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Volumn 9, Issue 3, 2014, Pages

ColonyArea: An ImageJ plugin to automatically quantify colony formation in clonogenic assays

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; ARTICLE; CANCER CELL CULTURE; CELL ASSAY; CELL COUNT; CELL DENSITY; CELL GROWTH; CELL SIZE; CLONOGENIC ASSAY; COLONY FORMATION; COLONYAREA ASSAY; CONTROLLED STUDY; GLIOBLASTOMA; HUMAN; HUMAN CELL; IMAGE PROCESSING; INTERMETHOD COMPARISON; PROCESS DEVELOPMENT; PROCESS OPTIMIZATION; QUANTITATIVE ANALYSIS; VALIDATION PROCESS;

EID: 84898621979     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0092444     Document Type: Article
Times cited : (483)

References (26)
  • 1
    • 84960962997 scopus 로고
    • Action of x-rays on mammalian cells
    • Puck TT, Marcus PI (1956) Action of x-rays on mammalian cells. J Exp Med 103: 653-666.
    • (1956) J Exp Med , vol.103 , pp. 653-666
    • Puck, T.T.1    Marcus, P.I.2
  • 2
    • 4043178290 scopus 로고    scopus 로고
    • Automated counting of mammalian cell colonies by means of a flat bed scanner and image processing
    • Dahle J, Kakar M, Steen HB, Kaalhus O (2004) Automated counting of mammalian cell colonies by means of a flat bed scanner and image processing. Cytometry A 60: 182-188. doi:10.1002/cyto.a.20038. (Pubitemid 39079511)
    • (2004) Cytometry Part A , vol.60 , Issue.2 , pp. 182-188
    • Dahle, J.1    Kakar, M.2    Steen, H.B.3    Kaalhus, O.4
  • 4
    • 80455178765 scopus 로고    scopus 로고
    • Optimized digital counting colonies of clonogenic assays using ImageJ software and customized macros: Comparison with manual counting
    • doi:10.3109/09553002.2011.622033
    • Cai Z, Chattopadhyay N, Liu WJ, Chan C, Pignol J-P, et al. (2011) Optimized digital counting colonies of clonogenic assays using ImageJ software and customized macros: comparison with manual counting. Int J Radiat Biol 87: 1135-1146. doi:10.3109/09553002.2011.622033.
    • (2011) Int J Radiat Biol , vol.87 , pp. 1135-1146
    • Cai, Z.1    Chattopadhyay, N.2    Liu, W.J.3    Chan, C.4    Pignol, J.-P.5
  • 5
    • 84898664619 scopus 로고    scopus 로고
    • Cellular Assays of Oncogene
    • Celis JE, editor. Four-Volume Set, Third Edition: A Laboratory Handbook. Burlington, MA, USA: Elsevier Academic Press
    • Booden MA, Ulku AS (2005) Cellular Assays of Oncogene. In: Celis JE, editor. Cell Biology, Four-Volume Set, Third Edition: A Laboratory Handbook. Burlington, MA, USA: Elsevier Academic Press, Vol. 3. pp. 345-352.
    • (2005) Cell Biology , vol.3 , pp. 345-352
    • Booden, M.A.1    Ulku, A.S.2
  • 6
    • 79952263402 scopus 로고    scopus 로고
    • Compartmentalized Ras proteins transform NIH 3T3 cells with different efficiencies
    • doi:10.1128/MCB.00137-10
    • Cheng C-M, Li H, Gasman S, Huang J, Schiff R, et al. (2011) Compartmentalized Ras proteins transform NIH 3T3 cells with different efficiencies. Mol Cell Biol 31: 983-997. doi:10.1128/MCB.00137-10.
    • (2011) Mol Cell Biol , vol.31 , pp. 983-997
    • Cheng, C.-M.1    Li, H.2    Gasman, S.3    Huang, J.4    Schiff, R.5
  • 7
    • 84867039610 scopus 로고    scopus 로고
    • CIP2A signature reveals the MYC dependency of CIP2A-regulated phenotypes and its clinical association with breast cancer subtypes
    • doi:10.1038/onc.2011.599
    • Niemelä M, Kauko O, Sihto H, Mpindi J-P, Nicorici D, et al. (2012) CIP2A signature reveals the MYC dependency of CIP2A-regulated phenotypes and its clinical association with breast cancer subtypes. Oncogene 31: 4266-4278. doi:10.1038/onc.2011.599.
    • (2012) Oncogene , vol.31 , pp. 4266-4278
    • Niemelä, M.1    Kauko, O.2    Sihto, H.3    Mpindi, J.-P.4    Nicorici, D.5
  • 8
    • 0022880936 scopus 로고
    • Determination of Cell Number in Monolayer-Cultures
    • Gillies RJ, Didier N, Denton M (1986) Determination of Cell Number in Monolayer-Cultures. Anal Biochem 159: 109-113.
