-
1
-
-
84880105471
-
Cysteine-mediated redox signaling: Chemistry, biology, and tools for discovery
-
C.E. Paulsen, and K.S. Carroll Cysteine-mediated redox signaling: chemistry, biology, and tools for discovery Chem. Rev. 113 2013 4633 4679
-
(2013)
Chem. Rev.
, vol.113
, pp. 4633-4679
-
-
Paulsen, C.E.1
Carroll, K.S.2
-
3
-
-
79954504166
-
Basic principles and emerging concepts in the redox control of transcription factors
-
R. Brigelius-Flohe, and L. Flohe Basic principles and emerging concepts in the redox control of transcription factors Antioxid. Redox Signal. 15 2011 2335 2381
-
(2011)
Antioxid. Redox Signal.
, vol.15
, pp. 2335-2381
-
-
Brigelius-Flohe, R.1
Flohe, L.2
-
4
-
-
75749136883
-
Signaling functions of reactive oxygen species
-
H.J. Forman, M. Maiorino, and F. Ursini Signaling functions of reactive oxygen species Biochemistry 49 2010 835 842
-
(2010)
Biochemistry
, vol.49
, pp. 835-842
-
-
Forman, H.J.1
Maiorino, M.2
Ursini, F.3
-
6
-
-
71549143840
-
Disulfides as redox switches: From molecular mechanisms to functional significance
-
M.A. Wouters, S.W. Fan, and N.L. Haworth Disulfides as redox switches: from molecular mechanisms to functional significance Antioxid. Redox Signal. 12 2010 53 91
-
(2010)
Antioxid. Redox Signal.
, vol.12
, pp. 53-91
-
-
Wouters, M.A.1
Fan, S.W.2
Haworth, N.L.3
-
7
-
-
43649090862
-
Diagonal gel electrophoresis
-
Chapter 8:Unit 8
-
Samelson, L. E. Diagonal gel electrophoresis. Curr. Protoc. Immunol. Chapter 8:Unit 8 6; 2001.
-
(2001)
Curr. Protoc. Immunol.
, vol.6
-
-
Samelson, L.E.1
-
8
-
-
77956198091
-
A rapid approach for the detection, quantification, and discovery of novel sulfenic acid or S-nitrosothiol modified proteins using a biotin-switch method
-
J.R. Burgoyne, and P. Eaton A rapid approach for the detection, quantification, and discovery of novel sulfenic acid or S-nitrosothiol modified proteins using a biotin-switch method Methods Enzymol. 473 2010 281 303
-
(2010)
Methods Enzymol.
, vol.473
, pp. 281-303
-
-
Burgoyne, J.R.1
Eaton, P.2
-
9
-
-
77956210418
-
Identification by MS/MS of disulfides produced by a functional redox transition
-
P. Mauri, S. Toppo, A. De Palma, L. Benazzi, M. Maiorino, and F. Ursini Identification by MS/MS of disulfides produced by a functional redox transition Methods Enzymol. 473 2010 217 225
-
(2010)
Methods Enzymol.
