183: 301-314.
5. Bartels D, Hanke C, Schneider K, Michel D, Salamini F. 1992. A desiccation-related Elip-like gene from the resurrection plant Craterostigma plantagineum is regulated by light and ABA. EMBO Journal 11: 2771-2778.
6. Benjamini Y, Hochberg Y. 1995. Controlling the false discovery rate: a practical and powerful approach to multiple testing. Journal of the Royal Statistical Society. Series B 57: 289-300.
7. Bewley JD. 1997. Seed germination and dormancy. Plant Cell 9: 1055-1066.
8. Bowler C, Benvenuto G, Laflamme P, Molino D, Probst A, Tariq M, Paszkowski J. 2004. Chromatin techniques for plant cells. Plant Journal 39: 776-789.
9. Casazza A, Rossini S, Rosso MG, Soave C. 2005. Mutational and expression analysis of ELIP1 and ELIP2 in Arabidopsis thaliana. Plant Molecular Biology 58: 41-51.
10. Castillon A, Shen H, Huq E. 2007. Phytochrome interacting factors: central players in phytochrome-mediated light signaling networks. Trends in Plant Science 12: 514-521.
11. Eulgem T, Rushton PJ, Robatzek S, Somssich IE. 2000. The WRKY superfamily of plant transcription factors. Trends in Plant Science 2000: 199-206.
12. Gabriele S, Rizza A, Martone J, Circelli P, Costantino P, Vittorioso P. 2010. The Dof protein DAG1 mediates PIL5 activity on seed germination by negatively regulating GA biosynthetic gene AtGA3ox1. Plant Journal 61: 312-323.
13. Grimm B, Kloppstech K. 1987. The early light-inducible proteins of barley. European Journal Biochemistry 167: 493-499.
14. Grimm B, Kruse E, Kloppstech K. 1989. Transiently expressed early light-inducible thylakoid proteins share transmembrane domains with light-harvesting chlorophyll binding proteins. Plant Molecular Biology 13: 583-593.
15. Gualberti G, Papi M, Bellucci L, Ricci I, Bouchez D, Camilleri C, Costantino P, Vittorioso P. 2002. Mutations in the Dof zinc finger genes DAG1 and DAG2 influence with opposite effects the germination of Arabidopsis seeds. Plant Cell 14: 1253-1263.
16. Harari-Steinberg O, Ohad I, Chamovitz DA. 2001. Dissection of the light signal transduction pathways regulating the two early light-induced protein genes in Arabidopsis. Plant Physiology 127: 986-997.
17. Heddad M, Noren H, Reiser V, Dunaeva M, Andersson B, Adamska I. 2006. Differential expression and localization of early light-induced proteins in Arabidopsis. Plant Physiology 142: 75-87.
18. Heschel MS, Selby J, Butler C, Whitelam GC, Sharrock RA, Donohue K. 2007. A new role for phytochromes in temperature-dependent germination. New Phytologist 174: 735-741.
19. Hutin C, Nussaume L, Moise N, Moya I, Kloppstech K, Havaux M. 2003. Early light-induced proteins protect Arabidopsis from photooxidative stress. Proceedings of the National Academy of Sciences, USA 100: 4921-4926.
20. Imaizumi T, Schultz TF, Harmon FG, Ho LA, Kay SA. 2005. FKF1F-box protein mediates cyclic degradation of a repressor of CONSTANS in Arabidopsis. Science 309: 293-297.
21. Irizarry RA, Hobbs B, Collin F, Beazer-Barclay YD, Antonellis KJ, Scherf U, Speed TP. 2003. Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 4: 249-264.
22. Jiang W, Yu D. 2009. Arabidopsis WRKY2 transcription factor mediates seed germination and postgermination arrest of development by abscisic acid. BMC Plant Biology 9: 96.
23. Lijavetzky D, Carbonero P, Vicente-Carbajosa J. 2003. Genome-wide comparative phylogenetic analysis of the rice and Arabidopsis Dof gene families. BMC Evolutionary Biology 23: 3. 17
24. Menkens AE, Schindler U, Cashmore AR. 1995. The G-box: a ubiquitous regulatory DNA element in plants bound by the GBF family of bZIP proteins. Trends in Biochemical Sciences 20: 506-510.
25. Meyer G, Kloppstech K. 1984. A rapidly light-induced chloroplast protein with a high turnover coded for by a pea nuclear DNA. European Journal Biochemistry 138: 201-207.
26. Montané MH, Dreyer S, Triantaphylidès C, Kloppstech K. 1997. Early light-inducible proteins during long-term acclimation of barley to photooxidative stress caused by light and cold: high level of accumulation by posttranscriptional regulation. Planta 202: 293-302.
27. Montané MH, Kloppstech K. 2000. The family of light-harvesting-related proteins (LHCs, ELIPs, HLIPs): was the harvesting of light their primary function? Gene 250: 1-8.
28. Moon J, Zhu L, Shen H, Huq E. 2008. PIF1 directly and indirectly regulates chlorophyll biosynthesis to optimize the greening process in Arabidopsis. Proceedings of the National Academy of Sciences, USA 105: 9433-9438.
29. Moreno-Risueno MA, Martínez M, Vicente-Carbajosa J, Carbonero P. 2007. The family of DOF transcription factors: from green unicellular algae to vascular plants. Molecular Genetics and Genomics 277: 379-390.