    • (1986) Anal Biochem , vol.159 , pp. 109-113
    • Gillies, R.J.1    Didier, N.2    Denton, M.3
  • 9
    • 0024454325 scopus 로고
    • Quantification of cells cultured on 96-well plates
    • Kueng W, Silber E, Eppenberger U (1989) Quantification of cells cultured on 96-well plates. Anal Biochem 182: 16-19. (Pubitemid 19251274)
    • (1989) Analytical Biochemistry , vol.182 , Issue.1 , pp. 16-19
    • Kueng, W.1    Silber, E.2    Eppenberger, U.3
  • 11
    • 79960999875 scopus 로고    scopus 로고
    • Fibroblast growth factor receptors are components of autocrine signaling networks in head and neck squamous cell carcinoma cells
    • doi:10.1158/1078-0432.CCR-11-0050
    • Marshall ME, Hinz TK, Kono SA, Singleton KR, Bichon B, et al. (2011) Fibroblast growth factor receptors are components of autocrine signaling networks in head and neck squamous cell carcinoma cells. Clin Cancer Res 17: 5016-5025. doi:10.1158/1078-0432.CCR-11-0050.
    • (2011) Clin Cancer Res , vol.17 , pp. 5016-5025
    • Marshall, M.E.1    Hinz, T.K.2    Kono, S.A.3    Singleton, K.R.4    Bichon, B.5
  • 12
    • 33847710201 scopus 로고    scopus 로고
    • CellProfiler: Free, versatile software for automated biological image analysis
    • doi:10.2144/000112257
    • Lamprecht MR, Sabatini DM, Carpenter AE (2006) CellProfiler: free, versatile software for automated biological image analysis. Biotechniques 42: 71-75. doi:10.2144/000112257.
    • (2006) Biotechniques , vol.42 , pp. 71-75
    • Lamprecht, M.R.1    Sabatini, D.M.2    Carpenter, A.E.3
  • 13
    • 84874046979 scopus 로고    scopus 로고
    • OpenCFU, a New Free and Open-Source Software to Count Cell Colonies and Other Circular Objects
    • doi:10.1371/journal.pone.0054072.g006
    • Geissmann Q (2013) OpenCFU, a New Free and Open-Source Software to Count Cell Colonies and Other Circular Objects. PLoS ONE 8: e54072. doi:10.1371/journal.pone.0054072.g006.
    • (2013) PLoS ONE , vol.8
    • Geissmann, Q.1
  • 14
    • 0036494705 scopus 로고    scopus 로고
    • Extracellular Bad fused to toxin transport domains induces apoptosis
    • Ichinose MM, Liu X-HX, Hagihara NN, Youle RJR (2002) Extracellular Bad fused to toxin transport domains induces apoptosis. Cancer Res 62: 1433-1438.
    • (2002) Cancer Res , vol.62 , pp. 1433-1438
    • Ichinose, M.M.1    Liu, X.-H.X.2    Hagihara, N.N.3    Youle, R.J.R.4
  • 15
    • 0019822443 scopus 로고
    • Rapid clonal growth and serial passage of human diploid fibroblasts in a lipid-enriched synthetic medium supplemented with epidermal growth factor, insulin, and dexamethasone
    • Bettger WJ, Boyce ST, Walthall BJ, Ham RG (1981) Rapid clonal growth and serial passage of human diploid fibroblasts in a lipid-enriched synthetic medium supplemented with epidermal growth factor, insulin, and dexamethasone. Proc Natl Acad Sci USA 78: 5588-5592. doi:10.2307/11510. (Pubitemid 12245195)
    • (1981) Proceedings of the National Academy of Sciences of the United States of America , vol.78 , Issue.9 II , pp. 5588-5592
    • Bettger, W.J.1    Boyce, S.T.2    Walthall, B.J.3    Ham, R.G.4
  • 16
    • 0028141447 scopus 로고
    • Increased levels and constitutive tyrosine phosphorylation of the epidermal growth factor receptor contribute to autonomous growth of human papillomavirus type 16 immortalized human keratinocytes
    • Zyzak LLL, MacDonald LML, Batova AA, Forand RR, Creek KEK, et al. (1994) Increased levels and constitutive tyrosine phosphorylation of the epidermal growth factor receptor contribute to autonomous growth of human papillomavirus type 16 immortalized human keratinocytes. Cell Growth Differ 5: 537-547.
