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Volumn 7, Issue 1, 2014, Pages

Exploring the molecular causes of hepatitis B virus vaccination response: An approach with epigenomic and transcriptomic data

Author keywords

Hepatitis B virus; Methylation; Omics; Vaccine

Indexed keywords

MAJOR HISTOCOMPATIBILITY ANTIGEN CLASS 1; RECOMBINANT HEPATITIS B VACCINE; RING FINGER PROTEIN; RING FINGER PROTEIN 39; UNCLASSIFIED DRUG;

EID: 84899089734     PISSN: None     EISSN: 17558794     Source Type: Journal    
DOI: 10.1186/1755-8794-7-12     Document Type: Article
Times cited : (22)

References (34)
  • 1
    • 43749098985 scopus 로고    scopus 로고
    • DNA methylation landscapes: Provocative insights from epigenomics
    • 18463664
    • DNA methylation landscapes: provocative insights from epigenomics. Suzuki MM, Bird A, Nat Rev Genet 2008 9 465 476 18463664
    • (2008) Nat Rev Genet , vol.9 , pp. 465-476
    • Suzuki, M.M.1    Bird, A.2
  • 2
    • 85027954125 scopus 로고    scopus 로고
    • DNA methylation profiling in the clinic: Applications and challenges
    • 10.1038/nrg3270 22945394
    • DNA methylation profiling in the clinic: applications and challenges. Heyn H, Esteller M, Nat Rev Genet 2012 13 679 692 10.1038/nrg3270 22945394
    • (2012) Nat Rev Genet , vol.13 , pp. 679-692
    • Heyn, H.1    Esteller, M.2
  • 6
    • 84871688621 scopus 로고    scopus 로고
    • Analysing and interpreting DNA methylation data
    • 22986265
    • Analysing and interpreting DNA methylation data. Bock C, Nat Rev Genet 2012 13 705 719 22986265
    • (2012) Nat Rev Genet , vol.13 , pp. 705-719
    • Bock, C.1
  • 7
    • 0036898577 scopus 로고    scopus 로고
    • Microarray data normalization and transformation
    • 10.1038/ng1032 12454644
    • Microarray data normalization and transformation. Quackenbush J, Nat Genet 2002 32 496 501 10.1038/ng1032 12454644
    • (2002) Nat Genet , vol.32 , pp. 496-501
    • Quackenbush, J.1
  • 8
    • 0035942271 scopus 로고    scopus 로고
    • Significance analysis of microarrays applied to the ionizing radiation response
    • 10.1073/pnas.091062498 11309499
    • Significance analysis of microarrays applied to the ionizing radiation response. Tusher VG, Tibshirani R, Chu G, Proc Natl Acad Sci 2001 98 5116 5121 10.1073/pnas.091062498 11309499
    • (2001) Proc Natl Acad Sci , vol.98 , pp. 5116-5121
    • Tusher, V.G.1    Tibshirani, R.2    Chu, G.3
  • 9
    • 4544341015 scopus 로고    scopus 로고
    • Linear models and empirical bayes methods for assessing differential expression in microarray experiments
    • Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Smyth G, Stat Appl Genet Mol Biol 2004 3 1544 6115
    • (2004) Stat Appl Genet Mol Biol , vol.3 , pp. 1544-6115
    • Smyth, G.1
  • 10
    • 84878549157 scopus 로고    scopus 로고
    • Genetic effects have a dominant role on poor responses to infant vaccination to hepatitis B virus
    • 10.1038/jhg.2013.18 23486340
    • Genetic effects have a dominant role on poor responses to infant vaccination to hepatitis B virus. Yan K, Cai W, Cao F, Sun H, Chen S, Xu R, Wei X, Shi X, Yan W, J Hum Genet 2013 58 293 297 10.1038/jhg.2013.18 23486340
