-
1
-
-
1842612577
-
Bacterial biofilms: From the natural environment to infectious diseases
-
DOI 10.1038/nrmicro821
-
Hall-Stoodley L, Costerton JW, Stoodley P (2004) Bacterial biofilms: From the natural environment to infectious diseases. Nat Rev Microbiol 2(2):95-108. (Pubitemid 39490064)
-
(2004)
Nature Reviews Microbiology
, vol.2
, Issue.2
, pp. 95-108
-
-
Hall-Stoodley, L.1
Costerton, J.W.2
Stoodley, P.3
-
2
-
-
33744981593
-
Microbial sciences: The superficial life of microbes
-
DOI 10.1038/441300a, PII 441300A
-
Kolter R, Greenberg EP (2006) Microbial sciences: The superficial life of microbes. Nature 441(7091):300-302. (Pubitemid 44050187)
-
(2006)
Nature
, vol.441
, Issue.7091
, pp. 300-302
-
-
Kolter, R.1
Greenberg, E.P.2
-
3
-
-
60349108749
-
The developmental model of microbial biofilms: Ten years of a paradigm up for review
-
Monds RD, O'Toole GA (2009) The developmental model of microbial biofilms: Ten years of a paradigm up for review. Trends Microbiol 17(2):73-87.
-
(2009)
Trends Microbiol
, vol.17
, Issue.2
, pp. 73-87
-
-
Monds, R.D.1
O'Toole, G.A.2
-
5
-
-
11444270529
-
Biofilms: The matrix revisited
-
DOI 10.1016/j.tim.2004.11.006, PII S0966842X04002604
-
Branda SS, Vik S, Friedman L, Kolter R (2005) Biofilms: The matrix revisited. Trends Microbiol 13(1):20-26. (Pubitemid 40082393)
-
(2005)
Trends in Microbiology
, vol.13
, Issue.1
, pp. 20-26
-
-
Branda, S.S.1
Vik, A.2
Friedman, L.3
Kolter, R.4
-
6
-
-
0035992362
-
Mechanisms of antibiotic resistance in bacterial biofilms
-
Stewart PS (2002) Mechanisms of antibiotic resistance in bacterial biofilms. Int J Med Microbiol 292(2):107-113.
-
(2002)
Int J Med Microbiol
, vol.292
, Issue.2
, pp. 107-113
-
-
Stewart, P.S.1
-
8
-
-
2342506169
-
-
eds Walker J, Surman S, Jass J (John Wiley & Sons, New York)
-
Jass J, Walker J (2000) Industrial Biofouling: Detection, Prevention and Control, eds Walker J, Surman S, Jass J (John Wiley & Sons, New York).
-
(2000)
Industrial Biofouling: Detection, Prevention and Control
-
-
Jass, J.1
Walker, J.2
-
9
-
-
0042410586
-
Evolution of cooperation and conflict in experimental bacterial populations
-
DOI 10.1038/nature01906
-
Rainey PB, Rainey K (2003) Evolution of cooperation and conflict in experimental bacterial populations. Nature 425(6953):72-74. (Pubitemid 37101718)
-
(2003)
Nature
, vol.425
, Issue.6953
, pp. 72-74
-
-
Rainey, P.B.1
Rainey, K.2
-
10
-
-
84883811817
-
Pseudomonas aeruginosa: New insights into pathogenesis and host defenses
-
Gellatly SL, Hancock REW (2013) Pseudomonas aeruginosa: New insights into pathogenesis and host defenses. Pathog Dis 67(3):159-173.
-
(2013)
Pathog Dis
, vol.67
, Issue.3
, pp. 159-173
-
-
Gellatly, S.L.1
Hancock, R.E.W.2
-
11
-
-
0025573554
-
Microbial mats and the early evolution of life
-
Des Marais DJ (1990) Microbial mats and the early evolution of life. Trends Ecol Evol 5(5):140-144.
