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Volumn 118, Issue 14, 2014, Pages 3864-3880

Molecular dynamics simulations of sodium dodecyl sulfate micelles in water - The effect of the force field

Author keywords

[No Author keywords available]

Indexed keywords

CRYSTAL ATOMIC STRUCTURE; METAL IONS; MOLECULAR DYNAMICS; OXYGEN; SODIUM; SODIUM DODECYL SULFATE; SURFACE ACTIVE AGENTS;

EID: 84898478459     PISSN: 15206106     EISSN: 15205207     Source Type: Journal    
DOI: 10.1021/jp410689m     Document Type: Article
Times cited : (151)

References (87)
  • 1
    • 0003124388 scopus 로고
    • 117. Alkyl Sulphate. Part I. Criticla Micelle Concentration of the Sodium Salts
    • Evans, H. C. 117. Alkyl Sulphate. Part I. Criticla Micelle Concentration of the Sodium Salts J. Chem. Soc. 1956, 579-586
    • (1956) J. Chem. Soc. , pp. 579-586
    • Evans, H.C.1
  • 2
    • 0142078749 scopus 로고
    • The Structure of the Micellar Solutions of Some Amphiphilic Compounds in Pure Water as Determined by Absolute Small-Angle X-Ray Scattering Techniques
    • Reiss-Husson, F.; Luzzati, V. The Structure of the Micellar Solutions of Some Amphiphilic Compounds in Pure Water as Determined by Absolute Small-Angle X-Ray Scattering Techniques J. Phys. Chem. 1964, 68, 3504-3511
    • (1964) J. Phys. Chem. , vol.68 , pp. 3504-3511
    • Reiss-Husson, F.1    Luzzati, V.2
  • 4
    • 0001082209 scopus 로고
    • An Investigation of the Micellar Phase of Sodium Dodecyl Sulfate in Aqueous Sodium Chloride Solutions Using Quasielastic Light Scattering Spectroscopy
    • Mazer, N. A.; Benedek, G. B.; Carey, M. C. An Investigation of the Micellar Phase of Sodium Dodecyl Sulfate in Aqueous Sodium Chloride Solutions Using Quasielastic Light Scattering Spectroscopy J. Phys. Chem. 1976, 80, 1075-1085
    • (1976) J. Phys. Chem. , vol.80 , pp. 1075-1085
    • Mazer, N.A.1    Benedek, G.B.2    Carey, M.C.3
  • 5
    • 0001404190 scopus 로고
    • Distance Distribution Function of Sodium Dodecyl Sulfate Micelles by X-Ray Scattering
    • Itri, R.; Amaral, L. Q. Distance Distribution Function of Sodium Dodecyl Sulfate Micelles by X-Ray Scattering J. Phys. Chem. 1991, 95, 423-427
    • (1991) J. Phys. Chem. , vol.95 , pp. 423-427
    • Itri, R.1    Amaral, L.Q.2
  • 6
    • 0000891847 scopus 로고
    • Temperature and Concentration Dependence of Properties of Sodium Dodecyl Sulfate Mlcelies Determlned from Small-Angle Neutron Scattering Experiments
    • Bezzobotnov, V. Y.; Borbely, S.; Cser, L.; Farago, B.; Gladkih, I. A.; Ostanevich, Y. M.; Vass, S. Temperature and Concentration Dependence of Properties of Sodium Dodecyl Sulfate Mlcelies Determlned from Small-Angle Neutron Scattering Experiments J. Phys. Chem. 1988, 92, 5138-5143
    • (1988) J. Phys. Chem. , vol.92 , pp. 5138-5143
    • Bezzobotnov, V.Y.1    Borbely, S.2    Cser, L.3    Farago, B.4    Gladkih, I.A.5    Ostanevich, Y.M.6    Vass, S.7
  • 7
    • 0000975839 scopus 로고    scopus 로고
    • Precision Relative Aggregation Number Determinations of SDS Micelles Using a Spin Probe. A Model of Micelle Surface Hydration
    • Bales, B. L.; Messina, L.; Vidal, A.; Peric, M.; Nascimento, O. R. Precision Relative Aggregation Number Determinations of SDS Micelles Using a Spin Probe. A Model of Micelle Surface Hydration J. Phys. Chem. B 1998, 102, 10347-10358
    • (1998) J. Phys. Chem. B , vol.102 , pp. 10347-10358
    • Bales, B.L.1    Messina, L.2    Vidal, A.3    Peric, M.4    Nascimento, O.R.5
  • 8
    • 0001227725 scopus 로고
    • Acoustic Study on the Kinetics for the Dissociation-Recombination Reaction between Micelle and Counterion in Sodium Dodecyl Sulfate Solution
    • Yasunaga, T.; Oguri, H.; Miura, M. Acoustic Study on the Kinetics for the Dissociation-Recombination Reaction between Micelle and Counterion in Sodium Dodecyl Sulfate Solution J. Colloid Interface Sci. 1967, 23, 352-357
    • (1967) J. Colloid Interface Sci. , vol.23 , pp. 352-357
