-
1
-
-
0034637161
-
The structural basis of ribosome activity in peptide bond synthesis
-
DOI 10.1126/science.289.5481.920
-
Nissen P, Hansen J, Ban N, Moore PB, Steitz TA (2000) The structural basis of ribosome activity in peptide bo (Pubitemid 30659940)
-
(2000)
Science
, vol.289
, Issue.5481
, pp. 920-930
-
-
Nissen, P.1
Hansen, J.2
Ban, N.3
Moore, P.B.4
Steitz, T.A.5
-
2
-
-
0025367254
-
Self-splicing of group i introns
-
Cech TR (1990) Self-splicing of group I introns. Annu Rev Biochem 59: 543-568.
-
(1990)
Annu Rev Biochem
, vol.59
, pp. 543-568
-
-
Cech, T.R.1
-
3
-
-
0347444723
-
MicroRNAs: Genomics, biogenesis, mechanism, and function
-
Bartel DP (2004) MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 116: 281-297.
-
(2004)
Cell
, vol.116
, pp. 281-297
-
-
Bartel, D.P.1
-
4
-
-
20444478991
-
Riboswitches as versatile gene control elements
-
DOI 10.1016/j.sbi.2005.05.003, PII S0959440X05000874
-
Tucker BJ, Breaker RR (2005) Riboswitches as versatile gene control elements. Curr Opin Struct Biol 15: 342-348. (Pubitemid 40826454)
-
(2005)
Current Opinion in Structural Biology
, vol.15
, Issue.3
, pp. 342-348
-
-
Tucker, B.J.1
Breaker, R.R.2
-
5
-
-
0016169138
-
The molecular mechanism of thermal unfolding of Escherichia coli formylmethionine transfer RNA
-
Crothers DM, Cole PE, Hilbers CW, Shulman RG (1974) The molecular mechanism of thermal unfolding of Escherichia coli formylmethionine transfer RNA. J Mol Biol 87: 63-88.
-
(1974)
J Mol Biol
, vol.87
, pp. 63-88
-
-
Crothers, D.M.1
Cole, P.E.2
Hilbers, C.W.3
Shulman, R.G.4
-
6
-
-
0019317307
-
Sequential folding of transfer RNA. A nuclear magnetic resonance study of successively longer tRNA fragments with a common 59 end
-
Boyle J, Robillard GT, Kim SH (1980) Sequential folding of transfer RNA. A nuclear magnetic resonance study of successively longer tRNA fragments with a common 59 end. J Mol Biol 139: 601-625.
-
(1980)
J Mol Biol
, vol.139
, pp. 601-625
-
-
Boyle, J.1
Robillard, G.T.2
Kim, S.H.3
-
8
-
-
53049092751
-
RNA structure and modeling: Progress and techniques
-
Chai D (2008) RNA structure and modeling: progress and techniques. Prog Nucleic Acid Res Mol Biol 82: 71-100.
-
(2008)
Prog Nucleic Acid Res Mol Biol
, vol.82
, pp. 71-100
-
-
Chai, D.1
-
9
-
-
0036600570
-
The accuracy of ribosomal RNA comparative structure models
-
DOI 10.1016/S0959-440X(02)00339-1
-
Gutell RR, Lee JC, Cannone JJ (2002) The accuracy of ribosomal RNA comparative structure models. Curr Opin Struct Biol 12: 301-310. (Pubitemid 34804611)
-
(2002)
Current Opinion in Structural Biology
, vol.12
, Issue.3
, pp. 301-310
-
-
Gutell, R.R.1
Lee, J.C.2
Cannone, J.J.3
-
10
-
-
1242274330
-
A guide to ions and RNA structure
-
DOI 10.1261/rna.5205404
-
Draper DE (2004) A guide to ions and RNA structure. RNA 10: 335-343. (Pubitemid 38240993)
-
(2004)
RNA
, vol.10
, Issue.3
, pp. 335-343
-
-
Draper, D.E.1
-
11
-
-
0002263171
-
Theory of the melting transition of synthetic polynucleotides: Evaluation of the stacking free energy
-
Crothers DM, Zimm BH (1964) Theory of the Melting Transition of Synthetic Polynucleotides: Evaluation of the Stacking Free Energy. J Mol Biol 9: 1-9.
