Comparison of diagnostic clinical samples and environmental sampling for enterovirus and parechovirus surveillance in Scotland, 2010 to 2012

Eurosurveillance

Volumn 19, Issue 15, 2014, Pages

  Harvala, H ^a,b   Calvert, J ^a   Van Nguyen, D ^a   Clasper, L ^a   Gadsby, N ^b   Molyneaux, P ^c   Templeton, K ^a,b   McWilliams Leitch, C ^a   Simmonds, P ^a,b  

^a UNIVERSITY OF EDINBURGH   (United Kingdom)

^b ROYAL INFIRMARY OF EDINBURGH   (United Kingdom)

^c ABERDEEN ROYAL INFIRMARY   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN VP1;

ADOLESCENT; ADULT; AGED; ARTICLE; CEREBROSPINAL FLUID ANALYSIS; CHILD; COXSACKIE VIRUS; DISEASE SURVEILLANCE; ENTEROVIRUS; FECES ANALYSIS; GENETIC VARIABILITY; HUMAN; HUMAN RHINOVIRUS; INFANT; PARECHOVIRUS; PRESCHOOL CHILD; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA SEQUENCE; SAMPLING; SCHOOL CHILD; SEQUENCE ALIGNMENT; SEWAGE; THROAT CULTURE; UNITED KINGDOM; WATER SAMPLING;

CENTRAL NERVOUS SYSTEM INFECTIONS; CEREBROSPINAL FLUID; ENTEROVIRUS; FECES; GREAT BRITAIN; HUMANS; PARECHOVIRUS; PHYLOGENY; PICORNAVIRIDAE INFECTIONS; PREVALENCE; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, VIRAL; SCOTLAND; SENTINEL SURVEILLANCE; SEPSIS; SEQUENCE ANALYSIS, DNA; SEROTYPING; SEWAGE; SPECIMEN HANDLING;

EID: 84898863509     PISSN: 1025496X     EISSN: 15607917     Source Type: Journal    
DOI: 10.2807/1560-7917.ES2014.19.15.20772     Document Type: Article

References (27)

