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Volumn 9, Issue 3, 2014, Pages

Comparative genome analysis of Lactobacillus rhamnosus clinical isolates from initial stages of dental pulp infection: Identification of a new exopolysaccharide cluster

Author keywords

[No Author keywords available]

Indexed keywords

ABC TRANSPORTER; EXOPOLYSACCHARIDE; FERRIC ION; PHOSPHOTRANSFERASE; PROTEIN ARSR; PROTEIN CRO; PROTEIN MUTR; PROTEIN NTRC; REGULATOR PROTEIN; SIGMA FACTOR RPON; UNCLASSIFIED DRUG; ZINC BINDING PROTEIN; BACTERIAL POLYSACCHARIDE; BACTERIAL PROTEIN;

EID: 84898474940     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0090643     Document Type: Article
Times cited : (22)

References (48)
  • 3
    • 84861342868 scopus 로고    scopus 로고
    • Distinct and complex bacterial profiles in human periodontitis and health revealed by 16S pyrosequencing
    • Griffen AL, Beall CJ, Campbell JH, Firestone ND, Kumar PS, et al. (2012) Distinct and complex bacterial profiles in human periodontitis and health revealed by 16S pyrosequencing. The ISME journal 6:1176-1185.
    • (2012) The ISME Journal , vol.6 , pp. 1176-1185
    • Griffen, A.L.1    Beall, C.J.2    Campbell, J.H.3    Firestone, N.D.4    Kumar, P.S.5
  • 4
    • 77958056493 scopus 로고    scopus 로고
    • Analysis of oral microbiota in children with dental caries by PCR-DGGE and barcoded pyrosequencing
    • Ling Z, Kong J, Jia P, Wei C, Wang Y, et al. (2010) Analysis of oral microbiota in children with dental caries by PCR-DGGE and barcoded pyrosequencing. Microbial ecology 60:677-690.
    • (2010) Microbial Ecology , vol.60 , pp. 677-690
    • Ling, Z.1    Kong, J.2    Jia, P.3    Wei, C.4    Wang, Y.5
  • 5
    • 74949134895 scopus 로고    scopus 로고
    • Defining the healthy "core microbiome" of oral microbial communities
    • Zaura E, Keijser BJ, Huse SM, Crielaard W (2009) Defining the healthy "core microbiome" of oral microbial communities. BMC microbiology 9:259.
    • (2009) BMC Microbiology , vol.9 , pp. 259
    • Zaura, E.1    Keijser, B.J.2    Huse, S.M.3    Crielaard, W.4
  • 6
    • 77951864927 scopus 로고    scopus 로고
    • Lactobacilli are prominent in the initial stages of polymicrobial infection of dental pulp
    • Nadkarni MA, Simonian MR, Harty DW, Zoellner H, Jacques NA, et al. (2010) Lactobacilli are prominent in the initial stages of polymicrobial infection of dental pulp. J Clin Microbiol 48:1732-1740.
    • (2010) J Clin Microbiol , vol.48 , pp. 1732-1740
    • Nadkarni, M.A.1    Simonian, M.R.2    Harty, D.W.3    Zoellner, H.4    Jacques, N.A.5
  • 8
    • 84862276328 scopus 로고    scopus 로고
    • Structure, function and diversity of the healthy human microbiome
    • Huttenhower C, HMP Consortium (2012) Structure, function and diversity of the healthy human microbiome. Nature 486:207-214.
    • (2012) Nature , vol.486 , pp. 207-214
    • Huttenhower, C.1    Consortium, H.M.P.2
  • 9
    • 84995923579 scopus 로고    scopus 로고
    • Draft Genome Sequences of Two Clinical Isolates of Lactobacillus rhamnosus from Initial Stages of Dental Pulp Infection
    • Chen Z, Wilkins MR, Hunter N, Nadkarni MA (2013) Draft Genome Sequences of Two Clinical Isolates of Lactobacillus rhamnosus from Initial Stages of Dental Pulp Infection. Genome Announc 1.
    • (2013) Genome Announc , vol.1
    • Chen, Z.1    Wilkins, M.R.2    Hunter, N.3    Nadkarni, M.A.4
  • 11
    • 84858006569 scopus 로고    scopus 로고
    • Comparative genomics of Bifidobacterium, Lactobacillus and related probiotic genera
    • Lukjancenko O, Ussery DW, Wassenaar TM (2011) Comparative genomics of Bifidobacterium, Lactobacillus and related probiotic genera. Microbial ecology 63:651-673.
