Structural features of the UCCG and UGCG tetraloops in very short hairpins as evidenced by optical spectroscopy

Biochemistry

Volumn 37, Issue 21, 1998, Pages 7878-7884

  Abdelkafi, M ^a   Leulliot, N ^a   Baumruk, V ^b   Bednarova L ^c   Turpin, P Y ^a   Namane, A ^d   Gouyette, C ^d   Huynh Dinh, T ^d   Ghomi, M ^a  

^a CNRS   (France)

^b CHARLES UNIVERSITY   (Czech Republic)

^c INSTITUTE OF ORGANIC CHEMISTRY AND BIOCHEMISTRY   (Czech Republic)

^d INSTITUT PASTEUR   (France)

Author keywords

[No Author keywords available]

Indexed keywords

RNA;

ARTICLE; CONFORMATIONAL TRANSITION; HYDROGEN BOND; LIGHT ABSORPTION; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN FOLDING; PROTEIN STABILITY; RAMAN SPECTROMETRY; RNA CONFORMATION; SPECTROSCOPY;

EID: 0032568589     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi980011t     Document Type: Article

References (32)

1. Tuerk, C., Gauss, P., Thermes, C., Groebe, D. R., Gayle, M., Guild, N., Stormo, G., Aubenton-Carafa, Y., Uhlenbeck, O. C., Tinoco, I., Jr., Brody, E. N., and Gold, L. (1988) Proc. Natl. Acad. Sci. U.S.A. 85, 1364-1368.
2. Uhlenbeck, O. C. (1990) Nature 346, 613-614.
3. Woese, C. R., Winker, S., and Gutell, R. R. (1990) Proc. Natl. Acad Sci. U.S.A. 87, 8467-8471.
4. Wolters, J. (1992) Nucleic Acids Res. 20, 1843-1850.
5. Varani, G. (1995) Annu. Rev. Biophys. Biomol. Struct. 24, 379-404.
6. Sakata, T., Hiroaki, H., Oda, Y., Tanaka, T., Ikehara, M., and Uesugi, S. (1990) Nucleic Acids Res. 18, 3881-3839.
7. Cheong, C., Varani, G., and Tinoco, I., Jr. (1990) Nature 346, 680-681.
8. Varani, G., Cheong, C., and Tinoco, I., Jr. (1991) Biochemistry 30, 3280-3289.
9. Antao, V. P., Lai, S. Y., and Tinoco, I., Jr. (1991) Nucleic Acids Res. 19, 5901-5905.
10. Antao, V. P., and Tinoco, I., Jr. (1992) Nucleic Acids Res. 20, 819-824.
11. Molinaro, M., and Tinoco, I., Jr. (1995) Nucleic Acids Res. 23, 3056-3063.
12. Abdelkafi, M., Leulliot, N., Ghomi, M., Hervé du Penhoat, C., Namane, A., Gouyette, C., Huynh-Dinh, T., Baumruk, V., and Turpin, P.-Y. (1997) J. Mol. Struct. 409, 241-245.
13. Abdelkafi, M., Ghomi, M., Turpin, P.-Y., Baumruk, V., Hervé du Penhoat, C., Lampire, O., Bouchemal-Chibani, N., Goyer, P., Namane, A., Gouyette, C., Huynh-Dinh, T., and Bednarova, L. (1997) J. Biomol. Struct. Dyn. 14, 579-593.
14. Nowakowski, J., and Tinoco, I., Jr. (1996) Biochemistry 35, 2577-2585.
15. Allain, F. H. T., and Varani, G. (1995) J. Mol. Biol 250, 333-353.
16. Bouchemal-Chibani, N., Lebrun, A., Herve du Penhoat, C., Ghomi, M., Laigle, L., Derouet, C., and Turpin, P.-Y. (1994) J. Biomol. Struct. Dyn. 12, 695-724.
17. Bouchemal-Chibani, N., Abdelkafi, M., Hervé du Penhoat, C., Ghomi, M., and Turpin, P.-Y. (1996) Biopolymers 39, 549-571.
18. Hanus, J., Kubelka, J., Baumruk, V., Praus, P., and Stepanek, J. (1995) Proceedings of 10th Spectroscopic Conference with International Participation, Czech Spectroscopic Society, Lanskroun.
19. Kanyo, J. E., Duhamel, J., and Lu, P. (1996) Nucleic Acids Res. 24, 4015-4022.
20. Small, E. W., and Peticolas, W. L. (1971) Biopolymers 10, 1377-1416.
21. Liquier, J., and Taillandier, E. (1996) in Infrared Spectroscopy of Biomolecules (Mantsch, H. H., and Chapman, D., Eds.) pp 131-158, Wiley-Liss, Inc., New York.
22. Small, E. W., Brown, K. J., and Peticolas, W. L. (1972) Biopolymers 11, 1209-1215.
23. Brown, K. G., Kiser, E. J., and Peticolas, W. L. (1972) Biopolymers 11, 1855-1869.
24. Prescott, B., Gamache, J., Livramento, J., and Thomas, G. J., Jr (1974) Biopolymers 13, 1821-1845.
25. Dohy, D., Ghomi, M., and Taillandier, E. (1989) J. Biomol. Struct. Dyn. 6, 741-754.
26. Liquier, J., Akhebat, A., Taillandier, E., Ceolin, F., Huynh Dinh, T., and Igolen, J. (1991) Spectrochim. Acta 47a, 177-186.
27. Letellier, R., Ghomi, M., and Taillandier, E. (1989) J. Biomol. Struct Dyn. 6, 755-768.
28. Pohl, F. M., Ranade, A., and Stockburger, M. (1973) Biochim. Biophys. Acta 335, 85-92.
29. Thamann, T. J., Lord, R. C., Wang, A. H. J., and Rich, A. (1981) Nucleic Acids Res. 20, 5443-5447.
30. Nishimura, Y., Tsuboi, M., Uesugi, S., Ohkubo, M., and Ikehara, M. (1985) Nucleic Acids Res. Symp. Ser. 16, 25-28.
31. Trulson, M. O., Cruz, P., Puglisi, D., Tinoco, I., Jr., and Mathies, R. A. (1987) Biochemistry 26, 8624-8630.
32. Lafleur, B., Rice, J., and Thomas, G. J., Jr. (1972) Biopolymers 11, 2423-2437.