-
(1964)
J Mol Biol
, vol.9
, pp. 1-9
-
-
Crothers, D.M.1
Zimm, B.H.2
-
12
-
-
0001688911
-
Stabilizing effect of dangling bases on a short RNA double helix as determined by proton nuclear magnetic resonance spectroscopy
-
Romaniuk PJ, Hughes DW, Gregoire RJ, Neilson T, Bell RA (1978) Stabilizing effect of dangling bases on a short RNA double helix as determined by proton nuclear magnetic resonance spectroscopy. J Am Chem Soc 100: 3971-3972.
-
(1978)
J Am Chem Soc
, vol.100
, pp. 3971-3972
-
-
Romaniuk, P.J.1
Hughes, D.W.2
Gregoire, R.J.3
Neilson, T.4
Bell, R.A.5
-
14
-
-
0020674698
-
Base-stacking and base-pairing contributions to helix stability: Thermodynamics of double-helix formation with CCGG, CCGGp, CCGGAp, ACCGGp, CCGGUp, and ACCGGUp
-
Petersheim M, Turner DH (1983) Base-stacking and base-pairing contributions to helix stability: thermodynamics of double-helix formation with CCGG, CCGGp, CCGGAp, ACCGGp, CCGGUp, and ACCGGUp. Biochem 22: 256-263. (Pubitemid 13146564)
-
(1983)
Biochemistry
, vol.22
, Issue.2
, pp. 256-263
-
-
Petersheim, M.1
Turner, D.H.2
-
15
-
-
0001613489
-
Effects of 39 dangling end stacking on the stability of GGCC and CCGG double helixes
-
Freier SM, Burger BJ, Alkema D, Neilson T, Turner DH (1983) Effects of 39 dangling end stacking on the stability of GGCC and CCGG double helixes. Biochem 22: 6198-6206.
-
(1983)
Biochem
, vol.22
, pp. 6198-6206
-
-
Freier, S.M.1
Burger, B.J.2
Alkema, D.3
Neilson, T.4
Turner, D.H.5
-
16
-
-
0022424620
-
Contributions of dangling end stacking and terminal base-pair formation to the stabilities of XGGCCp, XCCGGp, XGGCCYp, and XCCGGYp helixes
-
Freier SM, Alkema D, Sinclair A, Neilson T, Turner DH (1985) Contributions of dangling end stacking and terminal base-pair formation to the stabilities of XGGCCp, XCCGGp, XGGCCYp, and XCCGGYp helixes. Biochem 24: 4533-4539.
-
(1985)
Biochem
, vol.24
, pp. 4533-4539
-
-
Freier, S.M.1
Alkema, D.2
Sinclair, A.3
Neilson, T.4
Turner, D.H.5
-
17
-
-
0022427468
-
Effects of terminal mismatches on RNA stability: Thermodynamics of duplex formation for ACCGGGp, ACCGGAp, and ACCGGCp
-
Hickey DR, Turner DH (1985) Effects of terminal mismatches on RNA stability: thermodynamics of duplex formation for ACCGGGp, ACCGGAp, and ACCGGCp. Biochem 24: 3987-3991.
-
(1985)
Biochem
, vol.24
, pp. 3987-3991
-
-
Hickey, D.R.1
Turner, D.H.2
-
18
-
-
0023040885
-
Stability of XGCGCp, GCGCYp, and XGCGCYp helixes: An empirical estimate of the energetics of hydrogen bonds in nucleic acids
-
Freier SM, Sugimoto N, Sinclair A, Alkema D, Neilson T, et al. (1986) Stability of XGCGCp, GCGCYp, and XGCGCYp helixes: an empirical estimate of the energetics of hydrogen bonds in nucleic acids. Biochem 25: 3214-3219.
