A new hantavirus from the stripe-backed shrew (Sorex cylindricauda) in the People's Republic of China

Virus Research

Volumn 184, Issue , 2014, Pages 82-86

  Zuo, Shu Qing ^a   Gong, Zheng Da ^b   Fang, Li Qun ^a   Jiang, Jia Fu ^a   Zhang, Jiu Song ^a   Zhao, Qiu Min ^a   Cao, Wu Chun ^a  

^a BEIJING INSTITUTE OF MICROBIOLOGY AND EPIDEMIOLOGY   (China)

^b Yunnan Institute of Endemic Disease Control and Prevention   (China)

Author keywords

China; Hantavirus; Phylogenetic analysis; Sorex cylindricauda

Indexed keywords

AMINO ACID; CYTOCHROME B; NUCLEOCAPSID PROTEIN; NUCLEOTIDE; VIRUS RNA;

AMINO ACID SEQUENCE; ARTICLE; CHINA; GENE SEQUENCE; HANTAVIRUS; LUNG PARENCHYMA; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; SHREW; SOREX CYLINDRICAUDA; UNINDEXED SEQUENCE; ANIMAL; CLASSIFICATION; CLUSTER ANALYSIS; DNA SEQUENCE; GENETICS; HANTAVIRUS INFECTION; INSECTIVORA; ISOLATION AND PURIFICATION; LUNG; MOLECULAR GENETICS; SEQUENCE HOMOLOGY; VETERINARY; VIROLOGY;

ANIMALS; CHINA; CLUSTER ANALYSIS; HANTAVIRUS; HANTAVIRUS INFECTIONS; INSECTIVORA; LUNG; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, VIRAL; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY; SHREWS;

EID: 84898618993     PISSN: 01681702     EISSN: 18727492     Source Type: Journal    
DOI: 10.1016/j.virusres.2014.02.004     Document Type: Article

References (34)