    • (2011) Microbial Ecology , vol.63 , pp. 651-673
    • Lukjancenko, O.1    Ussery, D.W.2    Wassenaar, T.M.3
  • 12
  • 15
    • 75149179714 scopus 로고    scopus 로고
    • Characterization of the CtsR stress response regulon in Lactobacillus plantarum
    • Fiocco D, Capozzi V, Collins M, Gallone A, Hols P, et al. (2009) Characterization of the CtsR stress response regulon in Lactobacillus plantarum. Journal of bacteriology 192:896-900.
    • (2009) Journal of Bacteriology , vol.192 , pp. 896-900
    • Fiocco, D.1    Capozzi, V.2    Collins, M.3    Gallone, A.4    Hols, P.5
  • 16
    • 37349047838 scopus 로고    scopus 로고
    • Phenotypic and transcriptomic analyses demonstrate interactions between the transcriptional regulators QsR and sigma B in Listeria monocytogenes
    • DOI 10.1128/AEM.01085-07
    • Hu Y, Raengpradub S, Schwab U, Loss C, Orsi RH, et al. (2007) Phenotypic and transcriptomic analyses demonstrate interactions between the transcriptional regulators CtsR and Sigma B in Listeria monocytogenes. Applied and environmental microbiology 73:7967-7980. (Pubitemid 350308814)
    • (2007) Applied and Environmental Microbiology , vol.73 , Issue.24 , pp. 7967-7980
    • Hu, Y.1    Raengpradub, S.2    Schwab, U.3    Loss, C.4    Orsi, R.H.5    Wiedmann, M.6    Boor, K.J.7
  • 17
    • 0034794091 scopus 로고    scopus 로고
    • Molecular organization and functionality of exopolysaccharide gene clusters in lactic acid bacteria
    • DOI 10.1016/S0958-6946(01)00117-0, PII S0958694601001170
    • Jolly L, Stingele F (2001) Molecular organization and functionality of exopolysaccharide gene clusters in lactic acid bacteria. International Dairy Journal 11:733-745. (Pubitemid 32965023)
    • (2001) International Dairy Journal , vol.11 , Issue.9 , pp. 733-745
    • Jolly, L.1    Stingele, F.2
  • 18
    • 66249147543 scopus 로고    scopus 로고
    • Identification of a Gene Cluster for the Biosynthesis of a Long, Galactose-Rich Exopolysaccharide in Lactobacillus rhamnosus GG and Functional Analysis of the Priming Glycosyltransferase
    • Lebeer S, Verhoeven TL, Francius G, Schoofs G, Lambrichts I, et al. (2009) Identification of a Gene Cluster for the Biosynthesis of a Long, Galactose-Rich Exopolysaccharide in Lactobacillus rhamnosus GG and Functional Analysis of the Priming Glycosyltransferase. Applied and environmental microbiology 75:3554-3563.
    • (2009) Applied and Environmental Microbiology , vol.75 , pp. 3554-3563
    • Lebeer, S.1    Verhoeven, T.L.2    Francius, G.3    Schoofs, G.4    Lambrichts, I.5
  • 19
    • 0038392792 scopus 로고    scopus 로고
    • Exopolysaccharides from lactic acid bacteria: Perspectives and challenges
    • DOI 10.1016/S0167-7799(03)00107-0
    • Welman AD, Maddox IS (2003) Exopolysaccharides from lactic acid bacteria: perspectives and challenges. Trends in biotechnology 21:269-274. (Pubitemid 36645214)
    • (2003) Trends in Biotechnology , vol.21 , Issue.6 , pp. 269-274
    • Welman, A.D.1    Maddox, I.S.2
  • 20
    • 0035725910 scopus 로고    scopus 로고
    • Biosynthesis, characterisation, and design of bacterial exopolysaccharides from lactic acid bacteria
    • DOI 10.1016/S0734-9750(01)00084-2, PII S0734975001000842
    • Laws A, Gu Y, Marshall V (2001) Biosynthesis, characterisation, and design of bacterial exopolysaccharides from lactic acid bacteria. Biotechnology advances 19:597-625. (Pubitemid 34212865)
    • (2001) Biotechnology Advances , vol.19 , Issue.8 , pp. 597-625
    • Laws, A.1    Gu, Y.2    Marshall, V.3
  • 21
    • 21344460056 scopus 로고    scopus 로고
    • Comparative analysis of the exopolysaccharide biosynthesis gene clusters from four strains of Lactobacillus rhamnosus
    • DOI 10.1099/mic.0.27852-0
    • Peant B, LaPointe G, Gilbert C, Atlan D, Ward P, et al. (2005) Comparative analysis of the exopolysaccharide biosynthesis gene clusters from four strains of Lactobacillus rhamnosus . Microbiology (Reading, England) 151:1839-1851. (Pubitemid 40909027)
