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Volumn 60, Issue 1, 2014, Pages 22-26

Evaluation of the Abbott RealTime HCV genotype II RUO (GT II) assay with reference to 5'UTR, core and NS5B sequencing

Author keywords

DNA sequencing; Genotyping; Hepatitis C virus; Real time PCR

Indexed keywords

NONSTRUCTURAL PROTEIN 5B; 5' UNTRANSLATED REGION; NS-5 PROTEIN, HEPATITIS C VIRUS; VIRUS PROTEIN;

EID: 84899075021     PISSN: 13866532     EISSN: 18735967     Source Type: Journal    
DOI: 10.1016/j.jcv.2014.02.006     Document Type: Article
Times cited : (25)

References (35)
  • 2
    • 80053339008 scopus 로고    scopus 로고
    • An update on treatment of genotype 1 chronic hepatitis C virus infection: 2011 practice guideline by the American association for the study of liver diseases
    • Ghany M.G., Nelson D.R., Strader D.B., Thomas D.L., Seeff L.B. An update on treatment of genotype 1 chronic hepatitis C virus infection: 2011 practice guideline by the American association for the study of liver diseases. Hepatology 2011, 54:1433-1444.
    • (2011) Hepatology , vol.54 , pp. 1433-1444
    • Ghany, M.G.1    Nelson, D.R.2    Strader, D.B.3    Thomas, D.L.4    Seeff, L.B.5
  • 3
    • 84870040222 scopus 로고    scopus 로고
    • Hepatitis C virus viral assays in the direct-acting antiviral era
    • Vierling J.M. Hepatitis C virus viral assays in the direct-acting antiviral era. Clin Liver Dis 2013, 17:27-45.
    • (2013) Clin Liver Dis , vol.17 , pp. 27-45
    • Vierling, J.M.1
  • 8
    • 0028218513 scopus 로고
    • Identification of genotypes of hepatitis C virus by sequence comparisons in the core, E1 and NS-5 regions
    • Simmonds P., Smith D.B., McOmish F., Yap P.L., Kolberg J., Urdea M.S., et al. Identification of genotypes of hepatitis C virus by sequence comparisons in the core, E1 and NS-5 regions. J Gen Virol 1994, 75:1053-1061.
    • (1994) J Gen Virol , vol.75 , pp. 1053-1061
    • Simmonds, P.1    Smith, D.B.2    McOmish, F.3    Yap, P.L.4    Kolberg, J.5    Urdea, M.S.6
  • 9
    • 25844523297 scopus 로고    scopus 로고
    • Consensus proposals for a unified system of nomenclature of hepatitis C virus genotypes
    • Simmonds P., Bukh J., Combet C., Deléage G., Enomoto N., Feinstone S., et al. Consensus proposals for a unified system of nomenclature of hepatitis C virus genotypes. Hepatology 2005, 42:962-973.
    • (2005) Hepatology , vol.42 , pp. 962-973
    • Simmonds, P.1    Bukh, J.2    Combet, C.3    Deléage, G.4    Enomoto, N.5    Feinstone, S.6
  • 10
    • 33846209513 scopus 로고    scopus 로고
    • Comparative analysis of hepatitis C virus phylogenies from coding and non-coding regions: the 5' untranslated region (UTR) fails to classify subtypes
    • Hraber P.T., Fischer W., Bruno W.J., Leitner T., Kuiken C. Comparative analysis of hepatitis C virus phylogenies from coding and non-coding regions: the 5' untranslated region (UTR) fails to classify subtypes. Virol J 2006, 3:103.
    • (2006) Virol J , vol.3 , pp. 103
    • Hraber, P.T.1    Fischer, W.2    Bruno, W.J.3    Leitner, T.4    Kuiken, C.5
  • 11
    • 34247186434 scopus 로고    scopus 로고
    • Use of sequence analysis of the NS5B region for routine genotyping of hepatitis C virus with reference to C/E1 and 5' untranslated region sequences
