Isobutanol production from cellobiose in Escherichia coli

Applied Microbiology and Biotechnology

Volumn 98, Issue 8, 2014, Pages 3727-3736

  Desai, Shuchi H ^a   Rabinovitch Deere, Christine A ^a   Tashiro, Yohei ^a   Atsumi, Shota ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Biofuel; Cellobiose; Isobutanol; Metabolic engineering

Indexed keywords

CELL MEMBRANES; CYTOLOGY; ESCHERICHIA COLI; GENES; METABOLIC ENGINEERING; PHYSIOLOGY; PRODUCTIVITY; STRAIN;

BIOFUEL PRODUCTION; CELLOBIOSE; CELLULOSIC BIOFUELS; CONSOLIDATED BIO-PROCESSING; ISOBUTANOL; LIGNO-CELLULOSICS; SOLE CARBON SOURCE; STRAIN DEVELOPMENT;

BIOFUELS;

2,3 BUTANEDIOL; BETA GLUCOSIDASE; BIOFUEL; CELLOBIOSE; GENOMIC DNA; GLUCOSE; ISOBUTANOL; POLYNUCLEOTIDE 5' HYDROXYL KINASE; BACTERIAL DNA; BUTANOL;

ALCOHOL PRODUCTION; ARTICLE; BACTERIAL GROWTH; BIOFUEL PRODUCTION; CARBON SOURCE; CELL GROWTH; CELL MEMBRANE; CONTROLLED STUDY; DNA REPLICATION ORIGIN; ENZYME ACTIVITY; ENZYME DEGRADATION; ENZYME RELEASE; ESCHERICHIA COLI; FUSION GENE; GLUCOSE INTAKE; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; METABOLIC ENGINEERING; NONHUMAN; NUCLEOTIDE SEQUENCE; OUTER MEMBRANE; PROTEIN EXPRESSION; BIOTRANSFORMATION; CHEMISTRY; DNA SEQUENCE; GENE EXPRESSION; GENETICS; METABOLISM; MOLECULAR GENETICS;

BETA-GLUCOSIDASE; BIOTRANSFORMATION; BUTANOLS; CELLOBIOSE; DNA, BACTERIAL; ESCHERICHIA COLI; GENE EXPRESSION; METABOLIC ENGINEERING; MOLECULAR SEQUENCE DATA; SEQUENCE ANALYSIS, DNA;

EID: 84898883860     PISSN: 01757598     EISSN: 14320614     Source Type: Journal    
DOI: 10.1007/s00253-013-5504-7     Document Type: Article

References (54)

