메뉴 건너뛰기




Volumn 4, Issue 8, 2014, Pages 1381-1388

Genomic heritability estimation for the early life-history transition related to propensity to migrate in wild rainbow and steelhead trout populations

Author keywords

Genomic heritability estimation; Genomic prediction; Oncorhynchus mykiss; Smoltification

Indexed keywords


EID: 84898954057     PISSN: None     EISSN: 20457758     Source Type: Journal    
DOI: 10.1002/ece3.1038     Document Type: Article
Times cited : (5)

References (38)
  • 1
    • 33847032038 scopus 로고    scopus 로고
    • Effective population size of steelhead trout: influence of variance in reproductive success, hatchery programs, and genetic compensation between life-history forms
    • Araki, H., R. S. Waples, W. R. Ardren, B. Cooper, and M. S. Blouin 2007. Effective population size of steelhead trout: influence of variance in reproductive success, hatchery programs, and genetic compensation between life-history forms. Mol. Ecol. 16:953-966.
    • (2007) Mol. Ecol. , vol.16 , pp. 953-966
    • Araki, H.1    Waples, R.S.2    Ardren, W.R.3    Cooper, B.4    Blouin, M.S.5
  • 4
    • 84898934173 scopus 로고    scopus 로고
    • Mixed model methods for genomic prediction and variance component estimation of additive and dominance effects using SNP markers
    • Da, Y., C. Wang, S. Wang, and G. Hu 2014. Mixed model methods for genomic prediction and variance component estimation of additive and dominance effects using SNP markers. PLoS ONE 9:e87666.
    • (2014) PLoS ONE , vol.9
    • Da, Y.1    Wang, C.2    Wang, S.3    Hu, G.4
  • 5
    • 0024251477 scopus 로고
    • Early sexual maturation in males of wild sea trout, Salmo trutta L., inhibits smoltification
    • Dellefors, C., and U. Faremo 1988. Early sexual maturation in males of wild sea trout, Salmo trutta L., inhibits smoltification. J. Fish Biol. 33:741-749.
    • (1988) J. Fish Biol. , vol.33 , pp. 741-749
    • Dellefors, C.1    Faremo, U.2
  • 6
    • 0001118328 scopus 로고
    • Heritability of threshold characters
    • Dempster, E. R., and I. M. Lerner 1950. Heritability of threshold characters. Genetics 35:212-236.
    • (1950) Genetics , vol.35 , pp. 212-236
    • Dempster, E.R.1    Lerner, I.M.2
  • 8
    • 77957209900 scopus 로고
    • Evolutionary genetics of animal migration
    • Dingle, H. 1991. Evolutionary genetics of animal migration. Am. Zool. 31:253-264.
    • (1991) Am. Zool. , vol.31 , pp. 253-264
    • Dingle, H.1
  • 9
    • 0038323117 scopus 로고    scopus 로고
    • Genetic comparison between sympatric anadromous steelhead and freshwater resident rainbow trout in British Columbia, Canada
    • Docker, M., and D. Heath 2003. Genetic comparison between sympatric anadromous steelhead and freshwater resident rainbow trout in British Columbia, Canada. Conserv. Genet. 4:227-231.
    • (2003) Conserv. Genet. , vol.4 , pp. 227-231
    • Docker, M.1    Heath, D.2
  • 10
    • 0000018490 scopus 로고
    • Sire evaluation for ordered categorical data with a threshold model
    • Gianola, D., and J. Foulley 1983. Sire evaluation for ordered categorical data with a threshold model. Genet. Sel. Evol. 15:201-224.
    • (1983) Genet. Sel. Evol. , vol.15 , pp. 201-224
    • Gianola, D.1    Foulley, J.2
  • 11
    • 80755167697 scopus 로고    scopus 로고
    • Using the genomic relationship matrix to predict the accuracy of genomic selection
    • Goddard, M. E., B. J. Hayes, and T. H. E. Meuwissen 2011. Using the genomic relationship matrix to predict the accuracy of genomic selection. J. Anim. Breed. Genet. 128:409-421.
    • (2011) J. Anim. Breed. Genet. , vol.128 , pp. 409-421
    • Goddard, M.E.1    Hayes, B.J.2    Meuwissen, T.H.E.3
  • 12
    • 78649284882 scopus 로고    scopus 로고
    • Genome-wide association and genomic selection in animal breeding
    • Hayes, B., and M. Goddard 2010. Genome-wide association and genomic selection in animal breeding. Genome 53:876-883.
