메뉴 건너뛰기




Volumn 424, Issue 2, 2012, Pages 99-105

Divergent ancestral lineages of newfound hantaviruses harbored by phylogenetically related crocidurine shrew species in Korea

Author keywords

Crocidura; Hantavirus; Jeju Island; Korea; Phylogeny; Shrews

Indexed keywords

AMINO ACID SEQUENCE; ARTICLE; CODON; CONTROLLED STUDY; GENE AMPLIFICATION; GEOGRAPHIC DISTRIBUTION; GLYCOSYLATION; HANTAVIRUS; IMJIN VIRUS; JEJU VIRUS; KOREA; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PHYLOGENETIC TREE; PHYLOGENY; PHYLOGEOGRAPHY; PRIORITY JOURNAL; PROTEIN SECONDARY STRUCTURE; SEQUENCE ALIGNMENT; UNINDEXED SEQUENCE;

EID: 84857030572     PISSN: 00426822     EISSN: 10960341     Source Type: Journal    
DOI: 10.1016/j.virol.2011.11.013     Document Type: Article
Times cited : (53)

References (39)
  • 6
    • 0015151394 scopus 로고
    • Thottapalayam virus: a presumptive arbovirus isolated from a shrew in India
    • Carey D.E., Reuben R., Panicker K.N., Shope R.E., Myers R.M. Thottapalayam virus: a presumptive arbovirus isolated from a shrew in India. Indian J. Med. Res. 1971, 59(11):1758-1760.
    • (1971) Indian J. Med. Res. , vol.59 , Issue.11 , pp. 1758-1760
    • Carey, D.E.1    Reuben, R.2    Panicker, K.N.3    Shope, R.E.4    Myers, R.M.5
  • 7
    • 0031811061 scopus 로고    scopus 로고
    • Jungles: a new solution to the host/parasite phylogeny reconciliation problem
    • Charleston M.A. Jungles: a new solution to the host/parasite phylogeny reconciliation problem. Math. Biosci. 1998, 149(2):191-223.
    • (1998) Math. Biosci. , vol.149 , Issue.2 , pp. 191-223
    • Charleston, M.A.1
  • 8
    • 50249092128 scopus 로고    scopus 로고
    • Biogeographic origin and radiation of the Old World crocidurine shrews (Mammalia: Soricidae) inferred from mitochondrial and nuclear genes
    • Dubey S., Salamin N., Ruedi M., Barriere P., Colyn M., Vogel P. Biogeographic origin and radiation of the Old World crocidurine shrews (Mammalia: Soricidae) inferred from mitochondrial and nuclear genes. Mol. Phylogenet. Evol. 2008, 48(3):953-963.
    • (2008) Mol. Phylogenet. Evol. , vol.48 , Issue.3 , pp. 953-963
    • Dubey, S.1    Salamin, N.2    Ruedi, M.3    Barriere, P.4    Colyn, M.5    Vogel, P.6
  • 10
    • 79551681845 scopus 로고    scopus 로고
    • Genetic diversity of Imjin virus in the Ussuri white-toothed shrew (Crocidura lasiura) in the Republic of Korea, 2004-2010
    • Gu S.H., Kang H.J., Baek L.J., Noh J.Y., Kim H.C., Klein T.A., Yanagihara R., Song J.W. Genetic diversity of Imjin virus in the Ussuri white-toothed shrew (Crocidura lasiura) in the Republic of Korea, 2004-2010. Virol. J. 2011, 8(1):56.
    • (2011) Virol. J. , vol.8 , Issue.1 , pp. 56
    • Gu, S.H.1    Kang, H.J.2    Baek, L.J.3    Noh, J.Y.4    Kim, H.C.5    Klein, T.A.6    Yanagihara, R.7    Song, J.W.8
  • 11
    • 0025764044 scopus 로고
    • Evolution of the cytochrome b gene of mammals
    • Irwin D.M., Kocher T.D., Wilson A.C. Evolution of the cytochrome b gene of mammals. J. Mol. Biol. 1991, 32(2):128-144.
    • (1991) J. Mol. Biol. , vol.32 , Issue.2 , pp. 128-144
    • Irwin, D.M.1    Kocher, T.D.2    Wilson, A.C.3
  • 12
    • 72849120929 scopus 로고    scopus 로고
    • Genetic diversity and phylogeography of Seewis virus in the Eurasian common shrew in Finland and Hungary
    • Kang H.J., Arai S., Hope A.G., Song J.-W., Cook J.A., Yanagihara R. Genetic diversity and phylogeography of Seewis virus in the Eurasian common shrew in Finland and Hungary. Virol. J. 2009, 6(1):208.
    • (2009) Virol. J. , vol.6 , Issue.1 , pp. 208
    • Kang, H.J.1    Arai, S.2    Hope, A.G.3    Song, J.-W.4    Cook, J.A.5    Yanagihara, R.6
  • 13
    • 67349087655 scopus 로고    scopus 로고
    • Host switch during evolution of a genetically distinct hantavirus in the American shrew mole (Neurotrichus gibbsii)