-
(1990)
Trends Ecol Evol
, vol.5
, Issue.5
, pp. 140-144
-
-
Des Marais, D.J.1
-
12
-
-
39149100341
-
Physiological heterogeneity in biofilms
-
DOI 10.1038/nrmicro1838, PII NRMICRO1838
-
Stewart PS, Franklin MJ (2008) Physiological heterogeneity in biofilms. Nat Rev Microbiol 6(3):199-210. (Pubitemid 351256315)
-
(2008)
Nature Reviews Microbiology
, vol.6
, Issue.3
, pp. 199-210
-
-
Stewart, P.S.1
Franklin, M.J.2
-
13
-
-
0014083610
-
A kinetic study of the mode of growth of surface colonies of bacteria and fungi
-
Pirt SJ (1967) A kinetic study of the mode of growth of surface colonies of bacteria and fungi. J Gen Microbiol 47(2):181-197.
-
(1967)
J Gen Microbiol
, vol.47
, Issue.2
, pp. 181-197
-
-
Pirt, S.J.1
-
15
-
-
0023239111
-
Oxygen profiles in, and in the agar beneath, colonies of Bacillus cereus, Staphylococcus albus and Escherichia coli
-
Peters AC, Wimpenny JW, Coombs JP (1987) Oxygen profiles in, and in the agar beneath, colonies of Bacillus cereus, Staphylococcus albus and Escherichia coli. J Gen Microbiol 133(5):1257-1263. (Pubitemid 17086143)
-
(1987)
Journal of General Microbiology
, vol.133
, Issue.5
, pp. 1257-1263
-
-
Peters, A.C.1
Wimpenny, J.W.T.2
Coombs, J.P.3
-
16
-
-
0037226597
-
Contributions of antibiotic penetration, oxygen limitation, and low metabolic activity to tolerance of Pseudomonas aeruginosa biofilms to ciprofloxacin and tobramycin
-
DOI 10.1128/AAC.47.1.317-323.2003
-
Walters MC, 3rd, Roe F, Bugnicourt A, Franklin MJ, Stewart PS (2003) Contributions of antibiotic penetration, oxygen limitation, and low metabolic activity to tolerance of Pseudomonas aeruginosa biofilms to ciprofloxacin and tobramycin. Antimicrob Agents Chemother 47(1):317-323. (Pubitemid 36070381)
-
(2003)
Antimicrobial Agents and Chemotherapy
, vol.47
, Issue.1
, pp. 317-323
-
-
Walters III, M.C.1
Roe, F.2
Bugnicourt, A.3
Franklin, M.J.4
Stewart, P.S.5
-
17
-
-
0031710092
-
Spatial physiological heterogeneity in Pseudomonas aeruginosa biofilm is determined by oxygen availability
-
Xu KD, Stewart PS, Xia F, Huang CT, McFeters GA (1998) Spatial physiological heterogeneity in Pseudomonas aeruginosa biofilm is determined by oxygen availability. Appl Environ Microbiol 64(10):4035-4039. (Pubitemid 28463010)
-
(1998)
Applied and Environmental Microbiology
, vol.64
, Issue.10
, pp. 4035-4039
-
-
Xu, K.D.1
Stewart, P.S.2
Xia, F.3
Huang, C.-T.4
McFeters, G.A.5
-
20
-
-
66849089902
-
Social evolution of spatial patterns in bacterial biofilms: When conflict drives disorder
-
Xavier JB, Martinez-Garcia E, Foster KR (2009) Social evolution of spatial patterns in bacterial biofilms: When conflict drives disorder. Am Nat 174(1):1-12.
-
(2009)
Am Nat
, vol.174
, Issue.1
, pp. 1-12
-
-
Xavier, J.B.1
Martinez-Garcia, E.2
Foster, K.R.3
-
21
-
-
34249794867
-
Spatial patterns of DNA replication, protein synthesis, and oxygen concentration within bacterial biofilms reveal diverse physiological states
-
DOI 10.1128/JB.00107-07
-
Rani SA, et al. (2007) Spatial patterns of DNA replication, protein synthesis, and oxygen concentration within bacterial biofilms reveal diverse physiological states. J Bacteriol 189(11):4223-4233. (Pubitemid 46847371)
-
(2007)
Journal of Bacteriology
, vol.189
, Issue.11
, pp. 4223-4233
-
-
Rani, S.A.1
Pitts, B.2
Beyenal, H.3
Veluchamy, R.A.4
Lewandowski, Z.5
Davison, W.M.6
Buckingham-Meyer, K.7
Stewart, P.S.8
-
22
-
-
0027019409
-
Pattern and control in bacterial colony development
-
Shapiro JA (1992) Pattern and control in bacterial colony development. Sci Prog 76(301-302 Pt 3-4):399-424.