    • Yasunaga, T.1    Oguri, H.2    Miura, M.3
  • 9
    • 0642360186 scopus 로고
    • Structure of Ionic Micelles from Small Angle Neutron Scattering
    • Bendedouch, D.; Chen, S.-H.; Koehler, W. C. Structure of Ionic Micelles From Small Angle Neutron Scattering J. Phys. Chem. 1983, 87, 153-159
    • (1983) J. Phys. Chem. , vol.87 , pp. 153-159
    • Bendedouch, D.1    Chen, S.-H.2    Koehler, W.C.3
  • 10
    • 0033568827 scopus 로고    scopus 로고
    • Structure of Pure SDS and DTAB Micelles in Brine Determined by Small-Angle Neutron Scattering (SANS)
    • Bergstrom, M.; Pedersen, J. S. Structure of Pure SDS and DTAB Micelles in Brine Determined by Small-Angle Neutron Scattering (SANS) Phys. Chem. Chem. Phys. 1999, 1, 4437-4446
    • (1999) Phys. Chem. Chem. Phys. , vol.1 , pp. 4437-4446
    • Bergstrom, M.1    Pedersen, J.S.2
  • 11
    • 84888412793 scopus 로고    scopus 로고
    • Temperature Effect on the Nanostructure of SDS Micelles in Water
    • Hammouda, B. Temperature Effect on the Nanostructure of SDS Micelles in Water J. Res. Natl. Inst. Stand. Technol. 2013, 118, 151-167
    • (2013) J. Res. Natl. Inst. Stand. Technol. , vol.118 , pp. 151-167
    • Hammouda, B.1
  • 12
    • 0000120732 scopus 로고
    • The Second CMC of the Aqueous Solution of Sodium Dodecyl Sulfate. III. Light-Scattering
    • Kodama, M.; Kubota, Y.; Miura, M. The Second CMC of the Aqueous Solution of Sodium Dodecyl Sulfate. III. Light-Scattering Bull. Chem. Soc. Jpn. 1972, 45, 2953-2955
    • (1972) Bull. Chem. Soc. Jpn. , vol.45 , pp. 2953-2955
    • Kodama, M.1    Kubota, Y.2    Miura, M.3
  • 13
    • 0345451598 scopus 로고    scopus 로고
    • Determination of the First and Second CMCs of Surfactants by Adsorptive Voltammetry
    • Ma, C.; Li, G.; Xu, Y.; Wang, H.; Ye, X. Determination of the First and Second CMCs of Surfactants by Adsorptive Voltammetry Colloids Surf., A 1998, 143, 89-94
    • (1998) Colloids Surf., A , vol.143 , pp. 89-94
    • Ma, C.1    Li, G.2    Xu, Y.3    Wang, H.4    Ye, X.5
  • 14
    • 79953025802 scopus 로고    scopus 로고
    • Determination of the Critical Premicelle Concentration, First Critical Micelle Concentration and Second Critical Micelle Concentration of Surfactants by Resonance Rayleigh Scattering Method without Any Probe
    • Shi, Y.; Luo, H. Q.; Li, N. B. Determination of the Critical Premicelle Concentration, First Critical Micelle Concentration and Second Critical Micelle Concentration of Surfactants by Resonance Rayleigh Scattering Method without Any Probe Spectrochim. Acta, Part A 2011, 78, 1403-1407
    • (2011) Spectrochim. Acta, Part A , vol.78 , pp. 1403-1407
    • Shi, Y.1    Luo, H.Q.2    Li, N.B.3
  • 15
    • 0000485851 scopus 로고
    • Phase Diagram of Sodium Dodecyl Sulfate-Water System: I A Calorimetric Study
    • Kekicheff, P.; Grabielle-Madelmont, C.; Ollivon, M. Phase Diagram of Sodium Dodecyl Sulfate-Water System: I A Calorimetric Study J. Colloid Interface Sci. 1989, 131, 112-132
    • (1989) J. Colloid Interface Sci. , vol.131 , pp. 112-132
    • Kekicheff, P.1    Grabielle-Madelmont, C.2    Ollivon, M.3
  • 16
    • 0001075382 scopus 로고
    • Phase Diagram of Sodium Dodecyl Sulfate-Water System 2. Complementary Isoplethal and Isothermal Phase Studies
    • Kekicheff, P. Phase Diagram of Sodium Dodecyl Sulfate-Water System 2. Complementary Isoplethal and Isothermal Phase Studies J. Colloid Interface Sci. 1989, 131, 133-152
    • (1989) J. Colloid Interface Sci. , vol.131 , pp. 133-152
    • Kekicheff, P.1
  • 17
    • 33645955096 scopus 로고
    • Thermodynamic Analysis of the Growth of Sodium Dodecyl Sulfate Micelles
    • Missel, P. J.; Mazer, N. A.; Benedek, G. B.; Young, C. Y.; Carey, M. C. Thermodynamic Analysis of the Growth of Sodium Dodecyl Sulfate Micelles J. Phys. Chem. 1980, 84, 1044-1057
    • (1980) J. Phys. Chem. , vol.84 , pp. 1044-1057