1. Arai S., Song J.W., Sumibcay L., Bennett S.N., Nerurkar V.R., Parmenter C., Cook J.A., Yates T.L., Yanagihara R. Hantavirus in northern short-tailed shrew, United States. Emerg. Infect. Dis. 2007, 13:1420-1423.
2. Arai S., Bennett S.N., Sumibcay L., Cook J.A., Song J.W., Hope A., Parmenter C., Nerurkar V.R., Yates T.L., Yanagihara R. Phylogenetically distinct hantaviruses in the masked shrew (Sorex cinereus) and dusky shrew (Sorex monticolus) in the United States. Am. J. Trop. Med. Hyg. 2008, 78:348-351.
3. Arai S., Ohdachi S.D., Asakawa M., Kang H.J., Mocz G., Arikawa J., Okabe N., Yanagihara R. Molecular phylogeny of a newfound hantavirus in the Japanese shrew mole (Urotrichus talpoides). Proc. Natl. Acad. Sci. U.S.A. 2008, 105:16296-16301.
4. Arai S., Gu S.H., Baek L.J., Tabara K., Bennett S.N., Oh H.S., Takada N., Kang H.J., Tanaka-Taya K., Morikawa S., Okabe N., Yanagihara R., Song J.W. Divergent ancestral lineages of newfound hantaviruses harbored by phylogenetically related crocidurine shrew species in Korea. Virology 2012, 424:99-105.
5. Arai S., Nguyen S.T., Boldgiv B., Fukui D., Araki K., Dang C.N., Ohdachi S.D., Nguyen N.X., Pham T.D., Boldbaatar B., Satoh H., Yoshikawa Y., Morikawa S., Tanaka-Taya K., Yanagihara R., Oishi K. Novel Bat-borne Hantavirus, Vietnam. Emerg. Infect. Dis. 2013, 19:159-1161.
6. Bi Z., Formenty P.B., Roth C.E. Hantavirus infection: a review and global update. J. Infect. Dev. Ctries. 2008, 2:3-23.
7. Chen S.Z., Chen L.L., Tao G.F., Fu J.L., Zhang C.A., Wu Y.T. Strains of epidemic hemorrhagic fever virus isolated from the lungs of C. russula and A. squamipes. Zhonghua Yu Fang Yi Xue Za Zhi 1986, 20:261-263. (in Chinese).
8. Daniel H., Huson D.H., Scornavacca C. Dendroscope 3: an interactive tool for rooted phylogenetic trees and networks. Syst. Biol. 2012, 61(6):1061-1067. (software freely available from www.dendroscope.org). 10.1093/sysbio/sys062.
9. de Araujo J., Thomazelli L.M., Henriques D.A., Lautenschalager D., Ometto T., Dutra L.M., Aires C.C., Favorito S., Durigon E.L. Detection of hantavirus in bats from remaining rain forest in Sao Paulo, Brazil. BMC Res. Notes 2012, 5:690.
10. Gu S.H., Markowski J., Kang H.J., Hejduk J., Sikorska B., Liberski P.P., Yanagihara R. Boginia virus, a newfound hantavirus harbored by the Eurasian water shrew (Neomys fodiens) in Poland. Virol. J. 2013, 10:160.
11. Guo W.-P., Lin X.-D., Wang W., Zhang X.-H., Chen Y., Cao J.-H., Ni Q.-X., Li W.-C., Li M.-H., Plyusnin A., Zhang Y.-Z. A new subtype of Thottapalayam virus carried by the Asian house shrew (Suncus murinus) in China. Infect. Genet. Evol. 2011, 11:1862-1867.
12. Guo W.P., Lin X.D., Wang W., Tian J.H., Cong M.L., Zhang H.L., Wang M.R., Zhou R.H., Wang J.B., Li M.H., Xu J., Holmes E.C., Zhang Y.Z. Phylogeny and origins of hantaviruses harbored by bats, insectivores, and rodents. PLoS Pathog. 2013, 9:e1003159. 10.1371/journal.ppat.1003159.
13. Kang D.-M., Wang Z.-Q., Wang Y.-L., Zhu W.-S., Song S.-X., Wang J.-Z. Study on hantavirus infection in rodents and people and their relationship in Shandong Province. Zhongguo Gong Gong Wei Sheng 2005, 11:1348-1349. (in Chinese).
14. Kang H.J., Bennett S.N., Hope A.G., Cook J.A., Yanagihara R. Shared ancestry between a newfound mole-borne hantavirus and hantaviruses harbored by cricetid rodents. J. Virol. 2011, 85:7496-7503.
15. Kang H.J., Kadjo B., Dubey S., Jacquet F., Yanagihara R. Molecular evolution of Azagny virus, a newfound hantavirus harbored by the West African pygmy shrew (Crocidura obscurior) in CÔte d'Ivoire. Virol. J. 2011, 8:373.
16. Klein S.L., Calisher C.H. Emergence and persistence of hantaviruses. Curr. Top. Microbiol. Immunol. 2007, 315:217-252.