    • (2005) Microbiology , vol.151 , Issue.6 , pp. 1839-1851
    • Peant, B.1    LaPointe, G.2    Gilbert, C.3    Atlan, D.4    Ward, P.5    Roy, D.6
  • 23
    • 0035118060 scopus 로고    scopus 로고
    • Molecular characterization of Streptococcus pneumoniae type 4, 6B, 8, and 18C capsular polysaccharide gene clusters
    • DOI 10.1128/IAI.69.3.1244-1255.2001
    • Jiang SM, Wang L, Reeves PR (2001) Molecular characterization of Streptococcus pneumoniae type 4, 6B, 8, and 18C capsular polysaccharide gene clusters. Infection and immunity 69:1244-1255. (Pubitemid 32187567)
    • (2001) Infection and Immunity , vol.69 , Issue.3 , pp. 1244-1255
    • Jiang, S.-M.1    Wang, L.2    Reeves, P.R.3
  • 24
    • 46049089600 scopus 로고    scopus 로고
    • The role of complex carbohydrate catabolism in the pathogenesis of invasive streptococci
    • Shelburne SA, Davenport MT, Keith DB, Musser JM (2008) The role of complex carbohydrate catabolism in the pathogenesis of invasive streptococci. Trends in microbiology 16:318-325.
    • (2008) Trends in Microbiology , vol.16 , pp. 318-325
    • Shelburne, S.A.1    Davenport, M.T.2    Keith, D.B.3    Musser, J.M.4
  • 25
    • 77949471116 scopus 로고    scopus 로고
    • The PTS transporters of Lactobacillus gasseri ATCC 33323
    • Francl AL, Thongaram T, Miller MJ (2010) The PTS transporters of Lactobacillus gasseri ATCC 33323. BMC microbiology 10:77.
    • (2010) BMC Microbiology , vol.10 , pp. 77
    • Francl, A.L.1    Thongaram, T.2    Miller, M.J.3
  • 27
    • 84867018919 scopus 로고    scopus 로고
    • Analysis of the Lactobacillus casei supragenome and its influence in species evolution and lifestyle adaptation
    • Broadbent JR, Neeno-Eckwall EC, Stahl B, Tandee K, Cai H, et al. (2012) Analysis of the Lactobacillus casei supragenome and its influence in species evolution and lifestyle adaptation. BMC genomics 13:533.
    • (2012) BMC Genomics , vol.13 , pp. 533
    • Broadbent, J.R.1    Neeno-Eckwall, E.C.2    Stahl, B.3    Tandee, K.4    Cai, H.5
  • 28
    • 39649109260 scopus 로고    scopus 로고
    • Maltose transport in Lactobacillus casei and its regulation by inducer exclusion
    • Monedero V, Yebra MJ, Poncet S, Deutscher J (2008) Maltose transport in Lactobacillus casei and its regulation by inducer exclusion. Research in microbiology 159:94-102.
    • (2008) Research in Microbiology , vol.159 , pp. 94-102
    • Monedero, V.1    Yebra, M.J.2    Poncet, S.3    Deutscher, J.4
  • 29
    • 44949249999 scopus 로고    scopus 로고
    • Structure, function, and evolution of bacterial ATP-binding cassette systems
    • DOI 10.1128/MMBR.00031-07
    • Davidson AL, Dassa E, Orelle C, Chen J (2008) Structure, function, and evolution of bacterial ATP-binding cassette systems. Microbiol Mol Biol Rev 72:317-364. (Pubitemid 351822295)
    • (2008) Microbiology and Molecular Biology Reviews , vol.72 , Issue.2 , pp. 317-364
    • Davidson, A.L.1    Dassa, E.2    Orelle, C.3    Chen, J.4
  • 30
    • 9244241532 scopus 로고    scopus 로고
    • ATP-binding cassette transporters are targets for the development of antibacterial vaccines and therapies
    • DOI 10.1128/IAI.72.12.6757-6763.2004
    • Garmory HS, Titball RW (2004) ATP-binding cassette transporters are targets for the development of antibacterial vaccines and therapies. Infection and immunity 72:6757-6763. (Pubitemid 39552342)
    • (2004) Infection and Immunity , vol.72 , Issue.12 , pp. 6757-6763
    • Garmory, H.S.1    Titball, R.W.2
  • 31
    • 25144434489 scopus 로고    scopus 로고
    • Antimicrobial peptide resistance mechanisms of human bacterial pathogens
    • Nizet V (2006) Antimicrobial peptide resistance mechanisms of human bacterial pathogens. Current issues in molecular biology 8:11-26.