, vol.473
, pp. 217-225
-
-
Mauri, P.1
Toppo, S.2
De Palma, A.3
Benazzi, L.4
Maiorino, M.5
Ursini, F.6
-
10
-
-
46149125288
-
Quantifying changes in the thiol redox proteome upon oxidative stress in vivo
-
DOI 10.1073/pnas.0707723105
-
L.I. Leichert, F. Gehrke, H.V. Gudiseva, T. Blackwell, M. Ilbert, A.K. Walker, J.R. Strahler, P.C. Andrews, and U. Jakob Quantifying changes in the thiol redox proteome upon oxidative stress in vivo Proc. Natl. Acad. Sci. USA 105 2008 8197 8202 (Pubitemid 351904734)
-
(2008)
Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, Issue.24
, pp. 8197-8202
-
-
Leichert, L.I.1
Gehrke, F.2
Gudiseva, H.V.3
Blackwell, T.4
Ilbert, M.5
Walker, A.K.6
Strahler, J.R.7
Andrews, P.C.8
Jakob, U.9
-
11
-
-
79551500036
-
Less label, more free: Approaches in label-free quantitative mass spectrometry
-
K.A. Neilson, N.A. Ali, S. Muralidharan, M. Mirzaei, M. Mariani, G. Assadourian, A. Lee, S.C. van Sluyter, and P.A. Haynes Less label, more free: approaches in label-free quantitative mass spectrometry Proteomics 11 2011 535 553
-
(2011)
Proteomics
, vol.11
, pp. 535-553
-
-
Neilson, K.A.1
Ali, N.A.2
Muralidharan, S.3
Mirzaei, M.4
Mariani, M.5
Assadourian, G.6
Lee, A.7
Van Sluyter, S.C.8
Haynes, P.A.9
-
12
-
-
0029095032
-
Functional link between phosphorylation state of membrane proteins and morphological changes of human erythrocytes
-
L. Bordin, G. Clari, I. Moro, F. Dalla Vecchia, and V. Moret Functional link between phosphorylation state of membrane proteins and morphological changes of human erythrocytes Biochem. Biophys. Res. Commun. 213 1995 249 257
-
(1995)
Biochem. Biophys. Res. Commun.
, vol.213
, pp. 249-257
-
-
Bordin, L.1
Clari, G.2
Moro, I.3
Dalla Vecchia, F.4
Moret, V.5
-
13
-
-
0029006990
-
Diamide: An oxidant probe for thiols
-
N.S. Kosower, and E.M. Kosower Diamide: an oxidant probe for thiols Methods Enzymol. 251 1995 123 133
-
(1995)
Methods Enzymol.
, vol.251
, pp. 123-133
-
-
Kosower, N.S.1
Kosower, E.M.2
-
14
-
-
0031005935
-
Erythrocyte thiol status regulates band 3 phosphotyrosine level via oxidation/reduction of band 3-associated phosphotyrosine phosphatase
-
DOI 10.1016/S0014-5793(97)00263-9, PII S0014579397002639
-
Y. Zipser, A. Piade, and N.S. Kosower Erythrocyte thiol status regulates band 3 phosphotyrosine level via oxidation/reduction of band 3-associated phosphotyrosine phosphatase FEBS Lett. 406 1997 126 130 (Pubitemid 27156973)
-
(1997)
FEBS Letters
, vol.406
, Issue.1-2
, pp. 126-130
-
-
Zipser, Y.1
Piade, A.2
Kosower, N.S.3
-
15
-
-
0017184389
-
A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding
-
M.M. Bradford A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding Anal. Biochem. 72 1976 248 254
-
(1976)
Anal. Biochem.
, vol.72
, pp. 248-254
-
-
Bradford, M.M.1
-
16
-
-
33744543755
-
The Saccharomyces cerevisiae proteome of oxidized protein thiols: Contrasted functions for the thioredoxin and glutathione pathways
-
DOI 10.1074/jbc.M513346200
-
N. Le Moan, G. Clement, S. Le Maout, F. Tacnet, and M.B. Toledano The Saccharomyces cerevisiae proteome of oxidized protein thiols: contrasted functions for the thioredoxin and glutathione pathways J. Biol. Chem. 281 2006 10420 10430 (Pubitemid 43864581)
-
(2006)
Journal of Biological Chemistry
, vol.281
, Issue.15
, pp. 10420-10430
-
-
Le Moan, N.1
Clement, G.2
Le Maout, S.3
Tacnet, F.4
Toledano, M.B.5
-
17
-
-
42249108173
-
OpenMS - An open-source software framework for mass spectrometry
-
M. Sturm, A. Bertsch, C. Gropl, A. Hildebrandt, R. Hussong, E. Lange, N. Pfeifer, O. Schulz-Trieglaff, A. Zerck, K. Reinert, and O. Kohlbacher OpenMS - an open-source software framework for mass spectrometry BMC Bioinformatics 9 2008 163
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 163
-
-
Sturm, M.1
Bertsch, A.2
Gropl, C.3
Hildebrandt, A.4
Hussong, R.5
Lange, E.6
Pfeifer, N.7
Schulz-Trieglaff, O.8
Zerck, A.9
Reinert, K.10
Kohlbacher, O.11
-
18
-
-
77449106982
-
OpenMS and TOPP: Open source software for LC-MS data analysis
-
K. Reinert, and O. Kohlbacher OpenMS and TOPP: open source software for LC-MS data analysis Methods Mol. Biol. 604 2010 201 211
-
(2010)
Methods Mol. Biol.
