메뉴 건너뛰기




Volumn 5, Issue , 2014, Pages

Forensic genomics as a novel tool for identifying the causes of mass mortality events

Author keywords

[No Author keywords available]

Indexed keywords

ANATOXIN A; AZASPIRACID; DOMOIC ACID; LYNGBYATOXIN; MICROCYSTIN; OKADAIC ACID; SAXITOXIN; YESSOTOXIN; OXOCIN DERIVATIVE;

EID: 84898786920     PISSN: None     EISSN: 20411723     Source Type: Journal    
DOI: 10.1038/ncomms4652     Document Type: Article
Times cited : (47)

References (49)
  • 1
    • 34548792911 scopus 로고    scopus 로고
    • Marine viruses - Major players in the global ecosystem
    • DOI 10.1038/nrmicro1750, PII NRMICRO1750
    • Suttle, C. A. Marine viruses-major players in the global ecosystem. Nat. Rev. Microbiol. 5, 801-812 (2007). (Pubitemid 47423768)
    • (2007) Nature Reviews Microbiology , vol.5 , Issue.10 , pp. 801-812
    • Suttle, C.A.1
  • 5
    • 64949203781 scopus 로고    scopus 로고
    • Mass mortality in Northwestern Mediterranean rocky benthic communities: Effects of the 2003 heat wave
    • Garrabou, J. et al. Mass mortality in Northwestern Mediterranean rocky benthic communities: effects of the 2003 heat wave. Glob. Change Biol. 15, 1090-1103 (2009).
    • (2009) Glob. Change Biol. , vol.15 , pp. 1090-1103
    • Garrabou, J.1
  • 7
    • 77958593142 scopus 로고    scopus 로고
    • Evidence for a novel marine harmful algal bloom: Cyanotoxin (microcystin) transfer from land to sea otters
    • Miller, M. A. et al. Evidence for a novel marine harmful algal bloom: Cyanotoxin (microcystin) transfer from land to sea otters. PLoS ONE 5, e12576 (2010).
    • (2010) PLoS ONE , vol.5
    • Miller, M.A.1
  • 8
    • 49649095625 scopus 로고    scopus 로고
    • Spreading dead zones and consequences for marine ecosystems
    • Diaz, R. J. & Rosenberg, R. Spreading dead zones and consequences for marine ecosystems. Science 321, 926-929 (2008).
    • (2008) Science , vol.321 , pp. 926-929
    • Diaz, R.J.1    Rosenberg, R.2
  • 9
    • 12344267999 scopus 로고    scopus 로고
    • Functional assays in marine biotoxin detection
    • DOI 10.1016/j.tox.2004.10.012, PII S0300483X04005955
    • Rossini, G. P. Functional assays in marine biotoxin detection. Toxicology 207, 451-462 (2005). (Pubitemid 40138941)
    • (2005) Toxicology , vol.207 , Issue.3 , pp. 451-462
    • Rossini, G.P.1
  • 10
    • 0034108055 scopus 로고    scopus 로고
    • Marine algal toxins: Origins, health effects, and their increased occurrence
    • Van Dolah, F. M. Marine algal toxins: Origins, health effects, and their increased occurrence. Environ. Health Perspect. 108, 133-141 (2000). (Pubitemid 30168701)
    • (2000) Environmental Health Perspectives , vol.108 , Issue.SUPPL. 1 , pp. 133-141
    • Van Dolah, F.M.1
  • 11
    • 79251610474 scopus 로고    scopus 로고
    • Results of a European interlaboratory method validation study for the quantitative determination of lipophilic marine biotoxins in raw and cooked shellfish based on high-performance liquid chromatography-tandem mass spectrometry. Part I: Collaborative study
    • These, A., Klemm, C., Nausch, I. & Uhlig, S. Results of a European interlaboratory method validation study for the quantitative determination of lipophilic marine biotoxins in raw and cooked shellfish based on high-performance liquid chromatography-tandem mass spectrometry. Part I: collaborative study. Anal. Bioanal. Chem. 399, 1245-1256 (2011).
    • (2011) Anal. Bioanal. Chem. , vol.399 , pp. 1245-1256
    • These, A.1    Klemm, C.2    Nausch, I.3    Uhlig, S.4
  • 12
    • 79951750950 scopus 로고    scopus 로고
    • Comparison of FST outlier tests for SNP loci under selection
    • Narum, S. R. & Hess, J. E. Comparison of FST outlier tests for SNP loci under selection. Mol. Ecol. Resou. 11, 184-194 (2011).