1. Atsumi S, Hanai T, Liao JC (2008) Non-fermentative pathways for synthesis of branched-chain higher alcohols as biofuels. Nature 451(7174):86-89. doi: 10.1038/nature06450
2. Atsumi S, Li Z, Liao JC (2009) Acetolactate synthase from Bacillus subtilis serves as a 2-ketoisovalerate decarboxylase for isobutanol biosynthesis in Escherichia coli. Appl Environ Microbiol 75(19):6306-6311. doi: 10.1128/AEM.01160-09
3. Bishop RE (2000) The bacterial lipocalins. Biochim Biophys Acta 1482(1-2):73-83
4. Bishop RE, Penfold SS, Frost LS, Holtje JV, Weiner JH (1995) Stationary phase expression of a novel Escherichia coli outer membrane lipoprotein and its relationship with mammalian apolipoprotein D. Implications for the origin of lipocalins. J Biol Chem 270(39):23097-23103
5. Blanch HW (2012) Bioprocessing for biofuels. Curr Opin Biotechnol 23(3):390-395. doi: 10.1016/j.copbio.2011.10.002
6. Blanch HW, Simmons BA, Klein-Marcuschamer D (2011) Biomass deconstruction to sugars. Biotech J 6(9):1086-1102. doi: 10.1002/biot.201000180
7. Bokinsky G, Peralta-Yahya PP, George A, Holmes BM, Steen EJ, Dietrich J, Lee TS, Tullman-Ercek D, Voigt CA, Simmons BA, Keasling JD (2011) Synthesis of three advanced biofuels from ionic liquid-pretreated switchgrass using engineered Escherichia coli. Proc Natl Acad Sci U S A 108(50):19949-19954. doi: 10.1073/pnas.1106958108
8. Cairns JRK, Esen A (2010) beta-Glucosidases. Cell Mol Life Sci 67(20):3389-3405. doi: 10.1007/s00018-010-0399-2
9. Geddes CC, Nieves IU, Ingram LO (2011) Advances in ethanol production. Curr Opin Biotechnol 22(3):312-319. doi: 10.1016/j.copbio.2011.04.012
10. Goyal G, Tsai SL, Madan B, DaSilva NA, Chen W (2011) Simultaneous cell growth and ethanol production from cellulose by an engineered yeast consortium displaying a functional mini-cellulosome. Microbiol Cell Fact 10:89. doi: 10.1186/1475-2859-10-89
11. Gupta S, Adlakha N, Yazdani SS (2012) Efficient extracellular secretion of an endoglucanase and a beta-glucosidase in E. Coli. Protein Expr Purif 88(1):20-25. doi: 10.1016/j.pep.2012.11.006
12. Hahn-Hagerdal B, Galbe M, Gorwa-Grauslund MF, Liden G, Zacchi G (2006) Bio-ethanol - the fuel of tomorrow from the residues of today. Trends Biotechnol 24(12):549-556. doi: 10.1016/j.tibtech.2006.10.004
13. Higashide W, Li Y, Yang Y, Liao JC (2011) Metabolic engineering of Clostridium cellulolyticum for production of isobutanol from cellulose. Appl Environ Microbiol 77(8):2727-2733. doi: 10.1128/AEM.02454-10
14. Horton RM, Hunt HD, Ho SN, Pullen JK, Pease LR (1989) Engineering hybrid genes without the use of restriction enzymes: gene splicing by overlap extension. Gene 77(1):61-68
15. Kotzsch A, Vernet E, Hammarstrom M, Berthelsen J, Weigelt J, Graslund S, Sundstrom M (2011) A secretory system for bacterial production of high-profile protein targets. Protein Sci 20(3):597-609. doi: 10.1002/pro.593
16. Kumar R, Singh S, Singh OV (2008) Bioconversion of lignocellulosic biomass: biochemical and molecular perspectives. J Ind Microbiol Biotechnol 35(5):377-391. doi: 10.1007/s10295-008-0327-8
17. Lamsen EN, Atsumi S (2012) Recent progress in synthetic biology for microbial production of C3-C10 alcohols. Front Microbiol 3:196. doi: 10.3389/fmicb.2012.00196
18. Lee JW, Na D, Park JM, Lee J, Choi S, Lee SY (2012) Systems metabolic engineering of microorganisms for natural and non-natural chemicals. Nat Chem Biol 8(6):536-546. doi: 10.1038/nchembio.970
19. Li MZ, Elledge SJ (2007) Harnessing homologous recombination in vitro to generate recombinant DNA via SLIC. Nat Methods 4(3):251-256. doi: 10.1038/nmeth1010