    • (2010) Genome , vol.53 , pp. 876-883
    • Hayes, B.1    Goddard, M.2
  • 13
    • 59349098163 scopus 로고    scopus 로고
    • Invited review: genomic selection in dairy cattle: progress and challenges
    • Hayes, B. J., P. J. Bowman, A. J. Chamberlain, and M. E. Goddard 2009. Invited review: genomic selection in dairy cattle: progress and challenges. J. Dairy Sci. 92:433-443.
    • (2009) J. Dairy Sci. , vol.92 , pp. 433-443
    • Hayes, B.J.1    Bowman, P.J.2    Chamberlain, A.J.3    Goddard, M.E.4
  • 14
    • 84883150910 scopus 로고    scopus 로고
    • Genetic architecture of migration-related traits in rainbow and steelhead trout, Oncorhynchus mykiss
    • Hecht, B. C., F. P. Thrower, M. C. Hale, M. R. Miller, and K. M. Nichols 2012. Genetic architecture of migration-related traits in rainbow and steelhead trout, Oncorhynchus mykiss. G3 2:1113-1127.
    • (2012) G3 , vol.2 , pp. 1113-1127
    • Hecht, B.C.1    Thrower, F.P.2    Hale, M.C.3    Miller, M.R.4    Nichols, K.M.5
  • 15
    • 84878438897 scopus 로고    scopus 로고
    • Genome-wide association reveals genetic basis for the propensity to migrate in wild populations of rainbow and steelhead trout
    • Hecht, B. C., N. R. Campbell, D. E. Holecek, and S. R. Narum 2013. Genome-wide association reveals genetic basis for the propensity to migrate in wild populations of rainbow and steelhead trout. Mol. Ecol. 22:3061-3076.
    • (2013) Mol. Ecol. , vol.22 , pp. 3061-3076
    • Hecht, B.C.1    Campbell, N.R.2    Holecek, D.E.3    Narum, S.R.4
  • 16
    • 0000249860 scopus 로고
    • Smolt transformation: evolution, behavior, and physiology
    • Hoar, W. S. 1976. Smolt transformation: evolution, behavior, and physiology. J. Fish. Res. Board Can. 33:1233-1252.
    • (1976) J. Fish. Res. Board Can. , vol.33 , pp. 1233-1252
    • Hoar, W.S.1
  • 17
    • 77956819813 scopus 로고
    • The physiology of smolting salmon
    • in W. S. Hoar and D. J. Randall, eds. Academic Press, San Diego, CA.
    • Hoar, W. S. 1988. The physiology of smolting salmon. Pp. 275-344 in W. S. Hoar and D. J. Randall, eds. Fish physiology. Academic Press, San Diego, CA.
    • (1988) Fish physiology , pp. 275-344
    • Hoar, W.S.1
  • 18
    • 0033104305 scopus 로고    scopus 로고
    • Heritable variation and evolution under favourable and unfavourable conditions
    • Hoffmann, A. A., and J. Merila 1999. Heritable variation and evolution under favourable and unfavourable conditions. Trends Ecol. Evol. 14:96-101.
    • (1999) Trends Ecol. Evol. , vol.14 , pp. 96-101
    • Hoffmann, A.A.1    Merila, J.2
  • 19
    • 84863411206 scopus 로고    scopus 로고
    • Smoltification in an impounded, adfluvial redband trout population upstream from an impassable dam: does it persist?
    • Holecek, D. E., D. L. Scarnecchia, and S. E. Miller 2012. Smoltification in an impounded, adfluvial redband trout population upstream from an impassable dam: does it persist? Trans. Am. Fish. Soc. 141:68-75.
    • (2012) Trans. Am. Fish. Soc. , vol.141 , pp. 68-75
    • Holecek, D.E.1    Scarnecchia, D.L.2    Miller, S.E.3
  • 20
    • 22944478702 scopus 로고    scopus 로고
    • Linear and threshold model genetic parameters for disease, fertility and milk production in dairy cattle
    • Kadarmideen, H. N., R. Thompson, and G. Simm 2000. Linear and threshold model genetic parameters for disease, fertility and milk production in dairy cattle. Anim. Sci. 71:411-419.
    • (2000) Anim. Sci. , vol.71 , pp. 411-419
    • Kadarmideen, H.N.1    Thompson, R.2    Simm, G.3
  • 21
    • 79952489475 scopus 로고    scopus 로고
    • Estimating missing heritability for disease from genome-wide association studies
    • Lee, S. H., N. R. Wray, M. E. Goddard, and P. M. Visscher 2011. Estimating missing heritability for disease from genome-wide association studies. Am. J. Hum. Genet. 88:294-305.