    • (2011) Mol. Ecol. Resou. , vol.11 , pp. 184-194
    • Narum, S.R.1    Hess, J.E.2
  • 13
    • 77952475321 scopus 로고    scopus 로고
    • Targets and effects of yessotoxin okadaic acid and palytoxin: A differential review
    • Franchini, A., Malagoli, D. & Ottaviani, E. Targets and Effects of Yessotoxin, Okadaic Acid and Palytoxin: A Differential Review. Mar. Drugs 8, 658-677 (2010).
    • (2010) Mar. Drugs , vol.8 , pp. 658-677
    • Franchini, A.1    Malagoli, D.2    Ottaviani, E.3
  • 14
    • 1942424786 scopus 로고    scopus 로고
    • Selective disruption of the E-cadherin-catenin system by an algal toxin
    • DOI 10.1038/sj.bjc.6601640
    • Ronzitti, G., Callegari, F., Malaguti, C. & Rossini, G. P. Selective disruption of the E-cadherin-catenin system by an algal toxin. Br. J. Cancer 90, 1100-1107 (2004). (Pubitemid 38495834)
    • (2004) British Journal of Cancer , vol.90 , Issue.5 , pp. 1100-1107
    • Ronzitti, G.1    Callegari, F.2    Malaguti, C.3    Rossini, G.P.4
  • 15
    • 84891914471 scopus 로고    scopus 로고
    • Dinoflagellate bloom coincides with marine invertebrate mortalities in northern California
    • Rogers-Bennett, L. et al. Dinoflagellate bloom coincides with marine invertebrate mortalities in northern California. Harmful Algae News 46, 10-11 (2012).
    • (2012) Harmful Algae News , vol.46 , pp. 10-11
    • Rogers-Bennett, L.1
  • 16
    • 33845196954 scopus 로고    scopus 로고
    • Cleavage of tensin during cytoskeleton disruption in YTX-induced apoptosis
    • DOI 10.1016/j.tiv.2006.07.012, PII S0887233306001585
    • Korsnes, M. S., Hetland, D. L., Espenes, A. & Aune, T. Cleavage of tensin during cytoskeleton disruption in YTX-induced apoptosis. Toxicol. In Vitro 21, 9-15 (2007). (Pubitemid 44855507)
    • (2007) Toxicology in Vitro , vol.21 , Issue.1 , pp. 9-15
    • Korsnes, M.S.1    Hetland, D.L.2    Espenes, A.3    Aune, T.4
  • 17
    • 38749087936 scopus 로고    scopus 로고
    • Yessotoxin inhibits the complete degradation of E-cadherin
    • Callegari, F. & Rossini, G. P. Yessotoxin inhibits the complete degradation of E-cadherin. Toxicology 244, 133-144 (2008).
    • (2008) Toxicology , vol.244 , pp. 133-144
    • Callegari, F.1    Rossini, G.P.2
  • 18
    • 0036690406 scopus 로고    scopus 로고
    • Caspase activation and death induced by yessotoxin in HeLa cells
    • DOI 10.1016/S0887-2333(02)00021-8, PII S0887233302000218
    • Malaguti, C., Ciminiello, P., Fattorusso, E. & Rossini, G. P. Caspase activation and death induced by yessotoxin in HeLa cells. Toxicol. In Vitro 16, 357-363 (2002). (Pubitemid 34756427)
    • (2002) Toxicology in Vitro , vol.16 , Issue.4 , pp. 357-363
    • Malaguti, C.1    Ciminiello, P.2    Fattorusso, E.3    Rossini, G.P.4
  • 19
    • 33749859921 scopus 로고    scopus 로고
    • Induction of apoptosis by YTX in myoblast cell lines via mitochondrial signalling transduction pathway
    • DOI 10.1016/j.tiv.2006.06.015, PII S0887233306001317
    • Korsnes, M. S., Hetland, D. L., Espenes, A. & Aune, T. Induction of apoptosis by YTX in myoblast cell lines via mitochondrial signalling transduction pathway. Toxicol. In Vitro 20, 1419-1426 (2006). (Pubitemid 44559734)
    • (2006) Toxicology in Vitro , vol.20 , Issue.8 , pp. 1419-1426
    • Korsnes, M.S.1    Hetland, D.L.2    Espenes, A.3    Aune, T.4
  • 20
    • 79956368547 scopus 로고    scopus 로고
    • Yessotoxin as an apoptotic inducer
    • Korsnes, M. S. & Espenes, A. Yessotoxin as an apoptotic inducer. Toxicon 57, 947-958 (2011).