-
(1986)
Biochem
, vol.25
, pp. 3214-3219
-
-
Freier, S.M.1
Sugimoto, N.2
Sinclair, A.3
Alkema, D.4
Neilson, T.5
-
19
-
-
0023653195
-
Sequence dependence for the energetics of dangling ends and terminal base pairs in ribonucleic acid
-
Sugimoto N, Kierzek R, Turner DH (1987) Sequence dependence for the energetics of dangling ends and terminal base pairs in ribonucleic acid. Biochem 26: 4554-4558.
-
(1987)
Biochem
, vol.26
, pp. 4554-4558
-
-
Sugimoto, N.1
Kierzek, R.2
Turner, D.H.3
-
20
-
-
0016161038
-
Peptide antibiotic-oligonucleotide interactions Nuclear magnetic resonance investigations of complex formation between actinomycin D and d-ApTpGpCpApT in aqueous solution
-
Patel DJ (1974) Peptide antibiotic-oligonucleotide interactions. Nuclear magnetic resonance investigations of complex formation between actinomycin D and d-ApTpGpCpApT in aqueous solution. Biochem 13: 2396-2402.
-
(1974)
Biochem
, vol.13
, pp. 2396-2402
-
-
Patel, D.J.1
-
21
-
-
0016760824
-
Proton nuclear magnetic resonance investigations of fraying in double-stranded d-ApTpGpCpApT in H2O solution
-
Patel DJ, Hilbers CW (1975) Proton nuclear magnetic resonance investigations of fraying in double-stranded d-ApTpGpCpApT in H2O solution. Biochem 14: 2651-2656.
-
(1975)
Biochem
, vol.14
, pp. 2651-2656
-
-
Patel, D.J.1
Hilbers, C.W.2
-
22
-
-
33744832602
-
Ultrafast dynamics in DNA: "Fraying" at the end of the helix
-
DOI 10.1021/ja0582105
-
Andreatta D, Sen S, Perez Lustres JL, Kovalenko SA, Ernsting NP, et al. (2006) Ultrafast dynamics in DNA: "fraying" at the end of the helix. J Am Chem Soc 128: 6885-6892. (Pubitemid 43830575)
-
(2006)
Journal of the American Chemical Society
, vol.128
, Issue.21
, pp. 6885-6892
-
-
Andreatta, D.1
Sen, S.2
Perez Lustres, J.L.3
Kovalenko, S.A.4
Ernsting, N.P.5
Murphy, C.J.6
Coleman, R.S.7
Berg, M.A.8
-
23
-
-
0025047647
-
Architecture of ribosomal RNA: Constraints on the sequence of "tetra-loops"
-
Woese CR, Winker S, Gutell RR (1990) Architecture of ribosomal RNA: constraints on the sequence of "tetra-loops". Proc Natl Acad Sci USA 87: 8467-8471.
-
(1990)
Proc Natl Acad Sci USA
, vol.87
, pp. 8467-8471
-
-
Woese, C.R.1
Winker, S.2
Gutell, R.R.3
-
24
-
-
0037258776
-
The lonepair triloop: A new motif in RNA structure
-
DOI 10.1016/S0022-2836(02)01106-3
-
Lee JC, Cannone JJ, Gutell RR (2003) The lonepair triloop: a new motif in RNA structure. J Mol Biol 325: 65-83. (Pubitemid 36152998)
-
(2003)
Journal of Molecular Biology
, vol.325
, Issue.1
, pp. 65-83
-
-
Lee, J.C.1
Cannone, J.J.2
Gutell, R.R.3
-
25
-
-
0035919726
-
AA.AG@Helix.Ends: A:A and A:G Base-pairs at the Ends of 16 S and 23 S rRNA helices
-
DOI 10.1006/jmbi.2001.4807
-
Elgavish T, Cannone JJ, Lee JC, Harvey SC, Gutell RR (2001) AA.AG@helix. ends: A:A and A:G base-pairs at the ends of 16 S and 23 S rRNA helices. J Mol Biol 310: 735-753. (Pubitemid 32695692)
-
(2001)
Journal of Molecular Biology
, vol.310
, Issue.4
, pp. 735-753
-
-
Elgavish, T.1
Cannone, J.J.2
Lee, J.C.3
Harvey, S.C.4
Gutell, R.R.5
-
26
-
-
0016146021
-
Three-dimensional tertiary structure of yeast phenylalanine transfer RNA
-
Kim SH, Suddath FL, Quigley GJ, McPherson A, Sussman JL, et al. (1974) Three-dimensional tertiary structure of yeast phenylalanine transfer RNA. Science 185: 435-440
-
(1974)
Science
, vol.185
, pp. 435-440
-
-
Kim, S.H.1
Suddath, F.L.2
Quigley, G.J.3
McPherson, A.4
Sussman, J.L.5
-
27
-
-
0023973247
-
CUUCGG hairpins: Extraordinarily stable RNA secondary structures associated with various biochemical processes
-
Tuerk C, Gauss P, Thermes C, Groebe DR, Gayle M, et al. (1988) CUUCGG hairpins: extraordinarily stable RNA secondary structures associated with various biochemical processes. Proc Natl Acad Sci USA 85: 1364-1368.