    • Kang H.J., Bennett S.N., Dizney L., Sumibcay L., Arai S., Ruedas L.A., Song J.-W., Yanagihara R. Host switch during evolution of a genetically distinct hantavirus in the American shrew mole (Neurotrichus gibbsii). Virology 2009, 388(1):8-14.
    • (2009) Virology , vol.388 , Issue.1 , pp. 8-14
    • Kang, H.J.1    Bennett, S.N.2    Dizney, L.3    Sumibcay, L.4    Arai, S.5    Ruedas, L.A.6    Song, J.-W.7    Yanagihara, R.8
  • 16
    • 79960428439 scopus 로고    scopus 로고
    • Shared ancestry between a newfound mole-borne hantavirus and hantaviruses harbored by cricetid rodents
    • Kang H.J., Bennett S.N., Hope A.G., Cook J.A., Yanagihara R. Shared ancestry between a newfound mole-borne hantavirus and hantaviruses harbored by cricetid rodents. J. Virol. 2011, 85(15):7496-7503.
    • (2011) J. Virol. , vol.85 , Issue.15 , pp. 7496-7503
    • Kang, H.J.1    Bennett, S.N.2    Hope, A.G.3    Cook, J.A.4    Yanagihara, R.5
  • 17
    • 79960655471 scopus 로고    scopus 로고
    • Molecular evolution of Azagny virus, a newfound hantavirus in the West African pygmy shrew (Crocidura obscurior) in CÔte d'Ivoire
    • Kang H.J., Kadjo B., Dubey S., Jacquet F., Yanagihara R. Molecular evolution of Azagny virus, a newfound hantavirus in the West African pygmy shrew (Crocidura obscurior) in CÔte d'Ivoire. Virol. J. 2011, 8(1):373.
    • (2011) Virol. J. , vol.8 , Issue.1 , pp. 373
    • Kang, H.J.1    Kadjo, B.2    Dubey, S.3    Jacquet, F.4    Yanagihara, R.5
  • 19
    • 0029804192 scopus 로고    scopus 로고
    • Identification and application of the concepts important for accurate and reliable protein secondary structure prediction
    • King R.D., Sternberg M.J. Identification and application of the concepts important for accurate and reliable protein secondary structure prediction. Protein Sci. 1996, 5(11):2298-2310.
    • (1996) Protein Sci. , vol.5 , Issue.11 , pp. 2298-2310
    • King, R.D.1    Sternberg, M.J.2
  • 21
    • 0018089671 scopus 로고
    • Isolation of the etiologic agent of Korean hemorrhagic fever
    • Lee H.W., Lee P.W., Johnson K.M. Isolation of the etiologic agent of Korean hemorrhagic fever. J. Infect. Dis. 1978, 137(3):298-308.
    • (1978) J. Infect. Dis. , vol.137 , Issue.3 , pp. 298-308
    • Lee, H.W.1    Lee, P.W.2    Johnson, K.M.3
  • 22
    • 0019459287 scopus 로고
    • Observations on natural and laboratory infection of rodents with the etiologic agent of Korean hemorrhagic fever
    • Lee H.W., French G.R., Lee P.W., Baek L.J., Tsuchiya K., Foulke R.S. Observations on natural and laboratory infection of rodents with the etiologic agent of Korean hemorrhagic fever. Am. J. Trop. Med. Hyg. 1981, 30(2):477-482.
    • (1981) Am. J. Trop. Med. Hyg. , vol.30 , Issue.2 , pp. 477-482
    • Lee, H.W.1    French, G.R.2    Lee, P.W.3    Baek, L.J.4    Tsuchiya, K.5    Foulke, R.S.6
  • 23
    • 0020402443 scopus 로고
    • Isolation of Hantaan virus, the etiologic agent of Korean hemorrhagic fever, from wild urban rats
    • Lee H.W., Baek L.J., Johnson K.M. Isolation of Hantaan virus, the etiologic agent of Korean hemorrhagic fever, from wild urban rats. J. Infect. Dis. 1982, 146(5):638-644.
    • (1982) J. Infect. Dis. , vol.146 , Issue.5 , pp. 638-644
    • Lee, H.W.1    Baek, L.J.2    Johnson, K.M.3
  • 24
    • 73549089260 scopus 로고    scopus 로고
    • Social and genetic mating systems of the Asian lesser white-toothed shrew, Crocidura shantungensis, in Taiwan
    • Lin T.-T., You E.-M., Lin Y.K. Social and genetic mating systems of the Asian lesser white-toothed shrew, Crocidura shantungensis, in Taiwan. J. Mammal. 2009, 90(6):1370-1380.
    • (2009) J. Mammal. , vol.90 , Issue.6 , pp. 1370-1380
    • Lin, T.-T.1    You, E.-M.2    Lin, Y.K.3
  • 26
    • 2642516524 scopus 로고    scopus 로고