    • Missel, P.J.1    Mazer, N.A.2    Benedek, G.B.3    Young, C.Y.4    Carey, M.C.5
  • 18
    • 33845185496 scopus 로고
    • Influence of Alkali-Metal Counterion Identity on the Sphere-to-Rod Transition in Alkyl Sulfate Micelles
    • Missel, P. J.; Mazer, N. A.; Carey, M. C.; Benedek, G. B. Influence of Alkali-Metal Counterion Identity on the Sphere-to-Rod Transition in Alkyl Sulfate Micelles J. Phys. Chem. 1989, 93, 8354-8366
    • (1989) J. Phys. Chem. , vol.93 , pp. 8354-8366
    • Missel, P.J.1    Mazer, N.A.2    Carey, M.C.3    Benedek, G.B.4
  • 19
    • 38749100959 scopus 로고    scopus 로고
    • Ambiguity in Determining the Shape of Alkali Alkyl Sulfate Micelles from Small-Angle Scattering Data
    • Vass, S.; Pedersen, J. S.; Plestil, J.; Laggner, P.; Rétfalvi, E.; Varga, I.; Gilányi, T. Ambiguity in Determining the Shape of Alkali Alkyl Sulfate Micelles from Small-Angle Scattering Data Langmuir 2008, 24, 408-417
    • (2008) Langmuir , vol.24 , pp. 408-417
    • Vass, S.1    Pedersen, J.S.2    Plestil, J.3    Laggner, P.4    Rétfalvi, E.5    Varga, I.6    Gilányi, T.7
  • 21
    • 0000948942 scopus 로고
    • Energy Parameters in Polypeptides. 8. Empirical Potential Energy Algorithm for the Conformational Analyisis of Large Molecules
    • Dunfield, L. G.; Burgess, A. W.; Scheraga, H. A. Energy Parameters in Polypeptides. 8. Empirical Potential Energy Algorithm for the Conformational Analyisis of Large Molecules J. Phys. Chem. 1978, 82, 2609-2616
    • (1978) J. Phys. Chem. , vol.82 , pp. 2609-2616
    • Dunfield, L.G.1    Burgess, A.W.2    Scheraga, H.A.3
  • 23
    • 0842341771 scopus 로고
    • AM1: A New General Purpose Quantum Mechanical Molecular Model
    • Dewar, M. S.; Zoebisch, E. G.; Healy, E. F.; Stewart, J. P. AM1: A New General Purpose Quantum Mechanical Molecular Model J. Am. Chem. Soc. 1985, 107, 3902-3909
    • (1985) J. Am. Chem. Soc. , vol.107 , pp. 3902-3909
    • Dewar, M.S.1    Zoebisch, E.G.2    Healy, E.F.3    Stewart, J.P.4
  • 24
    • 20444425200 scopus 로고
    • Crystal Structure of Potassium Ethyl Sulphate
    • Jarvis, J. A. J. Crystal Structure of Potassium Ethyl Sulphate Acta Crystallogr. 1953, 6, 327-330
    • (1953) Acta Crystallogr. , vol.6 , pp. 327-330
    • Jarvis, J.A.J.1
  • 25
    • 0001156309 scopus 로고
    • Intermolecular Potential Functlons and Monte Carlo Simulations for Liquid Sulfur Compounds
    • Jorgensen, W. L. Intermolecular Potential Functlons and Monte Carlo Simulations for Liquid Sulfur Compounds J. Phys. Chem. 1986, 90, 6379-6388
    • (1986) J. Phys. Chem. , vol.90 , pp. 6379-6388
    • Jorgensen, W.L.1
  • 26
    • 2942744900 scopus 로고    scopus 로고
    • Computer Simulation Studies of Newton Black Films
    • Bresme, F.; Faraudo, J. Computer Simulation Studies of Newton Black Films Langmuir 2004, 20, 5127-5137
    • (2004) Langmuir , vol.20 , pp. 5127-5137
    • Bresme, F.1    Faraudo, J.2
  • 27
    • 79958811444 scopus 로고    scopus 로고
    • Adhesive Transitions in Newton Black Films: A Computer Simulation Study
    • Bresme, F.; Chacon, E.; Martinez, H.; Tarazona, P. Adhesive Transitions in Newton Black Films: A Computer Simulation Study J. Chem. Phys. 2011, 134, 214701-1-214701-214712
    • (2011) J. Chem. Phys. , vol.134 , pp. 2147011-214701214712
    • Bresme, F.1    Chacon, E.2    Martinez, H.3    Tarazona, P.4
  • 28
    • 78649282017 scopus 로고    scopus 로고
    • Electronic Structure Computations of Newton Black Films
    • Bresme, F.; Artacho, E. Electronic Structure Computations of Newton Black Films J. Mater. Chem. 2010, 20, 10351-10358
    • (2010) J. Mater. Chem. , vol.20 , pp. 10351-10358
    • Bresme, F.1    Artacho, E.2
  • 29
    • 46949106901 scopus 로고    scopus 로고
    • Molecular Dynamics Simulation of Interactions between a Sodium Dodecyl Sulfate Micelle and a Poly(ethylene Oxide) Polymer
    • Shang, B. Z.; Wang, Z.; Larson, R. G. Molecular Dynamics Simulation of Interactions between a Sodium Dodecyl Sulfate Micelle and a Poly(ethylene Oxide) Polymer J. Phys. Chem. B 2008, 112, 2888-2900