    • (2006) Current Issues in Molecular Biology , vol.8 , pp. 11-26
    • Nizet, V.1
  • 32
    • 84867640103 scopus 로고    scopus 로고
    • Bacterial adhesion to animal tissues: Protein determinants for recognition of extracellular matrix components
    • Chagnot C, Listrat A, Astruc T, Desvaux M (2012) Bacterial adhesion to animal tissues: protein determinants for recognition of extracellular matrix components. Cellular microbiology 14:1687-1696.
    • (2012) Cellular Microbiology , vol.14 , pp. 1687-1696
    • Chagnot, C.1    Listrat, A.2    Astruc, T.3    Desvaux, M.4
  • 34
    • 0038249021 scopus 로고    scopus 로고
    • Influence of Enterococcus faecalis proteases and the collagen-binding protein, Ace, on adhesion to dentin
    • DOI 10.1034/j.1399-302X.2003.00059.x
    • Hubble TS, Hatton JF, Nallapareddy SR, Murray BE, Gillespie MJ (2003) Influence of Enterococcus faecalis proteases and the collagen-binding protein, Ace, on adhesion to dentin. Oral microbiology and immunology 18:121-126. (Pubitemid 36604367)
    • (2003) Oral Microbiology and Immunology , vol.18 , Issue.2 , pp. 121-126
    • Hubble, T.S.1    Hatton, J.F.2    Nallapareddy, S.R.3    Murray, B.E.4    Gillespie, M.J.5
  • 35
    • 79959427440 scopus 로고    scopus 로고
    • The collagen-binding protein Cnm is required for Streptococcus mutans adherence to and intracellular invasion of human coronary artery endothelial cells
    • Abranches J, Miller JH, Martinez AR, Simpson-Haidaris PJ, Burne RA, et al. (2011) The collagen-binding protein Cnm is required for Streptococcus mutans adherence to and intracellular invasion of human coronary artery endothelial cells. Infection and immunity 79:2277-2284.
    • (2011) Infection and Immunity , vol.79 , pp. 2277-2284
    • Abranches, J.1    Miller, J.H.2    Martinez, A.R.3    Simpson-Haidaris, P.J.4    Burne, R.A.5
  • 37
    • 70449441216 scopus 로고    scopus 로고
    • Molecular characterization of a novel Staphylococcus aureus surface protein (SasC) involved in cell aggregation and biofilm accumulation
    • Schroeder K, Jularic M, Horsburgh SM, Hirschhausen N, Neumann C, et al. (2009) Molecular characterization of a novel Staphylococcus aureus surface protein (SasC) involved in cell aggregation and biofilm accumulation. PloS one 4:e7567.