    • (2011) Am. J. Hum. Genet. , vol.88 , pp. 294-305
    • Lee, S.H.1    Wray, N.R.2    Goddard, M.E.3    Visscher, P.M.4
  • 22
    • 84867284056 scopus 로고    scopus 로고
    • Estimation of pleiotropy between complex diseases using single-nucleotide polymorphism-derived genomic relationships and restricted maximum likelihood
    • Lee, S. H., J. Yang, M. E. Goddard, P. M. Visscher, and N. R. Wray 2012. Estimation of pleiotropy between complex diseases using single-nucleotide polymorphism-derived genomic relationships and restricted maximum likelihood. Bioinformatics 28:2540-2542.
    • (2012) Bioinformatics , vol.28 , pp. 2540-2542
    • Lee, S.H.1    Yang, J.2    Goddard, M.E.3    Visscher, P.M.4    Wray, N.R.5
  • 23
    • 0003873122 scopus 로고    scopus 로고
    • Chapter 25 Threshold characters
    • in M. Lynch and B. Walsh, eds. Sinauer, Sunderland, MA.
    • Lynch, M., and B. Walsh 1998. Chapter 25 Threshold characters. Pp. 727-744 in M. Lynch and B. Walsh, eds. Genetics and analysis of quantitative traits. Sinauer, Sunderland, MA.
    • (1998) Genetics and analysis of quantitative traits , pp. 727-744
    • Lynch, M.1    Walsh, B.2
  • 24
    • 49049108362 scopus 로고    scopus 로고
    • Parallel and serial computing tools for testing single-locus and epistatic SNP effects of quantitative traits in genomewide association studies
    • Ma, L., H. B. Runesha, D. Dvorkin, J. R. Garbe, and Y. Da 2008. Parallel and serial computing tools for testing single-locus and epistatic SNP effects of quantitative traits in genomewide association studies. BMC Bioinformatics 9:1471-2105.
    • (2008) BMC Bioinformatics , vol.9 , pp. 1471-2105
    • Ma, L.1    Runesha, H.B.2    Dvorkin, D.3    Garbe, J.R.4    Da, Y.5
  • 25
    • 84855456602 scopus 로고    scopus 로고
    • A conserved haplotype controls parallel adaptation in geographically distant salmonid populations
    • Miller, M. R., J. P. Brunelli, P. A. Wheeler, S. Liu, C. E. III Rexroad, Y. Palti, et al. 2012. A conserved haplotype controls parallel adaptation in geographically distant salmonid populations. Mol. Ecol. 21:237-249.
    • (2012) Mol. Ecol. , vol.21 , pp. 237-249
    • Miller, M.R.1    Brunelli, J.P.2    Wheeler, P.A.3    Liu, S.4    Rexroad, C.E.I.5    Palti, Y.6
  • 26
    • 4143154186 scopus 로고    scopus 로고
    • Genetic divergence of sympatric resident and anadromous forms of Oncorhynchus mykiss in the Walla Walla River, USA
    • Narum, S. R., C. Contor, A. Talbot, and M. S. Powell 2004. Genetic divergence of sympatric resident and anadromous forms of Oncorhynchus mykiss in the Walla Walla River, USA. J. Fish Biol. 65:471-488.
    • (2004) J. Fish Biol. , vol.65 , pp. 471-488
    • Narum, S.R.1    Contor, C.2    Talbot, A.3    Powell, M.S.4
  • 27
    • 52049111177 scopus 로고    scopus 로고
    • The genetic basis of smoltification-related traits in Oncorhynchus mykiss
    • Nichols, K. M., A. F. Edo, P. A. Wheeler, and G. H. Thorgaard 2008. The genetic basis of smoltification-related traits in Oncorhynchus mykiss. Genetics 179:1559-1575.
    • (2008) Genetics , vol.179 , pp. 1559-1575
    • Nichols, K.M.1    Edo, A.F.2    Wheeler, P.A.3    Thorgaard, G.H.4
  • 28
    • 33748904738 scopus 로고    scopus 로고
    • Evidence of partial anadromy and resident-form dispersal bias on a fine scale in populations of Oncorhynchus mykiss
    • Olsen, J., K. Wuttig, D. Fleming, E. Kretschmer, and J. Wenburg 2006. Evidence of partial anadromy and resident-form dispersal bias on a fine scale in populations of Oncorhynchus mykiss. Conserv. Genet. 7:613-619.
    • (2006) Conserv. Genet. , vol.7 , pp. 613-619
    • Olsen, J.1    Wuttig, K.2    Fleming, D.3    Kretschmer, E.4    Wenburg, J.5
  • 29
    • 0036247681 scopus 로고    scopus 로고
    • First documented case of anadromy in a population of introduced rainbow trout in Patagonia, Argentina: response to comment