-
(1992)
Sci Prog
, vol.76
, Issue.301-302 PART 3-4
, pp. 399-424
-
-
Shapiro, J.A.1
-
23
-
-
70350414428
-
Cannibalism enhances biofilm development in Bacillus subtilis
-
López D, Vlamakis H, Losick R, Kolter R (2009) Cannibalism enhances biofilm development in Bacillus subtilis. Mol Microbiol 74(3):609-618.
-
(2009)
Mol Microbiol
, vol.74
, Issue.3
, pp. 609-618
-
-
López, D.1
Vlamakis, H.2
Losick, R.3
Kolter, R.4
-
24
-
-
80052147742
-
A fitness trade-off between local competition and dispersal in Vibrio cholerae biofilms
-
Nadell CD, Bassler BL (2011) A fitness trade-off between local competition and dispersal in Vibrio cholerae biofilms. Proc Natl Acad Sci USA 108(34):14181-14185.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, Issue.34
, pp. 14181-14185
-
-
Nadell, C.D.1
Bassler, B.L.2
-
25
-
-
37349027967
-
Gac/Rsm signal transduction pathway of gamma-proteobacteria: From RNA recognition to regulation of social behaviour
-
DOI 10.1111/j.1365-2958.2007.06042.x
-
Lapouge K, Schubert M, Allain FH-T, Haas D (2008) Gac/Rsm signal transduction pathway of gamma-proteobacteria: From RNA recognition to regulation of social behaviour. Mol Microbiol 67(2):241-253. (Pubitemid 350295835)
-
(2008)
Molecular Microbiology
, vol.67
, Issue.2
, pp. 241-253
-
-
Lapouge, K.1
Schubert, M.2
Allain, F.H.-T.3
Haas, D.4
-
26
-
-
11844261548
-
Molecular nature of spontaneous modifications in gacS which cause colony phase variation in Pseudomonas sp. strain PCL1171
-
DOI 10.1128/JB.187.2.593-600.2005
-
van den Broek D, Chin-A-Woeng TFC, Bloemberg GV, Lugtenberg BJJ (2005) Molecular nature of spontaneous modifications in gacS which cause colony phase variation in Pseudomonas sp. strain PCL1171. J Bacteriol 187(2):593-600. (Pubitemid 40096246)
-
(2005)
Journal of Bacteriology
, vol.187
, Issue.2
, pp. 593-600
-
-
Van Den, B.D.1
Chin-A-Woeng, T.F.C.2
Bloemberg, G.V.3
Lugtenberg, B.J.J.4
-
27
-
-
33646582604
-
Rhizosphere selection of highly motile phenotypic variants of Pseudomonas fluorescens with enhanced competitive colonization ability
-
Martínez-Granero F, Rivilla R, Martín M (2006) Rhizosphere selection of highly motile phenotypic variants of Pseudomonas fluorescens with enhanced competitive colonization ability. Appl Environ Microbiol 72(5):3429-3434.
-
(2006)
Appl Environ Microbiol
, vol.72
, Issue.5
, pp. 3429-3434
-
-
Martínez-Granero, F.1
Rivilla, R.2
Martín, M.3
-
28
-
-
84857385762
-
The Gac-Rsm and SadB signal transduction pathways converge on AlgU to downregulate motility in Pseudomonas fluorescens
-
Martínez-Granero F, et al. (2012) The Gac-Rsm and SadB signal transduction pathways converge on AlgU to downregulate motility in Pseudomonas fluorescens. PLoS ONE 7 (2):e31765.