    • (2011) Toxicon , vol.57 , pp. 947-958
    • Korsnes, M.S.1    Espenes, A.2
  • 22
    • 33748300798 scopus 로고    scopus 로고
    • Algal toxin yessotoxin signalling pathways involve immunocyte mussel calcium channels
    • DOI 10.1016/j.cellbi.2006.05.003, PII S1065699506001120
    • Malagoli, D., Casarini, L. & Ottaviani, E. Algal toxin yessotoxin signalling pathways involve immunocyte mussel calcium channels. Cell. Biol. Int. 30, 721-726 (2006). (Pubitemid 44331629)
    • (2006) Cell Biology International , vol.30 , Issue.9 , pp. 721-726
    • Malagoli, D.1    Casarini, L.2    Ottaviani, E.3
  • 23
    • 0031394513 scopus 로고    scopus 로고
    • Toxicologic evaluation of yessotoxin
    • DOI 10.1002/(SICI)1522-7189(1997) 5:6<255::AID-NT6>3.0.CO;2-P
    • Ogino, H., Kumagai, M. & Yasumoto, T. Toxicologic evaluation of Yessotoxin. Nat. Toxins 5, 255-259 (1997). (Pubitemid 28257016)
    • (1997) Natural Toxins , vol.5 , Issue.6 , pp. 255-259
    • Ogino, H.1    Kumagai, M.2    Yasumoto, T.3
  • 24
    • 77953285571 scopus 로고    scopus 로고
    • Yessotoxins: A toxicological overview
    • Tubaro, A., Dell'Ovo, V., Sosa, S. & Florio, C. Yessotoxins: A toxicological overview. Toxicon 56, 163-172 (2010).
    • (2010) Toxicon , vol.56 , pp. 163-172
    • Tubaro, A.1    Dell'Ovo, V.2    Sosa, S.3    Florio, C.4
  • 25
    • 84878425593 scopus 로고    scopus 로고
    • Transcriptome-wide polymorphisms of Red Abalone (Haliotis rufescens) reveal patterns of gene flow and local adaptation
    • De Wit, P. & Palumbi, S. R. Transcriptome-wide polymorphisms of Red Abalone (Haliotis rufescens) reveal patterns of gene flow and local adaptation. Mol. Ecol. 22, 2884-2897 (2012).
    • (2012) Mol. Ecol. , vol.22 , pp. 2884-2897
    • De Wit, P.1    Palumbi, S.R.2
  • 26
    • 84855345098 scopus 로고    scopus 로고
    • Role of Hypoxia-Inducible Factor a in response to hypoxia and heat shock in the Pacific oyster Crassostrea gigas
    • Kawabe, S. & Yokoyama, Y. Role of Hypoxia-Inducible Factor a in response to hypoxia and heat shock in the Pacific oyster Crassostrea gigas. Mar. Biotechnol. 14, 106-119 (2012).
    • (2012) Mar. Biotechnol. , vol.14 , pp. 106-119
    • Kawabe, S.1    Yokoyama, Y.2
  • 28
    • 84872855352 scopus 로고    scopus 로고
    • Genomic basis for coral resilience to climate change
    • Barshis, D. J. et al. Genomic basis for coral resilience to climate change. Proc. Natl Acad. Sci. USA 110, 1387-1392 (2013).
    • (2013) Proc. Natl Acad. Sci. USA , vol.110 , pp. 1387-1392
    • Barshis, D.J.1
  • 29
    • 84876835091 scopus 로고    scopus 로고
    • Evolutionary change during experimental ocean acidification
    • Pespeni, M. H. et al. Evolutionary change during experimental ocean acidification. Proc. Natl Acad. Sci. USA 110, 6937-6942 (2013).
    • (2013) Proc. Natl Acad. Sci. USA , vol.110 , pp. 6937-6942
    • Pespeni, M.H.1
  • 30
    • 84867911144 scopus 로고    scopus 로고
    • Glutathione S-transferase (GST) genes in the red flour beetle Tribolium castaneum, and comparative analysis with five additional insects
    • Shi, H. X. et al. Glutathione S-transferase (GST) genes in the red flour beetle, Tribolium castaneum, and comparative analysis with five additional insects. Genomics 100, 327-335 (2012).
    • (2012) Genomics , vol.100 , pp. 327-335
    • Shi, H.X.1
  • 31
    • 33645893482 scopus 로고    scopus 로고
    • Genetic structure of black abalone (Haliotis cracherodii) populations in the California islands and central California coast: Impacts of larval dispersal and decimation from withering syndrome
    • Chambers, M. D., VanBlaricom, G. R., Hauser, L., Utter, F. & Friedman, C. S. Genetic structure of black abalone (Haliotis cracherodii) populations in the California islands and central California coast: Impacts of larval dispersal and decimation from withering syndrome. J. Exp. Mar. Bio. Ecol. 331, 173-185 (2006).