    • Molecular phylogenetics of Crocidura shrews (Insectivora) in east and central Asia
    • Ohdachi S.D., Iwasa M.A., Nesterenko V.A., Abe H., Masuda R., Haberl W. Molecular phylogenetics of Crocidura shrews (Insectivora) in east and central Asia. J. Mammal. 2004, 85(3):396-403.
    • (2004) J. Mammal. , vol.85 , Issue.3 , pp. 396-403
    • Ohdachi, S.D.1    Iwasa, M.A.2    Nesterenko, V.A.3    Abe, H.4    Masuda, R.5    Haberl, W.6
  • 27
    • 0025586669 scopus 로고
    • The history of straits around the Japanese Islands in the late-quaternary
    • Ohshima K. The history of straits around the Japanese Islands in the late-quaternary. Quat. Res. 1990, 29(3):193-208.
    • (1990) Quat. Res. , vol.29 , Issue.3 , pp. 193-208
    • Ohshima, K.1
  • 28
    • 45849154165 scopus 로고    scopus 로고
    • JModelTest: phylogenetic model averaging
    • Posada D. jModelTest: phylogenetic model averaging. Mol. Biol. Evol. 2008, 25(7):1253-1256.
    • (2008) Mol. Biol. Evol. , vol.25 , Issue.7 , pp. 1253-1256
    • Posada, D.1
  • 29
    • 0031773680 scopus 로고    scopus 로고
    • MODELTEST: testing the model of DNA substitution
    • Posada D., Crandall K.A. MODELTEST: testing the model of DNA substitution. Bioinformatics 1998, 14(9):817-818.
    • (1998) Bioinformatics , vol.14 , Issue.9 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 30
    • 57749178865 scopus 로고    scopus 로고
    • Hantavirus evolution in relation to its rodent and insectivore hosts: no evidence for codivergence
    • Ramsden C., Holmes E.C., Charleston M.A. Hantavirus evolution in relation to its rodent and insectivore hosts: no evidence for codivergence. Mol. Biol. Evol. 2009, 26(1):143-153.
    • (2009) Mol. Biol. Evol. , vol.26 , Issue.1 , pp. 143-153
    • Ramsden, C.1    Holmes, E.C.2    Charleston, M.A.3
  • 31
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F., Huelsenbeck J.P. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 2003, 19(12):1572-1574.
    • (2003) Bioinformatics , vol.19 , Issue.12 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 32
    • 38049094993 scopus 로고    scopus 로고
    • Seewis virus, a genetically distinct hantavirus in the Eurasian common shrew (Sorex araneus)
    • Song J.-W., Gu S.H., Bennett S.N., Arai S., Puorger M., Hilbe M., Yanagihara R. Seewis virus, a genetically distinct hantavirus in the Eurasian common shrew (Sorex araneus). Virol. J. 2007, 4:114.
    • (2007) Virol. J. , vol.4 , pp. 114
    • Song, J.-W.1    Gu, S.H.2    Bennett, S.N.3    Arai, S.4    Puorger, M.5    Hilbe, M.6    Yanagihara, R.7
  • 36
    • 50249100595 scopus 로고    scopus 로고
    • A rapid bootstrap algorithm for the RAxML web servers
    • Stamatakis A., Hoover P., Rougemont J. A rapid bootstrap algorithm for the RAxML web servers. Syst. Biol. 2008, 57(5):758-771.
    • (2008) Syst. Biol. , vol.57 , Issue.5 , pp. 758-771
    • Stamatakis, A.1    Hoover, P.2    Rougemont, J.3
  • 37
    • 0027968068 scopus 로고
    • Clustal W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson J.D., Higgins D.G., Gibson T.J. Clustal W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 1994, 22(22):4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , Issue.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 38
    • 34948911392 scopus 로고    scopus 로고
    • Thottapalayam virus is genetically distant to the rodent-borne hantaviruses, consistent with its isolation from the Asian house shrew (Suncus murinus)
    • Yadav P.D., Vincent M.J., Nichol S.T. Thottapalayam virus is genetically distant to the rodent-borne hantaviruses, consistent with its isolation from the Asian house shrew (Suncus murinus). Virol. J. 2007, 4(1):80.
    • (2007) Virol. J. , vol.4 , Issue.1 , pp. 80
    • Yadav, P.D.1    Vincent, M.J.2    Nichol, S.T.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.