-
(1988)
Proc Natl Acad Sci USA
, vol.85
, pp. 1364-1368
-
-
Tuerk, C.1
Gauss, P.2
Thermes, C.3
Groebe, D.R.4
Gayle, M.5
-
28
-
-
0025071240
-
Solution structure of an unusually stable RNA hairpin, 59GGAC(UUCG)GUCC
-
Cheong C, Varani G, Tinoco I Jr. (1990) Solution structure of an unusually stable RNA hairpin, 59GGAC(UUCG)GUCC. Nature 346: 680-682.
-
(1990)
Nature
, vol.346
, pp. 680-682
-
-
Cheong, C.1
Varani, G.2
Tinoco Jr., I.3
-
29
-
-
0025942059
-
A thermodynamic study of unusually stable RNA and DNA hairpins
-
Antao VP, Lai SY, Tinoco I Jr. (1991) A thermodynamic study of unusually stable RNA and DNA hairpins. Nucleic Acids Res 19: 5901-5905. (Pubitemid 21913002)
-
(1991)
Nucleic Acids Research
, vol.19
, Issue.21
, pp. 5901-5905
-
-
Antao, V.P.1
Lai, S.Y.2
Tinoco Jr., I.3
-
30
-
-
0032568589
-
Structural features of the UCCG and UGCG tetraloops in very short hairpins as evidenced by optical spectroscopy
-
DOI 10.1021/bi980011t
-
Abdelkafi M, Leulliot N, Baumruk V, Bednarova L, Turpin PY, et al. (1998) Structural features of the UCCG and UGCG tetraloops in very short hairpins as evidenced by optical spectroscopy. Biochem 37: 7878-7884. (Pubitemid 28248648)
-
(1998)
Biochemistry
, vol.37
, Issue.21
, pp. 7878-7884
-
-
Abdelkafi, M.1
Leulliot, N.2
Baumruk, V.3
Bednarova, L.4
Turpin, P.Y.5
Namane, A.6
Gouyette, C.7
Huynh-Dinh, T.8
Ghomi, M.9
-
31
-
-
0023040892
-
Free energy contributions of G.U and other terminal mismatches to helix stability
-
Freier SM, Kierzek R, Caruthers MH, Neilson T, Turner DH (1986) Free energy contributions of G.U and other terminal mismatches to helix stability. Biochem 25: 3209-3213.
-
(1986)
Biochem
, vol.25
, pp. 3209-3213
-
-
Freier, S.M.1
Kierzek, R.2
Caruthers, M.H.3
Neilson, T.4
Turner, D.H.5
-
32
-
-
12044257509
-
Functional group substitutions as probes of hydrogen bonding between GA mismatches in RNA internal loops
-
SantaLucia J Jr., Kierzek R, Turner DH (1991) Functional group substitutions as probes of hydrogen bonding between GA mismatches in RNA internal loops. J Am Chem Soc 113: 4313-4322.