    • (2006) J. Exp. Mar. Bio. Ecol. , pp. 331
    • Chambers, M.D.1    Vanblaricom, G.R.2    Hauser, L.3    Utter, F.4    Friedman, C.S.5
  • 33
    • 45849139672 scopus 로고    scopus 로고
    • Yessotoxin detected in mussel (Mytilus californicus) and phytoplankton samples from the US west coast
    • Howard, M. D. A., Silver, M. & Kudela, R. M. Yessotoxin detected in mussel (Mytilus californicus) and phytoplankton samples from the US west coast. Harmful Algae 7, 646-652 (2008).
    • (2008) Harmful Algae , vol.7 , pp. 646-652
    • Howard, M.D.A.1    Silver, M.2    Kudela, R.M.3
  • 35
    • 34548395446 scopus 로고    scopus 로고
    • On the utility of linkage disequilibrium as a statistic for identifying targets of positive selection in nonequilibrium populations
    • DOI 10.1534/genetics.106.069450
    • Jensen, J. D., Thornton, K. R., Bustamante, C. D. & Aquadro, C. F. On the utility of linkage disequilibrium as a statistic for identifying targets of positive selection in nonequilibrium populations. Genetics 176, 2371-2379 (2007). (Pubitemid 47360666)
    • (2007) Genetics , vol.176 , Issue.4 , pp. 2371-2379
    • Jensen, J.D.1    Thornton, K.R.2    Bustamante, C.D.3    Aquadro, C.F.4
  • 36
    • 3843073210 scopus 로고    scopus 로고
    • Linkage disequilibrium as a signature of selective sweeps
    • DOI 10.1534/genetics.103.025387
    • Kim, Y. & Nielsen, R. Linkage disequilibrium as a signature of selective sweeps. Genetics 167, 1513-1524 (2004). (Pubitemid 39045653)
    • (2004) Genetics , vol.167 , Issue.3 , pp. 1513-1524
    • Kim, Y.1    Neilsen, R.2
  • 37
    • 84877834696 scopus 로고    scopus 로고
    • Detecting loci under recent positive selection in dairy and beef cattle by combining different genome-wide scan methods
    • Utsunomiya, Y. T. et al. Detecting Loci under Recent Positive Selection in Dairy and Beef Cattle by Combining Different Genome-Wide Scan Methods. PLoS ONE 8, e64280 (2013).
    • (2013) PLoS ONE , vol.8
    • Utsunomiya, Y.T.1
  • 38
    • 84866309967 scopus 로고    scopus 로고
    • Sampling for Microsatellite-Based Population Genetic Studies: 25 to 30 Individuals per Population Is Enough to Accurately Estimate Allele Frequencies
    • Hale, M. L., Burg, T. M. & Steeves, T. E. Sampling for Microsatellite-Based Population Genetic Studies: 25 to 30 Individuals per Population Is Enough to Accurately Estimate Allele Frequencies. PLoS ONE 7, e45170 (2012).
    • (2012) PLoS ONE , vol.7
    • Hale, M.L.1    Burg, T.M.2    Steeves, T.E.3
  • 39
    • 0037087024 scopus 로고    scopus 로고
    • Liquid chromatography with electrospray ion trap mass spectrometry for the determination of five azaspiracids in shellfish
    • DOI 10.1016/S0021-9673(02)00003-1, PII S0021967302000031
    • Lehane, M., Braña-Magdalena, A., Moroney, C., Furey, A. & James, K. Liquid chromatography with electrospray ion trap mass spectrometry for the determination of five azaspiracids in shellfish. J. Chromatogr. A 950, 139-147 (2002). (Pubitemid 34188552)
    • (2002) Journal of Chromatography A , vol.950 , Issue.1-2 , pp. 139-147
    • Lehane, M.1    Brana-Magdalena, A.2    Moroney, C.3    Furey, A.4    James, K.J.5
  • 40
    • 77958593142 scopus 로고    scopus 로고
    • Evidence for a novel marine harmful algal bloom: Cyanotoxin (microcystin) transfer from land to sea otters
    • Miller, M. A. et al. Evidence for a novel marine harmful algal bloom: Cyanotoxin (microcystin) transfer from land to sea otters. PLoS ONE 5, e12576 (2010).
