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Volumn 101, Issue 1, 2014, Pages 24-27

Development of an allele-specific PCR for Escherichia coli B2 sub-typing, a rapid and easy to perform substitute of multilocus sequence typing

Author keywords

Allele specific PCR; B2 phylogroup; B2 sub group; Escherichia coli; Sequence type complex

Indexed keywords

BACTERIAL DNA;

EID: 84898611621     PISSN: 01677012     EISSN: 18728359     Source Type: Journal    
DOI: 10.1016/j.mimet.2014.03.008     Document Type: Article
Times cited : (74)

References (30)
  • 2
    • 84859173262 scopus 로고    scopus 로고
    • Sequence types and plasmid carriage of uropathogenic Escherichia coli devoid of phenotypically detectable resistance
    • Bengtsson S., Naseer U., Sundsfjord A., Kahlmeter G., Sundqvist M. Sequence types and plasmid carriage of uropathogenic Escherichia coli devoid of phenotypically detectable resistance. J. Antimicrob. Chemother. 2012, 67:69-73.
    • (2012) J. Antimicrob. Chemother. , vol.67 , pp. 69-73
    • Bengtsson, S.1    Naseer, U.2    Sundsfjord, A.3    Kahlmeter, G.4    Sundqvist, M.5
  • 4
    • 34447256783 scopus 로고    scopus 로고
    • Combined multilocus sequence typing and O serogrouping distinguishes Escherichia coli subtypes associated with infant urosepsis and/or meningitis
    • Bidet P., Mahjoub-Messai F., Blanco J., Dehem M., Aujard Y., Bingen E., Bonacorsi S. Combined multilocus sequence typing and O serogrouping distinguishes Escherichia coli subtypes associated with infant urosepsis and/or meningitis. J. Infect. Dis. 2007, 196:297-303.
    • (2007) J. Infect. Dis. , vol.196 , pp. 297-303
    • Bidet, P.1    Mahjoub-Messai, F.2    Blanco, J.3    Dehem, M.4    Aujard, Y.5    Bingen, E.6    Bonacorsi, S.7
  • 6
    • 79953106430 scopus 로고    scopus 로고
    • Animal and human pathogenic Escherichia coli strains share common genetic backgrounds
    • Clermont O., Olier M., Hoede C., et al. Animal and human pathogenic Escherichia coli strains share common genetic backgrounds. Infect. Genet. Evol. 2011, 11:654-662.
    • (2011) Infect. Genet. Evol. , vol.11 , pp. 654-662
    • Clermont, O.1    Olier, M.2    Hoede, C.3
  • 7
    • 84873324306 scopus 로고    scopus 로고
    • The Clermont Escherichia coli phylo-typing method revisited: improvement of specificity and detection of new phylo-groups
    • Clermont O., Christenson J.K., Denamur E., Gordon D.M. The Clermont Escherichia coli phylo-typing method revisited: improvement of specificity and detection of new phylo-groups. Environ. Microbiol. Rep. 2013, 8:58-65.
    • (2013) Environ. Microbiol. Rep. , vol.8 , pp. 58-65
    • Clermont, O.1    Christenson, J.K.2    Denamur, E.3    Gordon, D.M.4
  • 8
    • 73949118739 scopus 로고    scopus 로고
    • Molecular mechanisms of Escherichia coli pathogenicity
    • Croxen M.A., Finlay B.B. Molecular mechanisms of Escherichia coli pathogenicity. Nat. Rev. Microbiol. 2010, 8:26-38.
    • (2010) Nat. Rev. Microbiol. , vol.8 , pp. 26-38
    • Croxen, M.A.1    Finlay, B.B.2
  • 9
    • 84884703559 scopus 로고    scopus 로고
    • Emergence of new variants of ST131 clonal group among extraintestinal pathogenic Escherichia coli producing extended-spectrum beta-lactamases
    • Dahbi G., Mora A., Lopez C., et al. Emergence of new variants of ST131 clonal group among extraintestinal pathogenic Escherichia coli producing extended-spectrum beta-lactamases. Int. J. Antimicrob. Agents 2013, 42:347-351.
    • (2013) Int. J. Antimicrob. Agents , vol.42 , pp. 347-351
    • Dahbi, G.1    Mora, A.2    Lopez, C.3
  • 10
    • 0029093804 scopus 로고
    • Sex in Escherichia coli does not disrupt the clonal structure of the population: evidence from random amplified polymorphic DNA and restriction-fragment-length polymorphism