    • (2008) J. Phys. Chem. B , vol.112 , pp. 2888-2900
    • Shang, B.Z.1    Wang, Z.2    Larson, R.G.3
  • 30
    • 35548982245 scopus 로고    scopus 로고
    • Structural Properties of Ionic Detergent Aggregates: A Large-Scale Molecular Dynamics Study of Sodium Dodecyl Sulfate
    • Sammalkorpi, M.; Karttunen, M.; Haataja, M. Structural Properties of Ionic Detergent Aggregates: A Large-Scale Molecular Dynamics Study of Sodium Dodecyl Sulfate J. Phys. Chem. B 2007, 111, 11722-11733
    • (2007) J. Phys. Chem. B , vol.111 , pp. 11722-11733
    • Sammalkorpi, M.1    Karttunen, M.2    Haataja, M.3
  • 31
    • 0347963579 scopus 로고
    • Molecular Dynamics Simulation Analysis of a Sodium Dodecyl Sulfate Micelle in Aqueous Solution: Decreased Fluidity of the Micelle Hydrocarbon Interior
    • MacKerell, A. D., Jr. Molecular Dynamics Simulation Analysis of a Sodium Dodecyl Sulfate Micelle in Aqueous Solution: Decreased Fluidity of the Micelle Hydrocarbon Interior J. Phys. Chem. 1995, 99, 1846-1855
    • (1995) J. Phys. Chem. , vol.99 , pp. 1846-1855
    • Mackerell Jr., A.D.1
  • 32
    • 33745727725 scopus 로고    scopus 로고
    • A Molecular Dynamics Study of Surface Structure of Spherical SDS Micelles
    • Yoshii, N.; Okazaki, S. A Molecular Dynamics Study of Surface Structure of Spherical SDS Micelles Chem. Phys. Lett. 2006, 426, 66-70
    • (2006) Chem. Phys. Lett. , vol.426 , pp. 66-70
    • Yoshii, N.1    Okazaki, S.2
  • 33
    • 38149082329 scopus 로고    scopus 로고
    • A Molecular Dynamics Study of Structure and Dynamics of Surfactant Molecules in SDS Spherical Micelle
    • Yoshii, N.; Okazaki, S. A Molecular Dynamics Study of Structure and Dynamics of Surfactant Molecules in SDS Spherical Micelle Condens. Matter Phys. 2007, 10, 573-578
    • (2007) Condens. Matter Phys. , vol.10 , pp. 573-578
    • Yoshii, N.1    Okazaki, S.2
  • 34
    • 0037129516 scopus 로고    scopus 로고
    • Molecular Dynamics Simulation of Sodium Dodecyl Sulfate Micelle in Water: Micellar Structural Characteristics and Counterion Distribution
    • Bruce, C. D.; Berkowitz, M. L.; Perera, L.; Forbes, M. D. E. Molecular Dynamics Simulation of Sodium Dodecyl Sulfate Micelle in Water: Micellar Structural Characteristics and Counterion Distribution J. Phys. Chem. B 2002, 106, 3788-3793
    • (2002) J. Phys. Chem. B , vol.106 , pp. 3788-3793
    • Bruce, C.D.1    Berkowitz, M.L.2    Perera, L.3    Forbes, M.D.E.4
  • 35
    • 0037168311 scopus 로고    scopus 로고
    • Molecular Dynamics Simulations of Sodium Dodecyl Sulfate Micelle in Water: The Behavior of Water
    • Bruce, C. D.; Senapati, S.; Berkowitz, M. L.; Perera, L.; Forbes, M. D. E. Molecular Dynamics Simulations of Sodium Dodecyl Sulfate Micelle in Water: The Behavior of Water J. Phys. Chem. B 2002, 106, 10902-10907
    • (2002) J. Phys. Chem. B , vol.106 , pp. 10902-10907
    • Bruce, C.D.1    Senapati, S.2    Berkowitz, M.L.3    Perera, L.4    Forbes, M.D.E.5
  • 36
    • 0001480302 scopus 로고    scopus 로고
    • Simulation of Sodium Dodecyl Sulfate at the Water-Vapor and Water-Carbon Tetrachloride Interfaces at Low Surface Coverage
    • Schweighofer, K. J.; Essmann, U.; Berkowitz, M. Simulation of Sodium Dodecyl Sulfate at the Water-Vapor and Water-Carbon Tetrachloride Interfaces at Low Surface Coverage J. Phys. Chem. B 1997, 101, 3793-3799
    • (1997) J. Phys. Chem. B , vol.101 , pp. 3793-3799
    • Schweighofer, K.J.1    Essmann, U.2    Berkowitz, M.3
  • 37
    • 33744992425 scopus 로고    scopus 로고
    • A Molecular Dynamics Study of Structural Stability of Spherical SDS Micelle as a Function of Its Size
    • Yoshii, N.; Okazaki, S. A Molecular Dynamics Study of Structural Stability of Spherical SDS Micelle as a Function of Its Size Chem. Phys. Lett. 2006, 425, 58-61
    • (2006) Chem. Phys. Lett. , vol.425 , pp. 58-61
    • Yoshii, N.1    Okazaki, S.2