-
(2012)
PLoS ONE
, vol.7
, Issue.2
-
-
Martínez-Granero, F.1
-
29
-
-
11144346281
-
Posttranscriptional repression of GacS/GacA-controlled genes by the RNA-binding protein RsmE acting together with RsmA in the biocontrol strain Pseudomonas fluorescens CHA0
-
DOI 10.1128/JB.187.1.276-285.2005
-
Reimmann C, Valverde C, Kay E, Haas D (2005) Posttranscriptional repression of GacS/GacA-controlled genes by the RNA-binding protein RsmE acting together with RsmA in the biocontrol strain Pseudomonas fluorescens CHA0. J Bacteriol 187(1):276-285. (Pubitemid 40024204)
-
(2005)
Journal of Bacteriology
, vol.187
, Issue.1
, pp. 276-285
-
-
Reimmann, C.1
Valverde, C.2
Kay, E.3
Haas, D.4
-
30
-
-
77957229743
-
Pseudomonas aeruginosa biofilm matrix polysaccharide Psl is regulated transcriptionally by RpoS and post-transcriptionally by RsmA
-
Irie Y, et al. (2010) Pseudomonas aeruginosa biofilm matrix polysaccharide Psl is regulated transcriptionally by RpoS and post-transcriptionally by RsmA. Mol Microbiol 78(1):158-172.
-
(2010)
Mol Microbiol
, vol.78
, Issue.1
, pp. 158-172
-
-
Irie, Y.1
-
31
-
-
84884510558
-
Roles of the Gac-Rsm pathway in the regulation of phenazine biosynthesis in Pseudomonas chlororaphis 30-84
-
Wang D, et al. (2013) Roles of the Gac-Rsm pathway in the regulation of phenazine biosynthesis in Pseudomonas chlororaphis 30-84. Microbiologyopen 2(3):505-524.
-
(2013)
Microbiologyopen
, vol.2
, Issue.3
, pp. 505-524
-
-
Wang, D.1
-
32
-
-
84864591224
-
Comparative genomics of plant-associated Pseudomonas spp.: Insights into diversity and inheritance of traits involved in multitrophic interactions
-
Loper JE, et al. (2012) Comparative genomics of plant-associated Pseudomonas spp.: Insights into diversity and inheritance of traits involved in multitrophic interactions. PLoS Genet 8(7):e1002784.
-
(2012)
PLoS Genet
, vol.8
, Issue.7
-
-
Loper, J.E.1
-
33
-
-
61449239026
-
Tuberculosis drug resistance mutation database
-
Sandgren A, et al. (2009) Tuberculosis drug resistance mutation database. PLoS Med 6(2):e2.
-
(2009)
PLoS Med
, vol.6
, Issue.2
-
-
Sandgren, A.1
-
34
-
-
62149084484
-
The distribution of fitness effects of beneficial mutations in Pseudomonas aeruginosa
-
MacLean RC, Buckling A (2009) The distribution of fitness effects of beneficial mutations in Pseudomonas aeruginosa. PLoS Genet 5(3):e1000406.
-
(2009)
PLoS Genet
, vol.5
, Issue.3
-
-
MacLean, R.C.1
Buckling, A.2
-
35
-
-
40849138236
-
Estimating the per-base-pair mutation rate in the yeast Saccharomyces cerevisiae
-
DOI 10.1534/genetics.107.071506
-
Lang GI, Murray AW (2008) Estimating the per-base-pair mutation rate in the yeast Saccharomyces cerevisiae. Genetics 178(1):67-82. (Pubitemid 351398732)
-
(2008)
Genetics
, vol.178
, Issue.1
, pp. 67-82
-
-
Lang, G.I.1
Murray, A.W.2
-
36
-
-
78650237493
-
A molecular mechanism that stabilizes cooperative secretions in Pseudomonas aeruginosa
-
Xavier JB, Kim W, Foster KR (2011) A molecular mechanism that stabilizes cooperative secretions in Pseudomonas aeruginosa. Mol Microbiol 79(1):166-179.