    • Desjardins P., Picard B., Kaltenbock B., Elion J., Denamur E. Sex in Escherichia coli does not disrupt the clonal structure of the population: evidence from random amplified polymorphic DNA and restriction-fragment-length polymorphism. J. Mol. Evol. 1995, 41:440-448.
    • (1995) J. Mol. Evol. , vol.41 , pp. 440-448
    • Desjardins, P.1    Picard, B.2    Kaltenbock, B.3    Elion, J.4    Denamur, E.5
  • 11
    • 84855830349 scopus 로고    scopus 로고
    • Population structure, virulence potential and antibiotic susceptibility of uropathogenic Escherichia coli from Northwest England
    • Gibreel T.M., Dodgson A.R., Cheesbrough J., Fox A.J., Bolton F.J., Upton M. Population structure, virulence potential and antibiotic susceptibility of uropathogenic Escherichia coli from Northwest England. J. Antimicrob. Chemother. 2012, 67:346-356.
    • (2012) J. Antimicrob. Chemother. , vol.67 , pp. 346-356
    • Gibreel, T.M.1    Dodgson, A.R.2    Cheesbrough, J.3    Fox, A.J.4    Bolton, F.J.5    Upton, M.6
  • 12
    • 0346882653 scopus 로고    scopus 로고
    • The distribution and genetic structure of Escherichia coli in Australian vertebrates: host and geographic effects
    • Gordon D.M., Cowling A. The distribution and genetic structure of Escherichia coli in Australian vertebrates: host and geographic effects. Microbiology 2003, 149:3575-3586.
    • (2003) Microbiology , vol.149 , pp. 3575-3586
    • Gordon, D.M.1    Cowling, A.2
  • 13
    • 13444253010 scopus 로고    scopus 로고
    • Influence of the age and sex of human hosts on the distribution of Escherichia coli ECOR groups and virulence traits
    • Gordon D.M., Stern S.E., Collignon P.J. Influence of the age and sex of human hosts on the distribution of Escherichia coli ECOR groups and virulence traits. Microbiology 2005, 151:15-23.
    • (2005) Microbiology , vol.151 , pp. 15-23
    • Gordon, D.M.1    Stern, S.E.2    Collignon, P.J.3
  • 14
    • 51649120558 scopus 로고    scopus 로고
    • Assigning Escherichia coli strains to phylogenetic groups: multi-locus sequence typing versus the PCR triplex method
    • Gordon D.M., Clermont O., Tolley H., Denamur E. Assigning Escherichia coli strains to phylogenetic groups: multi-locus sequence typing versus the PCR triplex method. Environ. Microbiol. 2008, 10:2484-2496.
    • (2008) Environ. Microbiol. , vol.10 , pp. 2484-2496
    • Gordon, D.M.1    Clermont, O.2    Tolley, H.3    Denamur, E.4
  • 15
    • 60549112381 scopus 로고    scopus 로고
    • Phylogenetic and genomic diversity of human bacteremic Escherichia coli strains
    • Jaureguy F., Landreau L., Passet V., et al. Phylogenetic and genomic diversity of human bacteremic Escherichia coli strains. BMC Genomics 2008, 9:560.
    • (2008) BMC Genomics , vol.9 , pp. 560
    • Jaureguy, F.1    Landreau, L.2    Passet, V.3
  • 16
    • 84898633301 scopus 로고    scopus 로고
    • Rapid and specific detection, molecular epidemiology, and experimental virulence of the O16 subgroup within Escherichia coli sequence type 131
    • (early edition)
    • Johnson J.R., Clermont O., Johnston B., Clabots C., Tchesnokova V., Sokurenko E., Junka A.F., Maczynska B., Denamur E. Rapid and specific detection, molecular epidemiology, and experimental virulence of the O16 subgroup within Escherichia coli sequence type 131. J. Clin. Microbiol 2014, (early edition). 10.1128/JCM.03502-13.
    • (2014) J. Clin. Microbiol
    • Johnson, J.R.1    Clermont, O.2    Johnston, B.3    Clabots, C.4    Tchesnokova, V.5    Sokurenko, E.6    Junka, A.F.7    Maczynska, B.8    Denamur, E.9
  • 17
    • 78650827616 scopus 로고    scopus 로고
    • BIGSdb: scalable analysis of bacterial genome variation at the population level
    • Jolley K.A., Maiden M.C. BIGSdb: scalable analysis of bacterial genome variation at the population level. BMC Bioinforma. 2010, 11:595.