  • 38
    • 84855598709 scopus 로고    scopus 로고
    • A Molecular Dynamics Investigation of Structure and Dynamics of SDS and SDBS Micelles
    • Palazzesi, F.; Calvaresi, M.; Zerbetto, F. A Molecular Dynamics Investigation of Structure and Dynamics of SDS and SDBS Micelles Soft Matter 2011, 7, 9148-9156
    • (2011) Soft Matter , vol.7 , pp. 9148-9156
    • Palazzesi, F.1    Calvaresi, M.2    Zerbetto, F.3
  • 39
    • 20444380056 scopus 로고    scopus 로고
    • From Homogeneous Dispersion to Micelles-a Molecular Dynamics Simulation on the Compromise of the Hydrophilic and Hydrophobic Effects of Sodium Dodecyl Sulfate in Aqueous Solution
    • Gao, J.; Ge, W.; Hu, G.; Li, J. From Homogeneous Dispersion to Micelles-a Molecular Dynamics Simulation on the Compromise of the Hydrophilic and Hydrophobic Effects of Sodium Dodecyl Sulfate in Aqueous Solution Langmuir 2005, 21, 5223-5229
    • (2005) Langmuir , vol.21 , pp. 5223-5229
    • Gao, J.1    Ge, W.2    Hu, G.3    Li, J.4
  • 40
    • 71849100139 scopus 로고    scopus 로고
    • Molecular Dynamics Simulation of Effect of Salt on the Compromise of Hydrophilic and Hydrophobic Interactions in Sodium Dodecyl Sulfate Micelle Solutions
    • Gao, J.; Ren, Y.; Ge, W. Molecular Dynamics Simulation of Effect of Salt on the Compromise of Hydrophilic and Hydrophobic Interactions in Sodium Dodecyl Sulfate Micelle Solutions Chin. J. Chem. Eng. 2009, 17, 654-660
    • (2009) Chin. J. Chem. Eng. , vol.17 , pp. 654-660
    • Gao, J.1    Ren, Y.2    Ge, W.3
  • 41
    • 78549242306 scopus 로고    scopus 로고
    • Classic Force Field for Predicting Surface Tension and Interfacial Properties of Sodium Dodecyl Sulfate
    • Cheng, T.; Chen, Q.; Li, F.; Sun, H. Classic Force Field for Predicting Surface Tension and Interfacial Properties of Sodium Dodecyl Sulfate J. Phys. Chem. B 2010, 114, 13736-13744
    • (2010) J. Phys. Chem. B , vol.114 , pp. 13736-13744
    • Cheng, T.1    Chen, Q.2    Li, F.3    Sun, H.4
  • 42
    • 4444351490 scopus 로고    scopus 로고
    • Empirical Force Fields for Biological Macromolecules: Overview and Issues
    • MacKerell, A. D., Jr. Empirical Force Fields for Biological Macromolecules: Overview and Issues J. Comput. Chem. 2004, 25, 1584-1604
    • (2004) J. Comput. Chem. , vol.25 , pp. 1584-1604
    • Mackerell Jr., A.D.1
  • 43
    • 0000795938 scopus 로고
    • Free Energies of Hydration and Pure Liquid Properties of Hydrocarbons from the OPLS All-Atom Model
    • Kaminski, G.; Duffy, E. M.; Matsui, T.; Jorgensen, W. L. Free Energies of Hydration and Pure Liquid Properties of Hydrocarbons from the OPLS All-Atom Model J. Phys. Chem. 1994, 98, 13077-13082
    • (1994) J. Phys. Chem. , vol.98 , pp. 13077-13082
    • Kaminski, G.1    Duffy, E.M.2    Matsui, T.3    Jorgensen, W.L.4
  • 44
    • 84988053694 scopus 로고
    • An All Atom Force Field for Simulations of Proteins and Nucleic Acids
    • Weiner, S. J.; Kollman, P. A.; Nguyen, D. T.; Case, D. A. An All Atom Force Field for Simulations of Proteins and Nucleic Acids J. Comput. Chem. 1986, 7, 230-252
    • (1986) J. Comput. Chem. , vol.7 , pp. 230-252
    • Weiner, S.J.1    Kollman, P.A.2    Nguyen, D.T.3    Case, D.A.4
  • 45
    • 0035425883 scopus 로고    scopus 로고
    • An Improved GROMOS96 Force Field for Aliphatic Hydrocarbons in the Condensed Condensed Phase
    • Schuler, L. D.; Daura, X.; van Gunsteren, W. F. An Improved GROMOS96 Force Field for Aliphatic Hydrocarbons in the Condensed Condensed Phase J. Comput. Chem. 2001, 22, 1205-1218
    • (2001) J. Comput. Chem. , vol.22 , pp. 1205-1218
    • Schuler, L.D.1    Daura, X.2    Van Gunsteren, W.F.3
  • 46
    • 4444282928 scopus 로고    scopus 로고
    • A Biomolecular Force Field Based on the Free Enthalpy of Hydration and Solvation: The GROMOS Force-Field Parameter Sets 53A5 and 53A6