    • (2013) J Hum Genet , vol.58 , pp. 293-297
    • Yan, K.1    Cai, W.2    Cao, F.3    Sun, H.4    Chen, S.5    Xu, R.6    Wei, X.7    Shi, X.8    Yan, W.9
  • 11
    • 84899114723 scopus 로고    scopus 로고
    • WHO | hepatitis B
    • WHO | hepatitis B. [ http://www.who.int/csr/disease/hepatitis/ whocdscsrlyo20022/en/index1.html ]
  • 13
    • 0030305457 scopus 로고    scopus 로고
    • R: A language for data analysis and graphics
    • R: a language for data analysis and graphics. Ihaka R, Gentleman R, J Comput Graph Stat 1996 5 299 314
    • (1996) J Comput Graph Stat , vol.5 , pp. 299-314
    • Ihaka, R.1    Gentleman, R.2
  • 14
    • 84862266444 scopus 로고    scopus 로고
    • Complete pipeline for Infinium®Human Methylation 450 K BeadChip data processing using subset quantile normalization for accurate DNA methylation estimation
    • 10.2217/epi.12.21 22690668
    • Complete pipeline for Infinium®Human Methylation 450 K BeadChip data processing using subset quantile normalization for accurate DNA methylation estimation. Touleimat N, Tost J, Epigenomics 2012 4 325 341 10.2217/epi.12.21 22690668
    • (2012) Epigenomics , vol.4 , pp. 325-341
    • Touleimat, N.1    Tost, J.2
  • 15
    • 0001884644 scopus 로고
    • Individual comparisons by ranking methods
    • 10.2307/3001968
    • Individual comparisons by ranking methods. Wilcoxon F, Biometrics 1945 1 80 83 10.2307/3001968
    • (1945) Biometrics , vol.1 , pp. 80-83
    • Wilcoxon, F.1
  • 16
    • 0002386913 scopus 로고
    • On the interpretation of χ2 from contingency tables, and the calculation of P
    • 10.2307/2340521
    • On the interpretation of χ2 from contingency tables, and the calculation of P. Fisher RA, J R Stat Soc 1922 85 87 10.2307/2340521
    • (1922) J R Stat Soc , vol.85 , pp. 87
    • Fisher, R.A.1
  • 18
    • 0036081355 scopus 로고    scopus 로고
    • Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
    • 10.1093/nar/30.1.207 11752295
    • Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Edgar R, Domrachev M, Lash AE, Nucleic Acids Res 2002 30 207 210 10.1093/nar/30.1.207 11752295
    • (2002) Nucleic Acids Res , vol.30 , pp. 207-210
    • Edgar, R.1    Domrachev, M.2    Lash, A.E.3
  • 19
    • 27644507359 scopus 로고    scopus 로고
    • Genomic analysis of anti-hepatitis B virus (HBV) activity by small interfering RNA and lamivudine in stable HBV-producing cells
    • 10.1128/JVI.79.22.14392-14403.2005 16254373
    • Genomic analysis of anti-hepatitis B virus (HBV) activity by small interfering RNA and lamivudine in stable HBV-producing cells. Guo Y, Guo H, Zhang L, Xie H, Zhao X, Wang F, Li Z, Wang Y, Ma S, Tao J, Wang W, Zhou Y, Yang W, Cheng J, J Virol 2005 79 14392 14403 10.1128/JVI.79.22.14392-14403.2005 16254373
    • (2005) J Virol , vol.79 , pp. 14392-14403
    • Guo, Y.1    Guo, H.2    Zhang, L.3    Xie, H.4    Zhao, X.5    Wang, F.6    Li, Z.7    Wang, Y.8    Ma, S.9    Tao, J.10    Wang, W.11    Zhou, Y.12    Yang, W.13    Cheng, J.14
  • 23
    • 11844278458 scopus 로고    scopus 로고
    • Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are MicroRNA targets
    • 10.1016/j.cell.2004.12.035 15652477
    • Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are MicroRNA targets. Lewis BP, Burge CB, Bartel DP, Cell 2005 120 15 20 10.1016/j.cell.2004.12.035 15652477
    • (2005) Cell , vol.120 , pp. 15-20
    • Lewis, B.P.1    Burge, C.B.2    Bartel, D.P.3
  • 24
    • 38549124383 scopus 로고    scopus 로고
    • The microRNA.org resource: Targets and expression
    • 10.1093/nar/gkm995 18158296
    • The microRNA.org resource: targets and expression. Betel D, Wilson M, Gabow A, Marks DS, Sander C, Nucleic Acids Res 2007 36 Database 149 D153 10.1093/nar/gkm995 18158296
    • (2007) Nucleic Acids Res , vol.36 , Issue.DATABASE
    • Betel, D.1    Wilson, M.2    Gabow, A.3    Marks, D.S.4    Sander, C.5
  • 26
    • 84871050696 scopus 로고    scopus 로고
    • DNA methylome signature in rheumatoid arthritis
    • 10.1136/annrheumdis-2012-201526 22736089
    • DNA methylome signature in rheumatoid arthritis. Nakano K, Whitaker JW, Boyle DL, Wang W, Firestein GS, Ann Rheum Dis 2013 72 110 117 10.1136/annrheumdis-2012-201526 22736089
    • (2013) Ann Rheum Dis , vol.72 , pp. 110-117
    • Nakano, K.1    Whitaker, J.W.2    Boyle, D.L.3    Wang, W.4    Firestein, G.S.5
  • 27
    • 84899090322 scopus 로고    scopus 로고
    • Bioconductor-methylumi. [ http://www.bioconductor.org/packages/2.10/bioc/ html/methylumi.html ]
    • Bioconductor - Methylumi
  • 28
    • 78649475003 scopus 로고    scopus 로고
    • Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis
    • 10.1186/1471-2105-11-587
    • Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis. Du P, Zhang X, Huang C-C, Jafari N, Kibbe W, Hou L, Lin S, BMC Bioinforma 2010 11 587 10.1186/1471-2105-11-587
    • (2010) BMC Bioinforma , vol.11 , pp. 587
    • Du, P.1    Zhang, X.2    Huang, C.-C.3    Jafari, N.4    Kibbe, W.5    Hou, L.6    Lin, S.7
  • 32
    • 76149098862 scopus 로고    scopus 로고
    • A2A adenosine receptor overexpression and functionality, as well as TNF-α levels, correlate with motor symptoms in Parkinson's disease
    • 10.1096/fj.09-141044 19776336
    • A2A adenosine receptor overexpression and functionality, as well as TNF-α levels, correlate with motor symptoms in Parkinson's disease. Varani K, Vincenzi F, Tosi A, Gessi S, Casetta I, Granieri G, Fazio P, Leung E, MacLennan S, Granieri E, Borea PA, FASEB J 2010 24 587 598 10.1096/fj.09-141044 19776336
    • (2010) FASEB J , vol.24 , pp. 587-598
    • Varani, K.1    Vincenzi, F.2    Tosi, A.3    Gessi, S.4    Casetta, I.5    Granieri, G.6    Fazio, P.7    Leung, E.8    Maclennan, S.9    Granieri, E.10    Borea, P.A.11
  • 34
    • 61449446524 scopus 로고    scopus 로고
    • Heparin-degrading sulfatases in hepatocellular carcinoma: Potential roles in pathogenesis and identification of therapeutic targets
    • 10.2217/14796694.4.6.803
    • Heparin-degrading sulfatases in hepatocellular carcinoma: potential roles in pathogenesis and identification of therapeutic targets. Lai J-P, Thompson JR, Sandhu DS, Roberts LR, Future Oncol Lond Engl 2008 4 803 814 10.2217/14796694.4.6.803
    • (2008) Future Oncol Lond Engl , vol.4 , pp. 803-814
    • Lai, J.-P.1    Thompson, J.R.2    Sandhu, D.S.3    Roberts, L.R.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.