    • Murphy D.G., Willems B., Deschênes M., Hilzenrat N., Mousseau R., Sabbah S. Use of sequence analysis of the NS5B region for routine genotyping of hepatitis C virus with reference to C/E1 and 5' untranslated region sequences. J Clin Microbiol 2007, 45:1102-1112.
    • (2007) J Clin Microbiol , vol.45 , pp. 1102-1112
    • Murphy, D.G.1    Willems, B.2    Deschênes, M.3    Hilzenrat, N.4    Mousseau, R.5    Sabbah, S.6
  • 12
    • 38149136310 scopus 로고    scopus 로고
    • Evaluation of a new assay in comparison with reverse hybridization and sequencing methods for hepatitis C virus genotyping targeting both 5' noncoding and nonstructural 5b genomic regions
    • Martro E., Gonzalez V., Buckton A.J., Saludes V., Fernandez G., Matas L., et al. Evaluation of a new assay in comparison with reverse hybridization and sequencing methods for hepatitis C virus genotyping targeting both 5' noncoding and nonstructural 5b genomic regions. J Clin Microbiol 2008, 46:192-197.
    • (2008) J Clin Microbiol , vol.46 , pp. 192-197
    • Martro, E.1    Gonzalez, V.2    Buckton, A.J.3    Saludes, V.4    Fernandez, G.5    Matas, L.6
  • 13
    • 84880359255 scopus 로고    scopus 로고
    • A boceprevir failure in a patient infected with HCV-genotype 1g: importance and limitations of virus genotyping prior to HCV protease inhibitor-based therapy
    • Cento V., Landonio S., De Luca F., Di Maio V.C., Micheli V., Mirabelli C., et al. A boceprevir failure in a patient infected with HCV-genotype 1g: importance and limitations of virus genotyping prior to HCV protease inhibitor-based therapy. Antivir Ther (Lond) 2013, 18:645-648.
    • (2013) Antivir Ther (Lond) , vol.18 , pp. 645-648
    • Cento, V.1    Landonio, S.2    De Luca, F.3    Di Maio, V.C.4    Micheli, V.5    Mirabelli, C.6
  • 15
    • 34247254413 scopus 로고    scopus 로고
    • Improvement of hepatitis C virus (HCV) genotype determination with the new version of the INNO-LiPA HCV assay
    • Bouchardeau F., Cantaloube J.F., Chevaliez S., Portal C., Razer A., Lefrere J-J., et al. Improvement of hepatitis C virus (HCV) genotype determination with the new version of the INNO-LiPA HCV assay. J Clin Microbiol 2007, 45:1140-1145.
    • (2007) J Clin Microbiol , vol.45 , pp. 1140-1145
    • Bouchardeau, F.1    Cantaloube, J.F.2    Chevaliez, S.3    Portal, C.4    Razer, A.5    Lefrere, J.-J.6
  • 17
    • 77949514845 scopus 로고    scopus 로고
    • Virus (HCV) genotype 1 subtype identification in new HCV drug development and future clinical practice
    • Chevaliez S., Bouvier-Alias M., Brillet R., Pawlotsky J.-M., Hepatitis C. Virus (HCV) genotype 1 subtype identification in new HCV drug development and future clinical practice. PLoS ONE 2009, 4:e8209.
    • (2009) PLoS ONE , vol.4
    • Chevaliez, S.1    Bouvier-Alias, M.2    Brillet, R.3    Pawlotsky, J.-M.4    Hepatitis, C.5
  • 18
    • 61549118827 scopus 로고    scopus 로고
    • Nomenclature and numbering of the hepatitis C virus
    • Humana Press, H. Tang (Ed.)
    • Kuiken C., Simmonds P. Nomenclature and numbering of the hepatitis C virus. Hepatitis C 2009, 33-53. Humana Press. H. Tang (Ed.).
    • (2009) Hepatitis C , pp. 33-53
    • Kuiken, C.1    Simmonds, P.2
  • 19
    • 77949870919 scopus 로고    scopus 로고
    • Performance evaluation of the Abbott RealTime HCV genotype II for hepatitis C virus genotyping