20. Luo D, Hu Z, Choi DG, Thomas VM, Realff MJ, Chance RR (2010) Life cycle energy and greenhouse gas emissions for an ethanol production process based on blue-green algae. Environ Sci Technol 44(22):8670-8677. doi: 10.1021/es1007577
21. Lutz R, Bujard H (1997) Independent and tight regulation of transcriptional units in Escherichia coli via the LacR/O, the TetR/O and AraC/I1-I2 regulatory elements. Nucleic Acids Res 25(6):1203-1210
22. Lv X, Xu H, Yu H (2013) Significantly enhanced production of isoprene by ordered coexpression of genes dxs, dxr, and idi in Escherichia coli. Appl Microbiol Biotechnol 97(6):2357-2365. doi: 10.1007/s00253-012-4485-2
23. Lynd LR, Wyman CE, Gerngross TU (1999) Biocommodity engineering. Biotechnol Prog 15(5):777-793. doi: 10.1021/bp990109e
24. Lynd LR, van Zyl WH, McBride JE, Laser M (2005) Consolidated bioprocessing of cellulosic biomass: an update. Curr Opin Biotechnol 16(5):577-583. doi: 10.1016/j.copbio.2005.08.009
25. McFarlane J, Robinson SM (2007) Survey of alternative feedstocks for commodity chemical manufacturing. Oak Ridge National Laboratory
26. Minty JJ, Singer ME, Scholz SA, Bae CH, Ahn JH, Foster CE, Liao JC, Lin XN (2013) Design and characterization of synthetic fungal-bacterial consortia for direct production of isobutanol from cellulosic biomass. Proc Natl Acad Sci U S A 110(36):14592-14597. doi: 10.1073/pnas.1218447110
27. Munoz-Gutierrez I, Martinez A (2013) Polysaccharide hydrolysis with engineered Escherichia coli for the production of biocommodities. J Ind Microbiol Biotechnol 40(5):401-410. doi: 10.1007/s10295-013-1245-y
28. Munoz-Gutierrez I, Oropeza R, Gosset G, Martinez A (2012) Cell surface display of a beta-glucosidase employing the type V secretion system on ethanologenic Escherichia coli for the fermentation of cellobiose to ethanol. J Ind Microbiol Biotechnol 39(8):1141-1152. doi: 10.1007/s10295-012-1122-0
29. Olson DG, McBride JE, Shaw AJ, Lynd LR (2012) Recent progress in consolidated bioprocessing. Curr Opin Biotechnol 23(3):396-405. doi: 10.1016/j.copbio.2011.11.026
30. Orts WJ, Holtman KM, Seiber JN (2008) Agricultural chemistry and bioenergy. J Agric Food Chem 56(11):3892-3899. doi: 10.1021/jf8006695
31. Qian ZG, Xia XX, Choi JH, Lee SY (2008) Proteome-based identification of fusion partner for high-level extracellular production of recombinant proteins in Escherichia coli. Biotechnol Bioeng 101(3):587-601. doi: 10.1002/bit.21898
32. Rabinovitch-Deere CA, Oliver JW, Rodriguez GM, Atsumi S (2013) Synthetic biology and metabolic engineering approaches to produce biofuels. Chem Rev 113(7):4611-4632. doi: 10.1021/cr300361t
33. 2 emissions. Proc Natl Acad Sci U S A 104(24):10288-10293. doi: 10.1073/pnas.0700609104
34. Riou C, Salmon JM, Vallier MJ, Gunata Z, Barre P (1998) Purification, characterization, and substrate specificity of a novel highly glucose-tolerant beta-glucosidase from Aspergillus oryzae. Appl Environ Microbiol 64(10):3607-3614
35. Rodriguez GM, Atsumi S (2012) Isobutyraldehyde production from Escherichia coli by removing aldehyde reductase activity. Microbiol Cell Fact 11:90. doi: 10.1186/1475-2859-11-90
36. Rude MA, Schirmer A (2009) New microbial fuels: a biotech perspective. Curr Opin Microbiol 12(3):274-281. doi: 10.1016/j.mib.2009.04.004
37. Ryu S, Karim MN (2011) A whole cell biocatalyst for cellulosic ethanol production from dilute acid-pretreated corn stover hydrolyzates. Appl Microbiol Biotechnol 91(3):529-542. doi: 10.1007/s00253-011-3261-z
