메뉴 건너뛰기




Volumn 30, Issue 8, 2014, Pages 1183-1184

CAGExploreR: An R package for the analysis and visualization of promoter dynamics across multiple experiments

Author keywords

[No Author keywords available]

Indexed keywords

RNA;

EID: 84898839567     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btu125     Document Type: Article
Times cited : (5)

References (10)
  • 1
    • 33744805985 scopus 로고    scopus 로고
    • Genome-wide analysis of mammalian promoter architecture and evolution
    • Carninci, P. et al. (2006) Genome-wide analysis of mammalian promoter architecture and evolution. Nat. Genet., 38, 626-635.
    • (2006) Nat. Genet. , vol.38 , pp. 626-635
    • Carninci, P.1
  • 2
    • 84865790047 scopus 로고    scopus 로고
    • An integrated encyclopedia of DNA elements in the human genome
    • ENCODE Consortium.
    • ENCODE Consortium. (2012) An integrated encyclopedia of DNA elements in the human genome. Nature, 489, 57-74.
    • (2012) Nature , vol.489 , pp. 57-74
  • 3
    • 84897406127 scopus 로고    scopus 로고
    • A promoter level mammalian expression atlas
    • Forrest, A.R.R. et al. (2014) A promoter level mammalian expression atlas. Nature, http://dx.doi.org/10.1038/nature13182.
    • (2014) Nature
    • Forrest, A.R.R.1
  • 4
    • 78651321213 scopus 로고    scopus 로고
    • MPromDb update 2010: An integrated resource for annotation and visualization of mammalian gene promoters and ChIP-seq experimental data
    • Gupta, R. et al. (2011) MPromDb update 2010: an integrated resource for annotation and visualization of mammalian gene promoters and ChIP-seq experimental data. Nucleic Acids Res., 39, D92-D97.
    • (2011) Nucleic Acids Res. , vol.39
    • Gupta, R.1
  • 5
    • 80051567157 scopus 로고    scopus 로고
    • Alternative transcription exceeds alternative splicing in generating the transcriptome diversity of cerebellar development
    • Pal, S. et al. (2011) Alternative transcription exceeds alternative splicing in generating the transcriptome diversity of cerebellar development. Genome Res., 21, 1260-1272.
    • (2011) Genome Res. , vol.21 , pp. 1260-1272
    • Pal, S.1
  • 6
    • 77954738647 scopus 로고    scopus 로고
    • Linking promoters to functional transcripts in small samples with nanoCAGE and CAGEscan
    • Plessy, C. et al. (2010) Linking promoters to functional transcripts in small samples with nanoCAGE and CAGEscan. Nat. Methods, 7, 528-534.
    • (2010) Nat. Methods , vol.7 , pp. 528-534
    • Plessy, C.1
  • 7
    • 75249087100 scopus 로고    scopus 로고
    • EdgeR: A Bioconductor package for differential expression analysis of digital gene expression data
    • Robinson, M.D. et al. (2010) edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics, 26, 139-140.
    • (2010) Bioinformatics , vol.26 , pp. 139-140
    • Robinson, M.D.1
  • 8
    • 85055761396 scopus 로고
    • On the estimation of relationships involving qualitative variables
    • Theil, H. (1970) On the estimation of relationships involving qualitative variables. Am. J. Sociol., 76, 103-154.
    • (1970) Am. J. Sociol. , vol.76 , pp. 103-154
    • Theil, H.1
  • 9
    • 80053970951 scopus 로고    scopus 로고
    • Tumor-specific usage of alternative transcription start sites in colorectal cancer identified by genome-wide exon array analysis
    • Thorsen, K. et al. (2011) Tumor-specific usage of alternative transcription start sites in colorectal cancer identified by genome-wide exon array analysis. BMC Genomics, 12, 505.
    • (2011) BMC Genomics , vol.12 , pp. 505
    • Thorsen, K.1
  • 10
    • 77952123055 scopus 로고    scopus 로고
    • Transcript assembly and quantification by RNA-seq reveals unannotated transcripts and isoform switching during cell differentiation
    • Trapnell, C. et al. (2010) Transcript assembly and quantification by RNA-seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat. Biotechnol., 28, 511-515.
    • (2010) Nat. Biotechnol. , vol.28 , pp. 511-515
    • Trapnell, C.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.