-
(1991)
J Am Chem Soc
, vol.113
, pp. 4313-4322
-
-
SantaLucia Jr., J.1
Kierzek, R.2
Turner, D.H.3
-
33
-
-
0025663103
-
Prediction of rhoindependent Escherichia coli transcription terminators A statistical analysis of their RNA stem-loop structures
-
d'Aubenton Carafa Y, Brody E, Thermes C (1990) Prediction of rhoindependent Escherichia coli transcription terminators. A statistical analysis of their RNA stem-loop structures. J Mol Biol 216: 835-858.
-
(1990)
J Mol Biol
, vol.216
, pp. 835-858
-
-
D'aubenton Carafa, Y.1
Brody, E.2
Thermes, C.3
-
34
-
-
0024290472
-
Amino acid preferences for specific locations at the ends of alpha helices
-
Richardson JS, Richardson DC (1988) Amino acid preferences for specific locations at the ends of alpha helices. Science 240: 1648-1652.
-
(1988)
Science
, vol.240
, pp. 1648-1652
-
-
Richardson, J.S.1
Richardson, D.C.2
-
35
-
-
0024972479
-
Capping and alpha-helix stability
-
Serrano L, Fersht AR (1989) Capping and alpha-helix stability. Nature 342: 296-299.
-
(1989)
Nature
, vol.342
, pp. 296-299
-
-
Serrano, L.1
Fersht, A.R.2
-
36
-
-
0028173780
-
Rules for alpha-helix termination by glycine
-
Aurora R, Srinivasan R, Rose GD (1994) Rules for alpha-helix termination by glycine. Science 264: 1126-1130. (Pubitemid 2080614)
-
(1994)
Science
, vol.264
, Issue.5162
, pp. 1126-1130
-
-
Aurora, R.1
Srinivasan, R.2
Rose, G.D.3
-
37
-
-
0034699518
-
Structure of the 30S ribosomal subunit
-
Wimberly BT, Brodersen DE, Clemons WM Jr., Morgan-Warren RJ, Carter AP, et al. (2000) Structure of the 30S ribosomal subunit. Nature 407: 327-339.
-
(2000)
Nature
, vol.407
, pp. 327-339
-
-
Wimberly, B.T.1
Brodersen, D.E.2
Clemons Jr., W.M.3
Morgan-Warren, R.J.4
Carter, A.P.5
-
38
-
-
2942615089
-
The roles of ribosomal proteins in the structure assembly, and evolution of the large ribosomal subunit
-
DOI 10.1016/j.jmb.2004.03.076, PII S0022283604003845
-
Klein DJ, Moore PB, Steitz TA (2004) The roles of ribosomal proteins in the structure assembly, and evolution of the large ribosomal subunit. J Mol Biol 340: 141-177. (Pubitemid 38739442)
-
(2004)
Journal of Molecular Biology
, vol.340
, Issue.1
, pp. 141-177
-
-
Klein, D.J.1
Moore, P.B.2
Steitz, T.A.3
-
39
-
-
9244238182
-
Diversity of base-pair conformations and their occurrence in rRNA structure and RNA structural motifs
-
DOI 10.1016/j.jmb.2004.09.072, PII S002228360401229X
-
Lee JC, Gutell RR (2004) Diversity of base-pair conformations and their occurrence in rRNA structure and RNA structural motifs. J Mol Biol 344: 1225-1249. (Pubitemid 39550475)
-
(2004)
Journal of Molecular Biology
, vol.344
, Issue.5
, pp. 1225-1249
-
-
Lee, J.C.1
Gutell, R.R.2
-
40
-
-
0027439912
-
The conformation of loop E of eukaryotic 5S ribosomal RNA
-
DOI 10.1021/bi00055a013
-
Wimberly B, Varani G, Tinoco I Jr. (1993) The conformation of loop E of eukaryotic 5S ribosomal RNA. Biochem 32: 1078-1087. (Pubitemid 23057683)
-
(1993)
Biochemistry
, vol.32
, Issue.4
, pp. 1078-1087
-
-
Wimberly, B.1
Varani, G.2
Tinoco Jr., I.3
-
41
-
-
0034405491
-
A story: Unpaired adenosine bases in ribosomal RNAs
-
Gutell RR, Cannone JJ, Shang Z, Du Y, Serra MJ (2000) A story: unpaired adenosine bases in ribosomal RNAs. J Mol Biol 304: 335-354.