    • Oostenbrink, C.; Villa, A.; Mark, A. E.; van Gunsteren, W. F. A Biomolecular Force Field Based on the Free Enthalpy of Hydration and Solvation: The GROMOS Force-Field Parameter Sets 53A5 and 53A6 J. Comput. Chem. 2004, 25, 1656-1676
    • (2004) J. Comput. Chem. , vol.25 , pp. 1656-1676
    • Oostenbrink, C.1    Villa, A.2    Mark, A.E.3    Van Gunsteren, W.F.4
  • 47
    • 79954480884 scopus 로고    scopus 로고
    • New Interaction Parameters for Oxygen Compounds in the GROMOS Force Field: Improved Pure-Liquid and Solvation Properties for Alcohols, Ethers, Aldehydes, Ketones, Carboxylic Acids, and Esters
    • Horta, B. A. C.; Fuchs, P. F. J.; van Gunsteren, W. F.; Hunenberger, P. H. New Interaction Parameters for Oxygen Compounds in the GROMOS Force Field: Improved Pure-Liquid and Solvation Properties for Alcohols, Ethers, Aldehydes, Ketones, Carboxylic Acids, and Esters J. Chem. Theory Comput. 2011, 7, 1016-1031
    • (2011) J. Chem. Theory Comput. , vol.7 , pp. 1016-1031
    • Horta, B.A.C.1    Fuchs, P.F.J.2    Van Gunsteren, W.F.3    Hunenberger, P.H.4
  • 49
    • 70449578877 scopus 로고    scopus 로고
    • Effect of Headgroup Size, Charge, and Solvent Structure on Polymer-Micelle Interactions, Studied by Molecular Dynamics Simulations
    • Shang, B. Z.; Wang, Z.; Larson, R. G. Effect of Headgroup Size, Charge, and Solvent Structure on Polymer-Micelle Interactions, Studied by Molecular Dynamics Simulations J. Phys. Chem. B 2009, 113, 15170-15180
    • (2009) J. Phys. Chem. B , vol.113 , pp. 15170-15180
    • Shang, B.Z.1    Wang, Z.2    Larson, R.G.3
  • 52
  • 53
    • 9144220288 scopus 로고    scopus 로고
    • Transferable Potentials for Phase Equilibria. 6. United-Atom Description for Ethers, Glycols, Ketones, and Aldehydes
    • Stubbs, J. M.; Potoff, J. J.; Siepmann, J. I. Transferable Potentials for Phase Equilibria. 6. United-Atom Description for Ethers, Glycols, Ketones, and Aldehydes J. Phys. Chem. B 2004, 108, 17596-17605
    • (2004) J. Phys. Chem. B , vol.108 , pp. 17596-17605
    • Stubbs, J.M.1    Potoff, J.J.2    Siepmann, J.I.3
  • 54
    • 79960182810 scopus 로고    scopus 로고
    • Development of the CHARMM Force Field for Lipids
    • Pastor, R. W.; MacKerell, A. D., Jr. Development of the CHARMM Force Field for Lipids J. Phys. Chem. Lett. 2011, 2, 1526-1532
    • (2011) J. Phys. Chem. Lett. , vol.2 , pp. 1526-1532
    • Pastor, R.W.1    Mackerell Jr., A.D.2
  • 55
    • 0029912748 scopus 로고    scopus 로고
    • Development and Testing of the OPLS All-Atom Force Field on Conformational Energetics and Properties of Organic Liquids
    • Jorgensen, W. L.; Maxwell, D. S.; Tirado-Rives, J. Development and Testing of the OPLS All-Atom Force Field on Conformational Energetics and Properties of Organic Liquids J. Chem. Soc. 1996, 118, 11225-11236
    • (1996) J. Chem. Soc. , vol.118 , pp. 11225-11236
    • Jorgensen, W.L.1    Maxwell, D.S.2    Tirado-Rives, J.3
  • 56
    • 79955926226 scopus 로고    scopus 로고
    • Van. Validation of the GROMOS 54A7 Force Field with Respect to B -Peptide Folding
    • Huang, W.; Lin, Z.; Gunsteren, W. F. Van. Validation of the GROMOS 54A7 Force Field with Respect to B -Peptide Folding J. Chem. Theory Comput. 2011, 7, 1237-1243
    • (2011) J. Chem. Theory Comput. , vol.7 , pp. 1237-1243
    • Huang, W.1    Lin, Z.2    Gunsteren, W.F.3
  • 57
    • 84873695685 scopus 로고    scopus 로고
    • Testing of the GROMOS Force-Field Parameter Set 54A8: Structural Properties of Electrolyte Solutions, Lipid Bilayers, and Proteins
    • Reif, M. M.; Winger, M.; Oostenbrink, C. Testing of the GROMOS Force-Field Parameter Set 54A8: Structural Properties of Electrolyte Solutions, Lipid Bilayers, and Proteins J. Chem. Theory Comput. 2013, 9, 1247-1264
    • (2013) J. Chem. Theory Comput. , vol.9 , pp. 1247-1264
    • Reif, M.M.1    Winger, M.2    Oostenbrink, C.3
  • 58
    • 84898440865 scopus 로고    scopus 로고
    • GROMOS Developer. Private Communication.
    • Jozica, D. GROMOS Developer. Private Communication, 2013.