    • Sohn Y.-H., Ko S.-Y., Kim M.H., Oh H.-B. Performance evaluation of the Abbott RealTime HCV genotype II for hepatitis C virus genotyping. Clin Chem Lab Med 2010, 48:469-474.
    • (2010) Clin Chem Lab Med , vol.48 , pp. 469-474
    • Sohn, Y.-H.1    Ko, S.-Y.2    Kim, M.H.3    Oh, H.-B.4
  • 20
    • 84865157684 scopus 로고    scopus 로고
    • Performance of the Abbott RealTime HCV genotype II RUO assay
    • Shinol R.C., Gale H.B., Kan V.L. Performance of the Abbott RealTime HCV genotype II RUO assay. J Clin Microbiol 2012, 50:3099-3101.
    • (2012) J Clin Microbiol , vol.50 , pp. 3099-3101
    • Shinol, R.C.1    Gale, H.B.2    Kan, V.L.3
  • 23
    • 84867502050 scopus 로고    scopus 로고
    • Evaluation of two hepatitis C virus genotyping assays based on the 5' untranslated region (UTR): the limitations of 5' UTR-based assays and the need for a supplementary sequencing-based approach
    • Hong S.K., Cho S.I., Ra E.K., Kim E.-C., Park J.S., Park S.S., et al. Evaluation of two hepatitis C virus genotyping assays based on the 5' untranslated region (UTR): the limitations of 5' UTR-based assays and the need for a supplementary sequencing-based approach. J Clin Microbiol 2012, 50:3741-3743.
    • (2012) J Clin Microbiol , vol.50 , pp. 3741-3743
    • Hong, S.K.1    Cho, S.I.2    Ra, E.K.3    Kim, E.-C.4    Park, J.S.5    Park, S.S.6
  • 24
    • 0032796827 scopus 로고    scopus 로고
    • Determination of hepatitis C virus genotype by direct sequence analysis of products generated with the amplicor HCV test
    • Germer J.J., Rys P.N., Thorvilson J.N., Persing D.H. Determination of hepatitis C virus genotype by direct sequence analysis of products generated with the amplicor HCV test. J Clin Microbiol 1999, 37:2625-2630.
    • (1999) J Clin Microbiol , vol.37 , pp. 2625-2630
    • Germer, J.J.1    Rys, P.N.2    Thorvilson, J.N.3    Persing, D.H.4
  • 25
    • 0027385067 scopus 로고
    • Characterization of the genomic sequence of type V (or 3a) hepatitis C virus isolates and PCR primers for specific detection
    • Okamoto H., Tokita H., Sakamoto M., Horikita M., Kojima M., Iizuka H., et al. Characterization of the genomic sequence of type V (or 3a) hepatitis C virus isolates and PCR primers for specific detection. J Gen Virol 1993, 74:2385-2390.
    • (1993) J Gen Virol , vol.74 , pp. 2385-2390
    • Okamoto, H.1    Tokita, H.2    Sakamoto, M.3    Horikita, M.4    Kojima, M.5    Iizuka, H.6
  • 26
    • 20844441405 scopus 로고    scopus 로고
    • Comparison of hepatitis C virus NS5b and 5' noncoding gene sequencing methods in a multicenter study
    • Laperche S., Lunel F., Izopet J., Alain S., Dény P., Duverlie G., et al. Comparison of hepatitis C virus NS5b and 5' noncoding gene sequencing methods in a multicenter study. J Clin Microbiol 2005, 43:733-739.
    • (2005) J Clin Microbiol , vol.43 , pp. 733-739
    • Laperche, S.1    Lunel, F.2    Izopet, J.3    Alain, S.4    Dény, P.5    Duverlie, G.6
  • 28
    • 84882774764 scopus 로고    scopus 로고
    • Sequencing assays for failed genotyping with the versant hepatitis C virus genotype assay (LiPA), version 2. 0
    • Larrat S., Poveda J.-D., Coudret C., Fusillier K., Magnat N., Signori-Schmuck A., et al. Sequencing assays for failed genotyping with the versant hepatitis C virus genotype assay (LiPA), version 2. 0. J Clin Microbiol 2013, 51:2815-2821.