-
(2000)
J Mol Biol
, vol.304
, pp. 335-354
-
-
Gutell, R.R.1
Cannone, J.J.2
Shang, Z.3
Du, Y.4
Serra, M.J.5
-
42
-
-
84898610678
-
-
Ph.D. Dissertation. The University of Texas at Austin
-
Lee JC (2003) Ph.D. Dissertation. The University of Texas at Austin.
-
(2003)
-
-
Lee, J.C.1
-
43
-
-
14344256105
-
Solution structure of an RNA internal loop with three consecutive sheared GA pairs
-
DOI 10.1021/bi048079y
-
Chen G, Znosko BM, Kennedy SD, Krugh TR, Turner DH (2005) Solution structure of an RNA internal loop with three consecutive sheared GA pairs. Biochem 44: 2845-2856. (Pubitemid 40293660)
-
(2005)
Biochemistry
, vol.44
, Issue.8
, pp. 2845-2856
-
-
Chen, G.1
Znosko, B.M.2
Kennedy, S.D.3
Krugh, T.R.4
Turner, D.H.5
-
44
-
-
0035423087
-
The kink-turn: A new RNA secondary structure motif
-
DOI 10.1093/emboj/20.15.4214
-
Klein DJ, Schmeing TM, Moore PB, Steitz TA (2001) The kink-turn: a new RNA secondary structure motif. EMBO J 20: 4214-4221. (Pubitemid 32751837)
-
(2001)
EMBO Journal
, vol.20
, Issue.15
, pp. 4214-4221
-
-
Klein, D.J.1
Schmeing, T.M.2
Moore, P.B.3
Steitz, T.A.4
-
45
-
-
33745951899
-
The UAA/GAN Internal Loop Motif: A New RNA Structural Element that Forms a Cross-strand AAA Stack and Long-range Tertiary Interactions
-
DOI 10.1016/j.jmb.2006.05.066, PII S0022283606006838
-
Lee JC, Gutell RR, Russell R (2006) The UAA/GAN internal loop motif: a new RNA structural element that forms a cross-strand AAA stack and long-range tertiary interactions. J Mol Biol 360: 978-988. (Pubitemid 44062516)
-
(2006)
Journal of Molecular Biology
, vol.360
, Issue.5
, pp. 978-988
-
-
Lee, J.C.1
Gutell, R.R.2
Russell, R.3
-
46
-
-
0021755621
-
Relative stability of guanosine-cytidine diribonucleotide cores: A 1H NMR assessment
-
Sinclair A, Alkema D, Bell RA, Coddington JM, Hughes DW, et al. (1984) Relative stability of guanosine-cytidine diribonucleotide cores: a 1H NMR assessment. Biochem 23: 2656-2662.
-
(1984)
Biochem
, vol.23
, pp. 2656-2662
-
-
Sinclair, A.1
Alkema, D.2
Bell, R.A.3
Coddington, J.M.4
Hughes, D.W.5
-
47
-
-
34547696927
-
Structural basis for aminoglycoside inhibition of bacterial ribosome recycling
-
DOI 10.1038/nsmb1271, PII NSMB1271
-
Borovinskaya MA, Pai RD, Zhang W, Schuwirth BS, Holton JM, et al. (2007) Structural basis for aminoglycoside inhibition of bacterial ribosome recycling. Nat Struct Mol Biol 14: 727-732. (Pubitemid 47220057)
-
(2007)
Nature Structural and Molecular Biology
, vol.14
, Issue.8
, pp. 727-732
-
-
Borovinskaya, M.A.1
Pai, R.D.2
Zhang, W.3
Schuwirth, B.S.4
Holton, J.M.5
Hirokawa, G.6
Kaji, H.7
Kaji, A.8
Cate, J.H.D.9
-
48
-
-
0019876473
-
Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information
-
Zuker M, Stiegler P (1981) Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information. Nucleic Acids Res 9: 133-148.
-
(1981)
Nucleic Acids Res
, vol.9
, pp. 133-148
-
-
Zuker, M.1
Stiegler, P.2
|