    • (2013)
    • Jozica, D.1
  • 60
    • 84863386144 scopus 로고    scopus 로고
    • Molecular Dynamics Simulation of Pyrene Solubilized in a Sodium Dodecyl Sulfate Micelle
    • Yan, H.; Cui, P.; Liu, C.-B.; Yuan, S.-L. Molecular Dynamics Simulation of Pyrene Solubilized in a Sodium Dodecyl Sulfate Micelle Langmuir 2012, 28, 4931-4938
    • (2012) Langmuir , vol.28 , pp. 4931-4938
    • Yan, H.1    Cui, P.2    Liu, C.-B.3    Yuan, S.-L.4
  • 62
    • 78650680564 scopus 로고    scopus 로고
    • Practical Considerations for Building GROMOS-Compatible Small-Molecule Topologies
    • Lemkul, J. A.; Allen, W. J.; Bevan, D. R. Practical Considerations for Building GROMOS-Compatible Small-Molecule Topologies J. Chem. Inf. Model. 2010, 50, 2221-2235
    • (2010) J. Chem. Inf. Model. , vol.50 , pp. 2221-2235
    • Lemkul, J.A.1    Allen, W.J.2    Bevan, D.R.3
  • 64
    • 0033747705 scopus 로고    scopus 로고
    • Computer Simulations of Sodium Dodecyl Sulfate at Liquid/Liquid and Liquid/Vapor Interfaces
    • Dominguez, H.; Berkowitz, M. L. Computer Simulations of Sodium Dodecyl Sulfate at Liquid/Liquid and Liquid/Vapor Interfaces J. Phys. Chem. B 2000, 104, 5302-5308
    • (2000) J. Phys. Chem. B , vol.104 , pp. 5302-5308
    • Dominguez, H.1    Berkowitz, M.L.2
  • 66
    • 0034250744 scopus 로고    scopus 로고
    • An Improved Empirical Potential Energy Function for Molecular Simulations of Phospholipids
    • Feller, S. E.; MacKerell, A. D., Jr. An Improved Empirical Potential Energy Function for Molecular Simulations of Phospholipids J. Phys. Chem. B 2000, 104, 7510-7515
    • (2000) J. Phys. Chem. B , vol.104 , pp. 7510-7515
    • Feller, S.E.1    Mackerell Jr., A.D.2
  • 68
    • 79958841703 scopus 로고    scopus 로고
    • SwissParam: A Fast Force Field Generation Tool for Small Organic Molecules
    • Zoete, V.; Cuendet, M. A.; Grosdidier, A.; Michielin, O. SwissParam: A Fast Force Field Generation Tool for Small Organic Molecules J. Comput. Chem. 2011, 32, 2359-2368
    • (2011) J. Comput. Chem. , vol.32 , pp. 2359-2368
    • Zoete, V.1    Cuendet, M.A.2    Grosdidier, A.3    Michielin, O.4
  • 69
    • 84898401909 scopus 로고    scopus 로고
    • Programs Written by GROMACS Users: Other Software; topolgen-1.1.tgz (accessed Dec 19).
    • Programs Written by GROMACS Users: Other Software; http://www.gromacs. org/Downloads/User-contributions/Other-software, topolgen-1.1.tgz (accessed Dec 19, 2013).
    • (2013)
  • 70
    • 0021376732 scopus 로고
    • Energy Component Analysis for Dilute Aqueous Solutions of Li', Na+, F-, and C1- Ions
    • Chandrasekhar, J.; Spellmeyer, D. C.; Jorgensen, W. L. Energy Component Analysis for Dilute Aqueous Solutions of Li', Na+, F-, and C1- Ions J. Am. Chem. Soc. 1984, 106, 903-910
    • (1984) J. Am. Chem. Soc. , vol.106 , pp. 903-910
    • Chandrasekhar, J.1    Spellmeyer, D.C.2    Jorgensen, W.L.3
  • 71
    • 0344796204 scopus 로고
    • Ion-Water Interaction Potentials Derived from Free Energy Perturbation Simulations
    • Aqvist, J. Ion-Water Interaction Potentials Derived From Free Energy Perturbation Simulations J. Phys. Chem. 1990, 94, 8021-8024
    • (1990) J. Phys. Chem. , vol.94 , pp. 8021-8024
    • Aqvist, J.1
  • 72
    • 0029636784 scopus 로고
    • Mechanism and Thermodynamics of Ion Selectivity in Aqueous Solutions of 18-Crown-6 Ether: A Molecular Dynamics Study
    • Dang, L. X. Mechanism and Thermodynamics of Ion Selectivity in Aqueous Solutions of 18-Crown-6 Ether: A Molecular Dynamics Study J. Am. Chem. Soc. 1995, 117, 6954-6960
    • (1995) J. Am. Chem. Soc. , vol.117 , pp. 6954-6960
    • Dang, L.X.1
  • 73
    • 49449085241 scopus 로고    scopus 로고
    • Determination of Alkali and Halide Monovalent Ion Parameters for Use in Explicitly Solvated Biomolecular Simulations
    • Joung, I. S.; Cheatham, T. E. Determination of Alkali and Halide Monovalent Ion Parameters for Use in Explicitly Solvated Biomolecular Simulations J. Phys. Chem. B 2008, 112, 9020-9041
    • (2008) J. Phys. Chem. B , vol.112 , pp. 9020-9041
    • Joung, I.S.1    Cheatham, T.E.2
  • 74
    • 33846191634 scopus 로고    scopus 로고
    • Halide, Ammonium, and Alkali Metal Ion Parameters for Modeling Aqueous Solutions