38. Schiefner A, Chatwell L, Breustedt DA, Skerra A (2010) Structural and biochemical analyses reveal a monomeric state of the bacterial lipocalin Blc. Acta Crystallogr D 66(Pt 12):1308-1315. doi: 10.1107/S0907444910039375
39. Sekar R, Shin HD, Chen R (2012) Engineering Escherichia coli cells for cellobiose assimilation through a phosphorolytic mechanism. Appl Environ Microbiol 78(5):1611-1614. doi: 10.1128/AEM.06693-11
40. Shin HD, Yoon SH, Wu J, Rutter C, Kim SW, Chen RR (2012) High-yield production of meso-2,3-butanediol from cellodextrin by engineered E. Coli biocatalysts. Bioresour Technol 118:367-373. doi: 10.1016/j.biortech.2012.04.100
41. Silva F, Queiroz JA, Domingues FC (2012) Evaluating metabolic stress and plasmid stability in plasmid DNA production by Escherichia coli. Biotechnol Adv 30(3):691-708. doi: 10.1016/j.biotechadv.2011.12.005
42. Soma Y, Inokuma K, Tanaka T, Ogino C, Kondo A, Okamoto M, Hanai T (2012) Direct isopropanol production from cellobiose by engineered Escherichia coli using a synthetic pathway and a cell surface display system. J Biosci Bioeng 114(1):80-85. doi: 10.1016/j.jbiosc.2012.02.019
43. Spiridonov NA, Wilson DB (2001) Cloning and biochemical characterization of BglC, a beta-glucosidase from the cellulolytic actinomycete Thermobifida fusca. Curr Microbiol 42(4):295-301. doi: 10.1007/s002840110220
44. Stamm P, Verma V, Ramamoorthy R, Kumar PP (2012) Manipulation of plant architecture to enhance lignocellulosic biomass. AoB Plants 2012:pls026. doi: 10.1093/aobpla/pls026
45. Steen EJ, Kang Y, Bokinsky G, Hu Z, Schirmer A, McClure A, Del Cardayre SB, Keasling JD (2010) Microbial production of fatty-acid-derived fuels and chemicals from plant biomass. Nature 463(7280):559-562. doi: 10.1038/nature08721
46. Tanaka T, Kawabata H, Ogino C, Kondo A (2011) Creation of a cellooligosaccharide-assimilating Escherichia coli strain by displaying active beta-glucosidase on the cell surface via a novel anchor protein. Appl Environ Microbiol 77(17):6265-6270. doi: 10.1128/AEM.00459-11
47. Tanaka T, Matsumoto S, Yamada M, Yamada R, Matsuda F, Kondo A (2013) Display of active beta-glucosidase on the surface of Schizosaccharomyces pombe cells using novel anchor proteins. Appl Microbiol Biotechnol 97(10):4343-4352. doi: 10.1007/s00253-013-4733-0
48. Tsai SL, DaSilva NA, Chen W (2013) Functional display of complex cellulosomes on the yeast surface via adaptive assembly. ACS Synth Biol 2(1):14-21. doi: 10.1021/sb300047u
49. Tsukada T, Igarashi K, Yoshida M, Samejima M (2006) Molecular cloning and characterization of two intracellular beta-glucosidases belonging to glycoside hydrolase family 1 from the basidiomycete Phanerochaete chrysosporium. Appl Microbiol Biotechnol 73(4):807-814. doi: 10.1007/s00253-006-0526-z
50. Tyo KE, Ajikumar PK, Stephanopoulos G (2009) Stabilized gene duplication enables long-term selection-free heterologous pathway expression. Nat Biotechnol 27(8):760-765. doi: 10.1038/nbt.1555
51. Vinuselvi P, Lee SK (2011) Engineering Escherichia coli for efficient cellobiose utilization. Appl Microbiol Biotechnol 92(1):125-132. doi: 10.1007/s00253-011-3434-9
52. Yamada R, Hasunuma T, Kondo A (2013) Endowing non-cellulolytic microorganisms with cellulolytic activity aiming for consolidated bioprocessing. Biotechnol Adv 31(6):754-763. doi: 10.1016/j.biotechadv.2013.02.007
53. Zhang Z, Moo-Young M, Chisti Y (1996) Plasmid stability in recombinant Saccharomyces cerevisiae. Biotechnol Adv 14(4):401-435
54. Zheng Z, Chen T, Zhao M, Wang Z, Zhao X (2012) Engineering Escherichia coli for succinate production from hemicellulose via consolidated bioprocessing. Microbiol Cell Fact 11:37. doi: 10.1186/1475-2859-11-37