-
(2011)
Mol Microbiol
, vol.79
, Issue.1
, pp. 166-179
-
-
Xavier, J.B.1
Kim, W.2
Foster, K.R.3
-
37
-
-
41949089310
-
Pseudomonas aeruginosa exhibits sliding motility in the absence of type IV pili and flagella
-
DOI 10.1128/JB.01620-07
-
Murray TS, Kazmierczak BI (2008) Pseudomonas aeruginosa exhibits sliding motility in the absence of type IV pili and flagella. J Bacteriol 190(8):2700-2708. (Pubitemid 351508170)
-
(2008)
Journal of Bacteriology
, vol.190
, Issue.8
, pp. 2700-2708
-
-
Murray, T.S.1
Kazmierczak, B.I.2
-
38
-
-
84886012945
-
The genome of Pseudomonas fluorescens strain R124 demonstrates phenotypic adaptation to the mineral environment
-
Barton MD, Petronio M, Giarrizzo JG, Bowling BV, Barton HA (2013) The genome of Pseudomonas fluorescens strain R124 demonstrates phenotypic adaptation to the mineral environment. J Bacteriol 195(21):4793-4803.
-
(2013)
J Bacteriol
, vol.195
, Issue.21
, pp. 4793-4803
-
-
Barton, M.D.1
Petronio, M.2
Giarrizzo, J.G.3
Bowling, B.V.4
Barton, H.A.5
-
39
-
-
34548511320
-
Molecular basis of messenger RNA recognition by the specific bacterial repressing clamp RsmA/CsrA
-
DOI 10.1038/nsmb1285, PII NSMB1285
-
Schubert M, et al. (2007) Molecular basis of messenger RNA recognition by the specific bacterial repressing clamp RsmA/CsrA. Nat Struct Mol Biol 14(9):807-813. (Pubitemid 47373832)
-
(2007)
Nature Structural and Molecular Biology
, vol.14
, Issue.9
, pp. 807-813
-
-
Schubert, M.1
Lapouge, K.2
Duss, O.3
Oberstrass, F.C.4
Jelesarov, I.5
Haas, D.6
Allain, F.H.-T.7
-
40
-
-
33846009817
-
Comprehensive alanine-scanning mutagenesis of Escherichia coli CsrA defines two subdomains of critical functional importance
-
DOI 10.1074/jbc.M606057200
-
Mercante J, Suzuki K, Cheng X, Babitzke P, Romeo T (2006) Comprehensive alanine-scanning mutagenesis of Escherichia coli CsrA defines two subdomains of critical functional importance. J Biol Chem 281(42):31832-31842. (Pubitemid 46043264)
-
(2006)
Journal of Biological Chemistry
, vol.281
, Issue.42
, pp. 31832-31842
-
-
Mercante, J.1
Suzuki, K.2
Cheng, X.3
Babitzke, P.4
Romeo, T.5
-
42
-
-
84883487889
-
Structural rearrangement in an RsmA/CsrA ortholog of Pseudomonas aeruginosa creates a dimeric RNA-binding protein, RsmN
-
Morris ER, et al. (2013) Structural rearrangement in an RsmA/CsrA ortholog of Pseudomonas aeruginosa creates a dimeric RNA-binding protein, RsmN. Structure 21 (9):1659-1671.
-
(2013)
Structure
, vol.21
, Issue.9
, pp. 1659-1671
-
-
Morris, E.R.1
-
43
-
-
0023696644
-
Survival of rifampin-resistant mutants of Pseudomonas fluorescens and Pseudomonas putida in soil systems
-
Compeau G, Al-Achi BJ, Platsouka E, Levy SB (1988) Survival of rifampin-resistant mutants of Pseudomonas fluorescens and Pseudomonas putida in soil systems. Appl Environ Microbiol 54(10):2432-2438.
-
(1988)
Appl Environ Microbiol
, vol.54
, Issue.10
, pp. 2432-2438
-
-
Compeau, G.1
Al-Achi, B.J.2
Platsouka, E.3
Levy, S.B.4
-
44
-
-
43349086724
-
Two simple media for the demonstration of pyocyanin and fluorescin
-
King EO, Ward MK, Raney DE (1954) Two simple media for the demonstration of pyocyanin and fluorescin. J Lab Clin Med 44(2):301-307.
-
(1954)
J Lab Clin Med
, vol.44
, Issue.2
, pp. 301-307
-
-
King, E.O.1
Ward, M.K.2
Raney, D.E.3
-
45
-
-
67149100891
-
Requirement of polyphosphate by Pseudomonas fluorescens Pf0-1 for competitive fitness and heat tolerance in laboratory media and sterile soil
-
Silby MW, Nicoll JS, Levy SB (2009) Requirement of polyphosphate by Pseudomonas fluorescens Pf0-1 for competitive fitness and heat tolerance in laboratory media and sterile soil. Appl Environ Microbiol 75(12):3872-3881.