    • (1994) Cell Growth Differ , vol.5 , pp. 537-547
    • Zyzak, L.L.L.1    MacDonald, L.M.L.2    Batova, A.A.3    Forand, R.R.4    Creek, K.E.K.5
  • 17
    • 0033619140 scopus 로고    scopus 로고
    • Human keratinocytes and tumor-derived cell lines express alternatively spliced forms of transforming growth factor-alpha mRNA, encoding precursors lacking carboxyl-terminal valine residues
    • Xu X, Liao J, Creek KE, Pirisi L (1999) Human keratinocytes and tumor-derived cell lines express alternatively spliced forms of transforming growth factor-alpha mRNA, encoding precursors lacking carboxyl-terminal valine residues. Oncogene 18: 5554.
    • (1999) Oncogene , vol.18 , pp. 5554
    • Xu, X.1    Liao, J.2    Creek, K.E.3    Pirisi, L.4
  • 18
    • 0028953612 scopus 로고
    • Comparison of Ability of Protein-Kinase-C Inhibitors to Arrest Cell-Growth and to Alter Cellular Protein-Kinase-C Localization
    • doi:10.1038/bjc.1995.137
    • Courage C, Budworth J, Gescher A (1995) Comparison of Ability of Protein-Kinase-C Inhibitors to Arrest Cell-Growth and to Alter Cellular Protein-Kinase-C Localization. Br J Cancer 71: 697-704. doi:10.1038/bjc.1995. 137.
    • (1995) Br J Cancer , vol.71 , pp. 697-704
    • Courage, C.1    Budworth, J.2    Gescher, A.3
  • 19
    • 0029851176 scopus 로고    scopus 로고
    • Differential effects of staurosporine analogues on cell cycle, growth and viability in A549 cells
    • Courage C, Snowden R, Gescher A (1996) Differential effects of staurosporine analogues on cell cycle, growth and viability in A549 cells. Br J Cancer 74: 1199-1205. doi:10.1038/bjc.1996.517. (Pubitemid 26360107)
    • (1996) British Journal of Cancer , vol.74 , Issue.8 , pp. 1199-1205
    • Courage, C.1    Snowden, R.2    Gescher, A.3
  • 21
    • 77950137429 scopus 로고    scopus 로고
    • Protein kinase inhibition of clinically important staurosporine analogues
    • doi:10.1039/b923848b
    • Gani OABSM, Engh RA (2010) Protein kinase inhibition of clinically important staurosporine analogues. Nat Prod Rep 27: 489-498. doi:10.1039/b923848b.
    • (2010) Nat Prod Rep , vol.27 , pp. 489-498
    • Gani, O.A.B.S.M.1    Engh, R.A.2
  • 23
    • 0024996471 scopus 로고
    • Staurosporine inhibits a tyrosine protein kinase in human hepatoma cell membranes
    • doi:10.1016/0006-291X(90)90519-S
    • Fallon RJ (1990) Staurosporine inhibits a tyrosine protein kinase in human hepatoma cell membranes. Biochem Biophys Res Commun 170: 1191-1196. doi:10.1016/0006-291X(90)90519-S.
    • (1990) Biochem Biophys Res Commun , vol.170 , pp. 1191-1196
    • Fallon, R.J.1
  • 24
    • 17144427728 scopus 로고    scopus 로고
    • Synergistic augmentation of rapamycin-induced autophagy in malignant glioma cells by phosphatidylinositol 3-kinase/protein kinase B inhibitors
    • Takeuchi H, Kondo Y, Fujiwara K, Kanzawa T, Aoki H, et al. (2005) Synergistic augmentation of rapamycin-induced autophagy in malignant glioma cells by phosphatidylinositol 3-kinase/protein kinase B inhibitors. Cancer Res 65: 3336-3346. doi:10.1158/0008-5472.CAN-04-3640. (Pubitemid 40524618)
    • (2005) Cancer Research , vol.65 , Issue.8 , pp. 3336-3346
    • Takeuchi, H.1    Kondo, Y.2    Fujiwara, K.3    Kanzawa, T.4    Aoki, H.5    Mills, G.B.6    Kondo, S.7
  • 25
    • 84877904363 scopus 로고    scopus 로고
    • A herpes simplex virus-derived replicative vector expressing LIF limits experimental demyelinating disease and modulates autoimmunity
    • doi: 10.1371/journal.pone.0064200
    • Nygårdas M, Paavilainen H, Müther N, Nagel CH, Röyttä M, Sodeik B, Hukkanen V (2013) A herpes simplex virus-derived replicative vector expressing LIF limits experimental demyelinating disease and modulates autoimmunity. PLoS One 8(5):e64200. doi: 10.1371/journal.pone.0064200.
    • (2013) PLoS One , vol.8 , Issue.5
    • Nygårdas, M.1    Paavilainen, H.2    Müther, N.3    Nagel, C.H.4    Röyttä, M.5    Sodeik, B.6    Hukkanen, V.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.