    • (2010) BMC Bioinforma. , vol.11 , pp. 595
    • Jolley, K.A.1    Maiden, M.C.2
  • 18
    • 35848958139 scopus 로고    scopus 로고
    • Extraintestinal virulence is a coincidental by-product of commensalism in B2 phylogenetic group Escherichia coli strains
    • Le Gall T., Clermont O., Gouriou S., Picard B., Nassif X., Denamur E., Tenaillon O. Extraintestinal virulence is a coincidental by-product of commensalism in B2 phylogenetic group Escherichia coli strains. Mol. Biol. Evol. 2007, 24:2373-2384.
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 2373-2384
    • Le Gall, T.1    Clermont, O.2    Gouriou, S.3    Picard, B.4    Nassif, X.5    Denamur, E.6    Tenaillon, O.7
  • 19
    • 0031741481 scopus 로고    scopus 로고
    • Escherichia coli molecular phylogeny using the incongruence length difference test
    • Lecointre G., Rachdi L., Darlu P., Denamur E. Escherichia coli molecular phylogeny using the incongruence length difference test. Mol. Biol. Evol. 1998, 15:1685-1695.
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 1685-1695
    • Lecointre, G.1    Rachdi, L.2    Darlu, P.3    Denamur, E.4
  • 21
    • 79957509353 scopus 로고    scopus 로고
    • Escherichia coli isolates causing bacteremia via gut translocation and urinary tract infection in young infants exhibit different virulence genotypes
    • Mahjoub-Messai F., Bidet P., Caro V., Diancourt L., Biran V., Aujard Y., Bingen E., Bonacorsi S. Escherichia coli isolates causing bacteremia via gut translocation and urinary tract infection in young infants exhibit different virulence genotypes. J. Infect. Dis. 2011, 203:1844-1849.
    • (2011) J. Infect. Dis. , vol.203 , pp. 1844-1849
    • Mahjoub-Messai, F.1    Bidet, P.2    Caro, V.3    Diancourt, L.4    Biran, V.5    Aujard, Y.6    Bingen, E.7    Bonacorsi, S.8
  • 22
    • 84867601075 scopus 로고    scopus 로고
    • Emergence and spread of B2-ST131-O25b, B2-ST131-O16 and D-ST405 clonal groups among extended-spectrum-beta-lactamase-producing Escherichia coli in Japan
    • Matsumura Y., Yamamoto M., Nagao M., Hotta G., Matsushima A., Ito Y., Takakura S., Ichiyama S. Emergence and spread of B2-ST131-O25b, B2-ST131-O16 and D-ST405 clonal groups among extended-spectrum-beta-lactamase-producing Escherichia coli in Japan. J. Antimicrob. Chemother. 2012, 67:2612-2620.
    • (2012) J. Antimicrob. Chemother. , vol.67 , pp. 2612-2620
    • Matsumura, Y.1    Yamamoto, M.2    Nagao, M.3    Hotta, G.4    Matsushima, A.5    Ito, Y.6    Takakura, S.7    Ichiyama, S.8
  • 24
    • 0021367325 scopus 로고
    • Standard reference strains of Escherichia coli from natural populations
    • Ochman H., Selander R.K. Standard reference strains of Escherichia coli from natural populations. J. Bacteriol. 1984, 157:690-693.
    • (1984) J. Bacteriol. , vol.157 , pp. 690-693
    • Ochman, H.1    Selander, R.K.2
  • 27
    • 0019276739 scopus 로고
    • Genetic diversity and structure in Escherichia coli populations
    • Selander R.K., Levin B.R. Genetic diversity and structure in Escherichia coli populations. Science 1980, 210:545-547.
    • (1980) Science , vol.210 , pp. 545-547
    • Selander, R.K.1    Levin, B.R.2
  • 28
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 2011, 28:2731-2739.
    • (2011) Mol. Biol. Evol. , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 30
    • 33745282930 scopus 로고    scopus 로고
    • Sex and virulence in Escherichia coli: an evolutionary perspective
    • Wirth T., Falush D., Lan R., et al. Sex and virulence in Escherichia coli: an evolutionary perspective. Mol. Microbiol. 2006, 60:1136-1151.
    • (2006) Mol. Microbiol. , vol.60 , pp. 1136-1151
    • Wirth, T.1    Falush, D.2    Lan, R.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.