    • (2009) PloS One , vol.4
    • Schroeder, K.1    Jularic, M.2    Horsburgh, S.M.3    Hirschhausen, N.4    Neumann, C.5
  • 38
    • 0036892212 scopus 로고    scopus 로고
    • Identification of a fibronectin-binding protein from Staphylococcus epidermidis
    • DOI 10.1128/IAI.70.12.6805-6810.2002
    • Williams RJ, Henderson B, Sharp LJ, Nair SP (2002) Identification of a fibronectin-binding protein from Staphylococcus epidermidis. Infection and immunity 70:6805-6810. (Pubitemid 35387912)
    • (2002) Infection and Immunity , vol.70 , Issue.12 , pp. 6805-6810
    • Williams, R.J.1    Henderson, B.2    Sharp, L.J.3    Nair, S.P.4
  • 40
    • 0030830882 scopus 로고    scopus 로고
    • Internalin of Listeria monocytogenes with an intact leucine-rich repeat region is sufficient to promote internalization
    • Lecuit M, Ohayon H, Braun L, Mengaud J, Cossart P (1997) Internalin of Listeria monocytogenes with an intact leucine-rich repeat region is sufficient to promote internalization. Infection and immunity 65:5309-5319. (Pubitemid 27513585)
    • (1997) Infection and Immunity , vol.65 , Issue.12 , pp. 5309-5319
    • Lecuit, M.1    Ohayon, H.2    Braun, L.3    Mengaud, J.4    Cossart, P.5
  • 41
    • 77749296042 scopus 로고    scopus 로고
    • sigma54-Mediated control of the mannose phosphotransferase sytem in Lactobacillus plantarum impacts on carbohydrate metabolism
    • Stevens MJ, Molenaar D, de Jong A, De Vos WM, Kleerebezem M (2010) sigma54-Mediated control of the mannose phosphotransferase sytem in Lactobacillus plantarum impacts on carbohydrate metabolism. Microbiology 156:695-707.
    • (2010) Microbiology , vol.156 , pp. 695-707
    • Stevens, M.J.1    Molenaar, D.2    De Jong, A.3    De Vos, W.M.4    Kleerebezem, M.5
  • 42
    • 73749085106 scopus 로고    scopus 로고
    • Genome sequence and comparative genome analysis of Lactobacillus casei: Insights into their niche-associated evolution
    • Cai H, Thompson R, Budinich MF, Broadbent JR, Steele JL (2009) Genome sequence and comparative genome analysis of Lactobacillus casei: insights into their niche-associated evolution. Genome biology and evolution 1:239-257.
    • (2009) Genome Biology and Evolution , vol.1 , pp. 239-257
    • Cai, H.1    Thompson, R.2    Budinich, M.F.3    Broadbent, J.R.4    Steele, J.L.5
  • 44
    • 33846075967 scopus 로고    scopus 로고
    • Evolutionary genomics of lactic acid bacteria
    • DOI 10.1128/JB.01351-06
    • Makarova KS, Koonin EV (2007) Evolutionary genomics of lactic acid bacteria. Journal of bacteriology 189:1199-1208. (Pubitemid 46239741)
    • (2007) Journal of Bacteriology , vol.189 , Issue.4 , pp. 1199-1208
    • Makarova, K.S.1    Koonin, E.V.2
  • 45
    • 77952303422 scopus 로고    scopus 로고
    • How bacterial carbohydrates influence the adaptive immune system
    • Avci FY, Kasper DL (2010) How bacterial carbohydrates influence the adaptive immune system. Annual review of immunology 28:107-130.
    • (2010) Annual Review of Immunology , vol.28 , pp. 107-130
    • Avci, F.Y.1    Kasper, D.L.2
  • 46
    • 0032849859 scopus 로고    scopus 로고
    • CAP3: A DNA sequence assembly program
    • DOI 10.1101/gr.9.9.868
    • Huang X, Madan A (1999) CAP3: A DNA sequence assembly program. Genome research 9:868-877. (Pubitemid 29488446)
    • (1999) Genome Research , vol.9 , Issue.9 , pp. 868-877
    • Huang, X.1    Madan, A.2
  • 47
    • 18744372450 scopus 로고    scopus 로고
    • SNPsFinder - A web-based application for genome-wide discovery of single nucleotide polymorphisms in microbial genomes
    • DOI 10.1093/bioinformatics/bti176
    • Song J, Xu Y, White S, Miller KW, Wolinsky M (2005) SNPsFinder - a web-based application for genome-wide discovery of single nucleotide polymorphisms in microbial genomes. Bioinformatics (Oxford, England) 21:2083-2084. (Pubitemid 40668048)
    • (2005) Bioinformatics , vol.21 , Issue.9 , pp. 2083-2084
    • Song, J.1    Xu, Y.2    White, S.3    Miller, K.W.P.4    Wolinsky, M.5
  • 48
    • 14644438364 scopus 로고    scopus 로고
    • Circular genome visualization and exploration using CGView
    • DOI 10.1093/bioinformatics/bti054
    • Stothard P, Wishart DS (2005) Circular genome visualization and exploration using CGView. Bioinformatics (Oxford, England) 21:537-539. (Pubitemid 40310241) Research
    • (2005) Bioinformatics , vol.21 , Issue.4 , pp. 537-539
    • Stothard, P.1    Wishart, D.S.2


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