17. Klempa B., Fichet-Calvet E., Lecompte E., Auste B., Aniskin V., Meisel H., Denys C., Koivogui L., Meulen J., Kruger D.H. Hantavirus in African wood mouse, Guinea. Emerg. Infect. Dis. 2006, 12:838-840.
18. Klempa B., Fichet-Calvet E., Lecompte E., Auste B., Aniskin V., Meisel H., Barriere P., Koivogui L., ter Meulen J., Kruger D.H. Novel hantavirus sequences in shrew, Guinea. Emerg. Infect. Dis. 2007, 13:520-522.
19. Maes P., Klempa B., Clement J., Matthijnssens J., Gajdusek D.C., Krüger D.H., Van Ranst M. A proposal for new criteria for the classification of hantaviruses, based on S and M segment protein sequences. Infect. Genet. Evol. 2009, 9:813-820.
20. Nichol S.T., Beaty B.J., Elliott R.M., Goldbach R., Plyusnin A., Schmaljohn C.S., Tesh R.B. Family Bunyaviridae. Virus Taxonomy: Eighth Report of the International Committee on Taxonomy of Viruses 2005, 695-716. Elsevier, London. C.M. Fauquet, M.A. Mayo, J. Maniloff, U. Desselberger, L.A. Ball (Eds.).
21. Plyusnin A., Morzunov S.P. Virus evolution and genetic diversity of hantaviruses and their rodent hosts. Curr. Top. Microbiol. Immunol. 2001, 256:47-75.
22. Ramsden C., Holmes E.C., Charleston M.A. Hantavirus evolution in relation to its rodent and insectivore hosts: no evidence for codivergence. Mol. Biol. Evol. 2009, 26:143-153.
23. Ronquist F., Huelsenbeck J.P. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 2003, 19:1572-1574.
24. Song J.W., Baek L.J., Schmaljohn C.S., Yanagihara R. Thottapalayam virus, a prototype shrew borne hantavirus. Emerg. Infect. Dis. 2007, 13:980-985.
25. Song J.W., Gu S.H., Bennett S.N., Arai S., Puorger M., Hilbe M., Yanagihara R. Seewis virus, a genetically distinct hantavirus in the Eurasian common shrew (Sorex araneus). Virol. J. 2007, 4:14.
26. Song J.W., Kang H.J., Song K.J., Truong T.T., Bennett S.N., Arai S., Truong N.U., Yanagihara R. Newfound hantavirus in Chinese mole shrew, Vietnam. Emerg. Infect. Dis. 2007, 13:784-1787.
27. Song J.W., Kang H., Gu J., Moon S.H., Bennett S.S., Song S.N., Baek K.J., Kim L.J., O'Guinn H.C., Chong M.L., Klein S.T., Yanagihara T.A.R. Characterization of Imjin virus, a newly isolated hantavirus from the Ussuri white-toothed shrew (Crocidura lasiura). J. Virol. 2009, 83:6184-6191.
28. Sumibcay L., Kadjo B., Gu S.H., Kang H.J., Lim B.K., Cook J.A., Song J.W., Yanagihara R. Divergent lineage of a novel hantavirus in the banana pipistrelle (Neoromicia nanus) in CÔte d'Ivoire. Virol. J. 2012, 9:34.
29. Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 1994, 22:4673-4680.
30. Vaheri A., Strandin T., Hepojoki J., Sironen T., Henttonen H., Makela S., Mustonen J. Uncovering the mysteries of hantavirus infections. Nat. Rev. Microbiol. 2013, 11:539-550.
31. Wang H., Yoshimatsu K., Ebihara H., Ogino M., Araki K., Kariwa H., Wang Z., Luo Z., Li D., Hang C., Arikawa J. Genetic diversity of hantaviruses isolated in china and characterization of novel hantaviruses isolated from Niviventer confucianus and Rattus rattus. Virology 2000, 278:332-345.
32. Weiss S., Witkowski P.T., Auste B., Nowak K., Weber N., Fahr J., Mombouli J.V., Wolfe N.D., Drexler J.F., Drosten C., Klempa B., Leendertz F.H., Kruger D.H. Hantavirus in bat, Sierra Leone. Emerg. Infect. Dis. 2012, 18:159-161.
33. Zeier M., Handermann M., Bahr U., Rensch B., Muller S., Kehm R., Muranyi W., Darai G. New ecological aspects of hantavirus infection: a change of a paradigm and a challenge of prevention - a review. Virus Genes 2005, 30:157-180.
34. Zhang Y.-Z., Zhang H.-L., Yang W.-H., Ya H.-X., Yuan Q.-H. Investigation into the naturally infectious status of hantaviruses in rodents in Yunnan Province, China. Zhong Guo Re Dai Yi Xue 2007, 7(10):1757-1759. (in Chinese).