    • Jensen, K. P.; Jorgensen, W. L. Halide, Ammonium, and Alkali Metal Ion Parameters for Modeling Aqueous Solutions J. Chem. Theory Comput. 2006, 2, 1499-1509
    • (2006) J. Chem. Theory Comput. , vol.2 , pp. 1499-1509
    • Jensen, K.P.1    Jorgensen, W.L.2
  • 75
    • 33645941402 scopus 로고
    • The OPLS Potential Functions for Proteins. Energy Minimizations for Crystals of Cyclic Peptides and Crambin
    • Jorgensen, W. L.; Tirado-Rives, J. The OPLS Potential Functions for Proteins. Energy Minimizations for Crystals of Cyclic Peptides and Crambin J. Am. Chem. Soc. 1988, 110, 1657-1671
    • (1988) J. Am. Chem. Soc. , vol.110 , pp. 1657-1671
    • Jorgensen, W.L.1    Tirado-Rives, J.2
  • 76
    • 69949118458 scopus 로고    scopus 로고
    • Software News and Update Packmol: A Package for Building Initial Configurations
    • Martínez, L.; Andrade, R.; Birgin, E. G.; Martínez, J. M. Software News and Update Packmol: A Package for Building Initial Configurations J. Comput. Chem. 2009, 30, 2157-2164
    • (2009) J. Comput. Chem. , vol.30 , pp. 2157-2164
    • Martínez, L.1    Andrade, R.2    Birgin, E.G.3    Martínez, J.M.4
  • 77
    • 17944391445 scopus 로고    scopus 로고
    • Packing Optimization for Automated Generation of Complex System ' S Initial Configurations for Molecular Dynamics and Docking
    • Martinez, J. M.; Martinez, L. Packing Optimization for Automated Generation of Complex System ' S Initial Configurations for Molecular Dynamics and Docking J. Comput. Chem. 2003, 24, 819-825
    • (2003) J. Comput. Chem. , vol.24 , pp. 819-825
    • Martinez, J.M.1    Martinez, L.2
  • 78
    • 37049112723 scopus 로고
    • Self-Consistent Structural and Dynamic Study of Concentrated Micelle Solutions
    • Hayter, J. B.; Penfold, J. Self-Consistent Structural and Dynamic Study of Concentrated Micelle Solutions J. Chem. Soc., Faraday Trans. 1 1981, 77, 1851-1863
    • (1981) J. Chem. Soc., Faraday Trans. 1 , vol.77 , pp. 1851-1863
    • Hayter, J.B.1    Penfold, J.2
  • 80
    • 84961979135 scopus 로고    scopus 로고
    • 1-Octanol/Water Partition Coefficients of N -Alkanes from Molecular Simulations of Absolute Solvation Free
    • Garrido, N. M.; Queimada, A. J.; Jorge, M.; Macedo, E. A.; Economou, I. G. 1-Octanol/Water Partition Coefficients of N -Alkanes from Molecular Simulations of Absolute Solvation Free J. Chem. Theory Comput. 2009, 5, 2436-2446
    • (2009) J. Chem. Theory Comput. , vol.5 , pp. 2436-2446
    • Garrido, N.M.1    Queimada, A.J.2    Jorge, M.3    Macedo, E.A.4    Economou, I.G.5
  • 81
    • 18744387415 scopus 로고    scopus 로고
    • Potential Energy Functions for Atomic-Level Simulations of Water and Organic and Biomolecular Systems
    • Jorgensen, W. L.; Tirado-Rives, J. Potential Energy Functions for Atomic-Level Simulations of Water and Organic and Biomolecular Systems Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 6665-6670
    • (2005) Proc. Natl. Acad. Sci. U.S.A. , vol.102 , pp. 6665-6670
    • Jorgensen, W.L.1    Tirado-Rives, J.2
  • 82
    • 84883420384 scopus 로고    scopus 로고
    • Biomolecular Simulations with the Transferable Potentials for Phase Equilibria: Extension to Phospholipids
    • Bhatnagar, N.; Kamath, G.; Potoff, J. J. Biomolecular Simulations with the Transferable Potentials for Phase Equilibria: Extension to Phospholipids J. Phys. Chem. B 2013, 117, 9910-9921
    • (2013) J. Phys. Chem. B , vol.117 , pp. 9910-9921
    • Bhatnagar, N.1    Kamath, G.2    Potoff, J.J.3
  • 83
    • 0001684030 scopus 로고
    • Shape of Unperturbed Linear Polymers: Polypropylene
    • Theodorou, D. N.; Suter, U. W. Shape of Unperturbed Linear Polymers: Polypropylene Macromolecules 1985, 18, 1206-1214
    • (1985) Macromolecules , vol.18 , pp. 1206-1214
    • Theodorou, D.N.1    Suter, U.W.2
  • 84
    • 79961034753 scopus 로고    scopus 로고
    • Improved Measures for the Shape of a Disordered Polymer to Test a Mean-Field Theory of Collapse
    • Hadizadeh, S.; Linhananta, A.; Plotkin, S. S. Improved Measures for the Shape of a Disordered Polymer To Test a Mean-Field Theory of Collapse Macromolecules 2011, 44, 6182-6197
    • (2011) Macromolecules , vol.44 , pp. 6182-6197
    • Hadizadeh, S.1    Linhananta, A.2    Plotkin, S.S.3


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