    • (2010) PLoS ONE , vol.5
    • Miller, M.A.1
  • 41
    • 34249783438 scopus 로고    scopus 로고
    • Yessotoxins profile in strains of Protoceratium reticulatum from Spain and USA
    • DOI 10.1016/j.toxicon.2007.02.005, PII S0041010107000669
    • Paz, B., Riobo, P., Ramilo, I. & Franco, J. M. Yessotoxins profile in strains of Prorocentrum reticulatum from Spain and USA. Toxicon 50, 1-17 (2007). (Pubitemid 46844872)
    • (2007) Toxicon , vol.50 , Issue.1 , pp. 1-17
    • Paz, B.1    Riobo, P.2    Ramilo, I.3    Franco, J.M.4
  • 42
    • 65249160255 scopus 로고    scopus 로고
    • Sensitive method for the determination of lipophilic marine biotoxins in extracts of mussels and processed shellfish by high-performance liquid chromatography-tandem mass spectrometry based on enrichment by solid-phase extraction
    • These, A., Scholz, J. & Preiss-Wiegert, A. Sensitive method for the determination of lipophilic marine biotoxins in extracts of mussels and processed shellfish by high-performance liquid chromatography-tandem mass spectrometry based on enrichment by solid-phase extraction. J. Chromatogr. A 1216, 4529-4538 (2009).
    • (2009) J. Chromatogr. A , vol.1216 , pp. 4529-4538
    • These, A.1    Scholz, J.2    Preiss-Wiegert, A.3
  • 43
    • 84867503105 scopus 로고    scopus 로고
    • The simple fool's guide to population genomics via RNA-Seq: An introduction to high-throughput sequencing data analysis
    • De Wit, P. et al. The simple fool's guide to population genomics via RNA-Seq: an introduction to high-throughput sequencing data analysis. Mol. Ecol. Resour. 12, 1058-1067 (2012).
    • (2012) Mol. Ecol. Resour. , vol.12 , pp. 1058-1067
    • De Wit, P.1
  • 44
    • 67649884743 scopus 로고    scopus 로고
    • And accurate short read alignment with Burrows-Wheeler Transform
    • Li, H. & Durbin, R. Fast and accurate short read alignment with Burrows-Wheeler Transform. Bioinformatics 25, 1754-1760 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Fast, D.R.2
  • 45
    • 77956295988 scopus 로고    scopus 로고
    • The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
    • McKenna, A. et al. The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res. 20, 1297-1303 (2010).
    • (2010) Genome Res. , vol.20 , pp. 1297-1303
    • McKenna, A.1
  • 46
    • 49649129741 scopus 로고    scopus 로고
    • LOSITAN: A workbench to detect molecular adaptation based on a Fst-outlier method
    • Antao, T., Lopes, A., Lopes, R. J., Beja-Pereira, A. & Luikart, G. LOSITAN: A workbench to detect molecular adaptation based on a Fst-outlier method. BMC Bioinformatics 9, 323 (2008).
    • (2008) BMC Bioinformatics , vol.9 , pp. 323
    • Antao, T.1    Lopes, A.2    Lopes, R.J.3    Beja-Pereira, A.4    Luikart, G.5
  • 47
    • 23144455729 scopus 로고    scopus 로고
    • OrfPredictor: Predicting protein-coding regions in EST-derived sequences
    • DOI 10.1093/nar/gki394
    • Min, X. J., Butler, G., Storms, R. & Tsang, A. OrfPredictor: predicting proteincoding regions in EST-derived sequences. Nucleic Acids Res. 33(suppl 2): W677-W680 (2005). (Pubitemid 44530008)
    • (2005) Nucleic Acids Research , vol.33 , Issue.WEB. SERV. ISSUE
    • Min, X.J.1    Butler, G.2    Storms, R.3    Tsang, A.4
  • 48
    • 27944474776 scopus 로고    scopus 로고
    • ErmineJ: Tool for functional analysis of gene expression data sets
    • Lee, H. K., Braynen, W., Keshav, K. & Pavlidis, P. ErmineJ: tool for functional analysis of gene expression data sets. BMC Bioinformatics 6, 269 (2005).
    • (2005) BMC Bioinformatics , vol.6 , pp. 269
    • Lee, H.K.1    Braynen, W.2    Keshav, K.3    Pavlidis, P.4
  • 49
    • 79960610118 scopus 로고    scopus 로고
    • REVIGO summarizes and visualizes long lists of gene ontology terms
    • Supek, F., Bos?njak, M., S?kunca, N. & S?muc, T. REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms. PLoS ONE 6, e21800 (2011).
    • (2011) PLoS ONE , vol.6
    • Supek, F.1    Bosnjak, M.2    Skunca, N.3    Smuc, T.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.