1. Harvala H, McLeish N, Kondracka J, McIntyre CL, McWilliam-Leitch EC, Templeton K, et al. Comparison of human parechovirus and enterovirus detection frequencies in cerebrospinal fluid samples collected over a 5-year period in Edinburgh-HPeV type 3 identified as the most common picornavirus type. J Med Virol. 2011;839(5):889-96. http://dx.doi.org/10.1002/jmv.22023
2. Solomon T, Lewthwaite P, Perera D, Cardosa MJ, McMinn P, Ooi MH. Virology, epidemiology, pathogenesis, and control of enterovirus 71. Lancet Infect Dis. 2010:10(11);778-90. http://dx.doi.org/10.1016/S1473-3099(10)70194-8
3. Melnick JL. Enterovirus: Polioviruses, coxsackieviruses, echoviruses and newer enteroviruses. In: Fields BN, Knipe DM, Howley PM, editors. Fields Virology. Philadelphia: Lippincott-Raven Publishers; 2007.
4. Knowles NJ, Hovi T, Hyypiä T, King AM, Lindberg AM, Pallansch MA, et al. Picornaviridae. In: King AM, Adams MJ, Carstens EB, Lefkowitz EJ, editors. Virus Taxonomy: Classification and Nomenclature of Viruses. Ninth Report of the International Committee on Taxonomy of Viruses. San Diego: Elsevier; 2012. p.855-80.
5. Harvala H, Wolthers K, Simmonds P. Parechoviruses in children: understanding a new infection. Curr Opin Infect Dis. 2010;23(3):224-30. http://dx.doi.org/10.1097/QCO.0b013e32833890ca
6. Hyypiä T, Horsnell C, Maaronen M, Khan M, Kalkkinen N, Auvinen P, et al. A distinct picornavirus group identified by sequence analysis. Proc Natl Acad Sci U S A. 1992;89(18):8847-51. http://dx.doi.org/10.1073/pnas.89.18.8847
7. Oberste M, Schnurr D, Maher K, al Busaidy S, Pallansch M. Molecular identification of new picornaviruses and characterization of a proposed enterovirus 73 serotype. J Gen Virol. 2001;82(Pt 2):409-16.
8. Welch JB, McGowan K, Searle B, Gillon J, Jarvis LM, Simmonds P. Detection of enterovirus viraemia in blood donors. Vox Sang. 2001;80(4):211-5. http://dx.doi.org/10.1046/j.1423-0410.2001.00035.x
9. Dierssen U, Rehren F, Henke-Gendo C, Harste G, Heim A. Rapid routine detection of enterovirus RNA in cerebrospinal fluid by a one-step real-time RT-PCR assay. J Clin Virol. 2008;42(1):58-64. http://dx.doi.org/10.1016/j.jcv.2007.11.016
10. Bennett S, Harvala H, Witteveldt J, McWilliam Leitch EC, McLeish N, Templeton K, et al. Rapid Simultaneous Detection of Enterovirus and Parechovirus RNAs in Clinical Samples by One-Step Real-Time Reverse Transcription-PCR Assay. J Clin Microbiol. 2011;49(7):2620-4. http://dx.doi.org/10.1128/JCM.02445-10
11. Harvala H, Robertson I, McWilliam Leitch C, Chieochansin T, Templeton K, Simmonds P. Aetiological role of human parechovirus type 3 in neonatal sepsis identified by direct typing assay on cerebrospinal fluid. J Infect Dis. 2009;199(12):1753-60. http://dx.doi.org/10.1086/599094
12. McLeish N, Witteveldt J, Clasper L, McIntyre C, McWilliam Leitch EC, Hardie A, et al. Development and assay of RNA transcripts of enteroviruses species A-D, rhinovirus species A-C and human parechovirus: assessment of assay sensitivity and specificity of real-time screening and typing methods. J Clin Microbiol. 2012;50(9):2910-7. http://dx.doi.org/10.1128/JCM.01172-12
13. Symonds EM, Griffin DW, Breitbart M. Eukaryotic viruses in wastewater samples from the United States. Appl Environ Microbiol. 2009;75(5):1402-9. http://dx.doi.org/10.1128/AEM.01899-08
14. Harvala H, McIntyre CL, McLeish NJ, Kondracka J, Palmer J, Molyneaux P, et al. High detection frequency and viral loads of human rhinovirus species A to C in fecal samples; diagnostic and clinical implications. J Med Virol. 2012;84(3):536-42. http://dx.doi.org/10.1002/jmv.23203
15. Viskari HR, Koskela P, Lonnrot M, Luonuansuu S, Reunanen A, Baer M, et al. Can enterovirus infections explain the increasing incidence of type 1 diabetes? Diabetes Care. 2000;23(3):414-6. http://dx.doi.org/10.2337/diacare.23.3.414
16. Maguire HC, Atkinson P, Sharland M, Bendig J. Enterovirus infections in England and Wales: laboratory surveillance data: 1975 to 1994. Commun Dis Public Health. 1999;2(2):122-5.
17. Khetsuriani N, Lamonte-Fowlkes A, Oberste S, Pallansch MA. Enterovirus surveillance--United States, 1970-2005. MMWR Surveill Summ. 2006;55(8):1-20.
18. Osterback R, Vuorinen T, Linna M, Susi P, Hyypia T, Waris M. Coxsackievirus A6 and hand, foot, and mouth disease, Finland. Emerg Infect Dis. 2009;15(9):1485-8. http://dx.doi.org/10.3201/eid1509.090438
19. Mirand A, Henquell C, Archimbaud C, Ughetto S, Antona D, Bailly JL, et al. Outbreak of hand, foot and mouth disease/herpangina associated with coxsackievirus A6 and A10 infections in 2010, France: a large citywide, prospective observational study. Clin Microbiol Infect. 2012;18(5):E110-8. http://dx.doi.org/10.1111/j.1469-0691.2012.03789.x
20. Witso E, Palacios G, Cinek O, Stene LC, Grinde B, Janowitz D, et al. High prevalence of human enterovirus a infections in natural circulation of human enteroviruses. J Clin Microbiol. 2006;44(11):4095-100. http://dx.doi.org/10.1128/JCM.00653-06
21. Apostol LN, Imagawa T, Suzuki A, Masago Y, Lupisan S, Olveda R, et al. Genetic diversity and molecular characterization of enteroviruses from sewage-polluted urban and rural rivers in the Philippines. Virus Genes. 2012;45(2):207-17. http://dx.doi.org/10.1007/s11262-012-0776-z
22. Combelas N, Holmblat B, Joffret ML, Colbere-Garapin F, Delpeyroux F. Recombination between poliovirus and coxsackie A viruses of species C: a model of viral genetic plasticity and emergence. Viruses. 2011;3(8):1460-84. http://dx.doi.org/10.3390/v3081460
23. Sadeuh-Mba SA, Bessaud M, Massenet D, Joffret ML, Endegue MC, Njouom R, et al. Enteroviruses in Cameroon and neighbouring countries: high frequency and diversity of species C enteroviruses. J Clin Microbiol. 2012;51(3):759-70. http://dx.doi.org/10.1128/JCM.02119-12
24. Meijer A, van der Sanden S, Snijders BE, Jaramillo-Gutierrez G, Bont L, van der Ent CK, et al. Emergence and epidemic occurrence of enterovirus 68 respiratory infections in The Netherlands in 2010. Virology. 2012;423(1):49-57. http://dx.doi.org/10.1016/j.virol.2011.11.021
25. Smura TP, Junttila N, Blomqvist S, Norder H, Kaijalainen S, Paananen A, et al. Enterovirus 94, a proposed new serotype in human enterovirus species D. J Gen Virol. 2007;88(3):849-58. http://dx.doi.org/10.1099/vir.0.82510-0
26. Schuffenecker I, Javouhey E, Gillet Y, Kugener B, Billaud G, Floret D, et al. Human parechovirus infections, Lyon, France, 2008-10: evidence for severe cases. J Clin Virol. 2012;54(4):337-41. http://dx.doi.org/10.1016/j.jcv.2012.04.016
27. Wolthers KC, Benschop KS, Schinkel J, Molenkamp R, Bergevoet RM, Spijkerman IJ, et al. Human parechoviruses as an important viral cause of sepsislike illness and meningitis in young children. Clin Infect Dis. 2008;47(3):358-63. http://dx.doi.org/10.1086/589752