30. Oh E, Kim J, Park E, Kim JI, Kang C, Choi G. 2004. PIL5, a phytochrome-interacting basic helix-loop-helix protein, is a key negative regulator of seed germination in Arabidopsis thaliana. Plant Cell 16: 3045-3058.
31. Oh E, Yamaguchi S, Hu J, Yusuke J, Jung B, Paik I, Lee HS, Sun TP, Kamiya Y, Choi G. 2007. PIL5, a phytochrome-interacting bHLH protein, regulates gibberellin responsiveness by binding directly to the GAI and RGA promoters in Arabidopsis seeds. Plant Cell 19: 1192-1208.
32. Otto B, Ohad I, Kloppstech K. 1992. Temperature treatments of dark-grown pea seedlings cause an accelerated greening in the light at different levels of gene expression. Plant Molecular Biology 18: 887-896.
33. Papi M, Sabatini S, Altamura MM, Henning L, Schafer E, Costantino P, Vittorioso P. 2002. Inactivation of the phloem-specific Dof zinc finger gene DAG1 affects response to light and integrity of the testa of Arabidopsis seeds. Plant Physiology 128: 411-417.
34. Papi M, Sabatini S, Bouchez D, Camilleri C, Costantino P, Vittorioso P. 2000. Identification and disruption of an Arabidopsis zinc finger gene controlling seed germination. Genes Development 14: 28-33.
35. Park HD, Ok Lim P, Sik Kim J, Shik Cho D, Hyun Hong S, Gil Nam H. 2003. The Arabidopsis COG1 gene encodes a Dof domain transcription factor and negatively regulates phytochrome signaling. Plant Journal 34: 161-171.
36. Penfield S, Josse EM, Kannangara R, Gilday AD, Halliday KJ, Graham IA. 2005. Cold and light control seed germination through the bHLH transcription factor SPATULA. Current Biology 15: 1998-2006.
37. Reiner A, Yekutieli D, Benjamini Y. 2003. Identifying differentially expressed genes using false discovery rate controlling procedures. Bioinformatics 19: 368-375.
38. Rossini S, Casazza AP, Engelmann EC, Havaux M, Jennings RC, Soave C. 2006. Suppression of both ELIP1 and ELIP2 in Arabidopsis does not affect tolerance to photoinhibition and photooxidative stress. Plant Physiology 141: 1264-1273.
39. Ruppel NJ, Hangarter RP. 2007. Mutations in a plastid-localized elongation factor G alter early stages of plastid development in Arabidopsis thaliana. BMC Plant Biology 13: 7.
40. Saleh A, Alvarez-Venegas R, Avramova Z. 2008. An efficient chromatin immunoprecipitation (ChIP) protocol for studying histone modifications in Arabidopsis plant. Nature Protocols 3: 1018-1025.
41. Schichjo C, Katada K, Tanaka O, Hashimoto T. 2001. Phytochrome A-mediated inhibition of seed germination in tomato. Planta 213: 764-769.
42. Shinomura T, Nagatani A, Chory J, Furuya M. 1994. The induction of seed germination in Arabidopsis thaliana is regulated principally by phytochrome B and secondarily by phytochrome A. Plant Physiology 104: 363-371.
43. Smyth DR, Bowman JL, Meyerowitz EM. 1990. Early flower development in Arabidopsis. Plant Cell 2: 755-767.
44. Taylor NL, Tan YF, Jacoby RP, Millar AH. 2009. Abiotic environmental stress induced changes in the Arabidopsis thaliana chloroplast, mitochondria and peroxisome proteomes. Journal of Proteomics 72: 367-378.
45. Toufighi K, Brady SM, Austin R, Ly E, Provart NJ. 2005. The botany array resource: e-northerns, expression angling and promoter analyses. Plant Journal 43: 153-163.
46. Tzvetkova-Chevolleau T, Franck F, Alawady AE, Dall'Osto L, Carrière F, Bassi R, Grimm B, Nussaume L, Havaux M. 2007. The light stress-induced protein ELIP2 is a regulator of chlorophyll synthesis. Plant Journal 50: 795-809.
47. Ward JM, Cufr CA, Denzel MA, Neff MM. 2005. The Dof transcription factor OBP3 modulates phytochrome and cryptochrome signaling in Arabidopsis. Plant Cell 17: 475-485.
48. Waters MT, Langdale JA. 2009. The making of a chloroplast. EMBO Journal 28: 2861-2873.
49. Wettenhall JM, Simpson KM, Satterley K, Smith GK. 2006. AffylmGUI: a graphical user interface for linear modeling of single channel microarray data. Bioinformatics 22: 897-899.
50. Yanagisawa S. 2002. The DOF family of plant transcription factors. Trends Plant Science 7: 555-560.
51. Yanagisawa S, Sheen J. 1998. Involvement of maize Dof zinc finger proteins in tissue-specific and light-regulated gene expression. Plant Cell 10: 75-99.
52. Zeng O, Chen XB, Wood AJ. 2002. Two early light-inducible protein (ELIP) cDNAs from the resurrection plant Tortula ruralis are differentially expressed in response to dessication, rehydration, salinity and high light. Journal Experimental Botany 53: 1197-1205.
53. Zou X, Neuman D, Shen QJ. 2008. Interactions of two transcriptional repressors and two transcriptional activators in modulating gibberellin signaling in aleurone cells. Plant Physiology 148: 176-186.