    • Pascual, M., M. Kinnison, and C. Riva Rossi 2002. First documented case of anadromy in a population of introduced rainbow trout in Patagonia, Argentina: response to comment. Trans. Am. Fish. Soc. 131:585-588.
    • (2002) Trans. Am. Fish. Soc. , vol.131 , pp. 585-588
    • Pascual, M.1    Kinnison, M.2    Riva Rossi, C.3
  • 30
    • 84863304598 scopus 로고    scopus 로고
    • R Core Team . R Foundation for Statistical Computing, Vienna, Austria.
    • R Core Team 2012. R:a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria.
    • (2012) R:a language and environment for statistical computing
  • 31
    • 84874405689 scopus 로고    scopus 로고
    • Fine-grained adaptive divergence in an amphibian: genetic basis of phenotypic divergence and the role of nonrandom gene flow in restricting effective migration among wetlands
    • Richter-Boix, A., M. Quintela, M. Kierczak, M. Franch, and A. Laurila 2013. Fine-grained adaptive divergence in an amphibian: genetic basis of phenotypic divergence and the role of nonrandom gene flow in restricting effective migration among wetlands. Mol. Ecol. 22:1322-1340.
    • (2013) Mol. Ecol. , vol.22 , pp. 1322-1340
    • Richter-Boix, A.1    Quintela, M.2    Kierczak, M.3    Franch, M.4    Laurila, A.5
  • 32
    • 54349088278 scopus 로고    scopus 로고
    • Smoltification
    • S. D. McCormick. . Pp. - in R. N. Finn, B. G. Kapoor, eds. Science Publisher Inc. Enfiled(NH) & IBH Publishing Co. Pvt. Ltd., New Delhi, India.
    • Stefansson, S. O., B. T. Björnsson, L. O. Ebbesson, S. D. McCormick 2008. Smoltification. Pp. 639-681 in Fish larval physiology. R. N. Finn, B. G. Kapoor, eds. Science Publisher Inc. Enfiled(NH) & IBH Publishing Co. Pvt. Ltd., New Delhi, India.
    • (2008) Fish larval physiology , pp. 639-681
    • Stefansson, S.O.1    Björnsson, B.T.2    Ebbesson, L.O.3
  • 33
    • 3543031706 scopus 로고    scopus 로고
    • A comparison of genetic variation between an anadromous steelhead, Oncorhynchus mykiss, population and seven derived populations sequestered in freshwater for 70 years
    • Thrower, F., C. III Guthrie, J. Nielsen, and J. Joyce 2004a. A comparison of genetic variation between an anadromous steelhead, Oncorhynchus mykiss, population and seven derived populations sequestered in freshwater for 70 years. Environ. Biol. Fishes 69:111-125.
    • (2004) Environ. Biol. Fishes , vol.69 , pp. 111-125
    • Thrower, F.1    Guthrie III, C.2    Nielsen, J.3    Joyce, J.4
  • 34
    • 11144232128 scopus 로고    scopus 로고
    • Genetic architecture of growth and early life-history transitions in anadromous and derived freshwater populations of steelhead
    • Thrower, F. P., J. J. Hard, and J. E. Joyce 2004b. Genetic architecture of growth and early life-history transitions in anadromous and derived freshwater populations of steelhead. J. Fish Biol. 65:286-307.
    • (2004) J. Fish Biol. , vol.65 , pp. 286-307
    • Thrower, F.P.1    Hard, J.J.2    Joyce, J.E.3
  • 35
    • 55849133422 scopus 로고    scopus 로고
    • Efficient methods to compute genomic predictions
    • VanRaden, P. 2008. Efficient methods to compute genomic predictions. J. Dairy Sci. 91:4414-4423.
    • (2008) J. Dairy Sci. , vol.91 , pp. 4414-4423
    • VanRaden, P.1
  • 38
    • 0034486489 scopus 로고    scopus 로고
    • Population structure of sympatric anadromous and nonanadromous Oncorhynchus mykiss: evidence from spawning surveys and otolith microchemistry
    • Zimmerman, C. E., and G. H. Reeves 2000. Population structure of sympatric anadromous and nonanadromous Oncorhynchus mykiss: evidence from spawning surveys and otolith microchemistry. Can. J. Fish. Aquat. Sci. 57:2152-2162.
    • (2000) Can. J. Fish. Aquat. Sci. , vol.57 , pp. 2152-2162
    • Zimmerman, C.E.1    Reeves, G.H.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.