-
(2009)
Appl Environ Microbiol
, vol.75
, Issue.12
, pp. 3872-3881
-
-
Silby, M.W.1
Nicoll, J.S.2
Levy, S.B.3
-
46
-
-
3042786311
-
Mini-Tn7 transposons for site-specific tagging of bacteria with fluorescent proteins
-
DOI 10.1111/j.1462-2920.2004.00605.x
-
Lambertsen L, Sternberg C, Molin S (2004) Mini-Tn7 transposons for site-specific tagging of bacteria with fluorescent proteins. Environ Microbiol 6(7):726-732. (Pubitemid 38847737)
-
(2004)
Environmental Microbiology
, vol.6
, Issue.7
, pp. 726-732
-
-
Lambertsen, L.1
Sternberg, C.2
Molin, S.3
-
47
-
-
0026279651
-
Long-term experimental evolution in Escherichia coli. I. Adaptation and divergence during 2,000 generations
-
Lenski RE, Rose MR, Simpson SC, Tadler SC (1991) Long-term experimental evolution in Escherichia coli. I. Adaptation and divergence during 2,000 generations. Am Nat 138(6):1315-1341.
-
(1991)
Am Nat
, vol.138
, Issue.6
, pp. 1315-1341
-
-
Lenski, R.E.1
Rose, M.R.2
Simpson, S.C.3
Tadler, S.C.4
-
48
-
-
0024556150
-
Engineering hybrid genes without the use of restriction enzymes: Gene splicing by overlap extension
-
DOI 10.1016/0378-1119(89)90359-4
-
Horton RM, Hunt HD, Ho SN, Pullen JK, Pease LR (1989) Engineering hybrid genes without the use of restriction enzymes: Gene splicing by overlap extension. Gene 77 (1):61-68. (Pubitemid 19125654)
-
(1989)
Gene
, vol.77
, Issue.1
, pp. 61-68
-
-
Horton, R.M.1
Hunt, H.D.2
Ho, S.N.3
Pullen, J.K.4
Pease, L.R.5
-
49
-
-
6044274610
-
Use of in vivo expression technology to identify genes important in growth and survival of Pseudomonas fluorescens Pf0-1 in soil: Discovery of expressed sequences with novel genetic organization
-
DOI 10.1128/JB.186.21.7411-7419.2004
-
Silby MW, Levy SB (2004) Use of in vivo expression technology to identify genes important in growth and survival of Pseudomonas fluorescens Pf0-1 in soil: Discovery of expressed sequences with novel genetic organization. J Bacteriol 186(21):7411-7419. (Pubitemid 39383126)
-
(2004)
Journal of Bacteriology
, vol.186
, Issue.21
, pp. 7411-7419
-
-
Silby, M.W.1
Levy, S.B.2
-
50
-
-
77950831062
-
Emergence of spatial structure in cell groups and the evolution of cooperation
-
Nadell CD, Foster KR, Xavier JB (2010) Emergence of spatial structure in cell groups and the evolution of cooperation. PLOS Comput Biol 6(3):e1000716.
-
(2010)
PLOS Comput Biol
, vol.6
, Issue.3
-
-
Nadell, C.D.1
Foster, K.R.2
Xavier, J.B.3
-
51
-
-
84870266477
-
The evolution of mutualism in gut microbiota via host epithelial selection
-
Schluter J, Foster KR (2012) The evolution of mutualism in gut microbiota via host epithelial selection. PLoS Biol 10(11):e1001424.
-
(2012)
PLoS Biol
, vol.10
, Issue.11
-
-
Schluter, J.1
Foster, K.R.2
-
52
-
-
79960620426
-
Social evolution in multispecies biofilms
-
Mitri S, Xavier JB, Foster KR (2011) Social evolution in multispecies biofilms. Proc Natl Acad Sci USA 108(Suppl 2):10839-10846.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, Issue.SUPPL. 2
, pp. 10839-10846
-
-
Mitri, S.1
Xavier, J.B.2
Foster, K.R.3
|