    • (2013) J Clin Microbiol , vol.51 , pp. 2815-2821
    • Larrat, S.1    Poveda, J.-D.2    Coudret, C.3    Fusillier, K.4    Magnat, N.5    Signori-Schmuck, A.6
  • 29
    • 65449136656 scopus 로고    scopus 로고
    • Diagnosis, management, and treatment of hepatitis C: an update
    • Ghany M.G., Strader D.B., Thomas D.L., Seeff L.B. Diagnosis, management, and treatment of hepatitis C: an update. Hepatology 2009, 49:1335-1374.
    • (2009) Hepatology , vol.49 , pp. 1335-1374
    • Ghany, M.G.1    Strader, D.B.2    Thomas, D.L.3    Seeff, L.B.4
  • 31
    • 84880364236 scopus 로고    scopus 로고
    • Nucleotide polymorphisms in the 5'-UTR region of HCV can affect the ability of two widely used assays to assign an HCV genotype
    • Pollicita M., Cento V., Paba P., Perno C.F., Ciotti M. Nucleotide polymorphisms in the 5'-UTR region of HCV can affect the ability of two widely used assays to assign an HCV genotype. J Virol Methods 2013, 193:205-208.
    • (2013) J Virol Methods , vol.193 , pp. 205-208
    • Pollicita, M.1    Cento, V.2    Paba, P.3    Perno, C.F.4    Ciotti, M.5
  • 32
    • 33750944590 scopus 로고    scopus 로고
    • Genotyping hepatitis C viruses from Southeast Asia by a novel line probe assay that simultaneously detects core and 5' untranslated regions
    • Noppornpanth S., Sablon E., De Nys K., Lien T.X., Brouwer J., Van Brussel M., et al. Genotyping hepatitis C viruses from Southeast Asia by a novel line probe assay that simultaneously detects core and 5' untranslated regions. J Clin Microbiol 2006, 44:3969-3974.
    • (2006) J Clin Microbiol , vol.44 , pp. 3969-3974
    • Noppornpanth, S.1    Sablon, E.2    De Nys, K.3    Lien, T.X.4    Brouwer, J.5    Van Brussel, M.6
  • 33
    • 34547917617 scopus 로고    scopus 로고
    • Evaluation of a new-generation line-probe assay that detects 5' untranslated and core regions to genotype and subtype hepatitis C virus
    • Nadarajah R., Khan G., Miller S., Brooks G. Evaluation of a new-generation line-probe assay that detects 5' untranslated and core regions to genotype and subtype hepatitis C virus. Am J Clin Pathol 2007, 128:300-304.
    • (2007) Am J Clin Pathol , vol.128 , pp. 300-304
    • Nadarajah, R.1    Khan, G.2    Miller, S.3    Brooks, G.4
  • 34
    • 84873204061 scopus 로고    scopus 로고
    • Comparison of three different HCV genotyping methods: core, NS5B sequence analysis and line probe assay
    • Cai Q., Zhao Z., Liu Y., Shao X., Gao Z. Comparison of three different HCV genotyping methods: core, NS5B sequence analysis and line probe assay. Int J Mol Med 2013, 31:347-352.
    • (2013) Int J Mol Med , vol.31 , pp. 347-352
    • Cai, Q.1    Zhao, Z.2    Liu, Y.3    Shao, X.4    Gao, Z.5
  • 35
    • 78751544998 scopus 로고    scopus 로고
    • Genetic recombination of the hepatitis C virus: clinical implications: impacts of HCV recombination
    • Morel V., Fournier C., François C., Brochot E., Helle F., Duverlie G., et al. Genetic recombination of the hepatitis C virus: clinical implications: impacts of HCV recombination. J Viral Hepatitis 2011, 18:77-83.
    • (2011) J Viral Hepatitis , vol.18 , pp. 77-83
    • Morel, V.1    Fournier, C.2    François, C.3    Brochot, E.4    Helle, F.5    Duverlie, G.6


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