, vol.604
, pp. 201-211
-
-
Reinert, K.1
Kohlbacher, O.2
-
19
-
-
84875928072
-
An automated pipeline for high-throughput label-free quantitative proteomics
-
Weisser, H.; Nahnsen, S.; Grossmann, J.; Nilse, L.; Quandt, A.; Brauer, H.; Sturm, M.; Kenar, E.; Kohlbacher, O.; Aebersold, R.; Malmstrom, L. An automated pipeline for high-throughput label-free quantitative proteomics. J. Proteome Res.; 2013.
-
(2013)
J. Proteome Res.
-
-
Weisser, H.1
Nahnsen, S.2
Grossmann, J.3
Nilse, L.4
Quandt, A.5
Brauer, H.6
Sturm, M.7
Kenar, E.8
Kohlbacher, O.9
Aebersold, R.10
Malmstrom, L.11
-
20
-
-
0033434080
-
Probability-based protein identification by searching sequence databases using mass spectrometry data
-
D.N. Perkins, D.J. Pappin, D.M. Creasy, and J.S. Cottrell Probability-based protein identification by searching sequence databases using mass spectrometry data Electrophoresis 20 1999 3551 3567 (Pubitemid 30007252)
-
(1999)
Electrophoresis
, vol.20
, Issue.18
, pp. 3551-3567
-
-
Perkins, D.N.1
Pappin, D.J.C.2
Creasy, D.M.3
Cottrell, J.S.4
-
21
-
-
7044246160
-
Open mass spectrometry search algorithm
-
DOI 10.1021/pr0499491
-
L.Y. Geer, S.P. Markey, J.A. Kowalak, L. Wagner, M. Xu, D.M. Maynard, X. Yang, W. Shi, and S.H. Bryant Open mass spectrometry search algorithm J. Proteome Res. 3 2004 958 964 (Pubitemid 39425651)
-
(2004)
Journal of Proteome Research
, vol.3
, Issue.5
, pp. 958-964
-
-
Geer, L.Y.1
Markey, S.P.2
Kowalak, J.A.3
Wagner, L.4
Xu, M.5
Maynard, D.M.6
Yang, X.7
Shi, W.8
Bryant, S.H.9
-
22
-
-
3142702204
-
TANDEM: Matching proteins with tandem mass spectra
-
DOI 10.1093/bioinformatics/bth092
-
R. Craig, and R.C. Beavis TANDEM: matching proteins with tandem mass spectra Bioinformatics 20 2004 1466 1467 (Pubitemid 38931421)
-
(2004)
Bioinformatics
, vol.20
, Issue.9
, pp. 1466-1467
-
-
Craig, R.1
Beavis, R.C.2
-
24
-
-
84878051310
-
Statistical protein quantification and significance analysis in label-free LC-MS experiments with complex designs
-
T. Clough, S. Thaminy, S. Ragg, R. Aebersold, and O. Vitek Statistical protein quantification and significance analysis in label-free LC-MS experiments with complex designs BMC Bioinformatics 13 Suppl. 16 2012 S6
-
(2012)
BMC Bioinformatics
, vol.13
, Issue.SUPPL. 16
, pp. 6
-
-
Clough, T.1
Thaminy, S.2
Ragg, S.3
Aebersold, R.4
Vitek, O.5
-
25
-
-
0035147435
-
Protein S-nitrosylation: A physiological signal for neuronal nitric oxide
-
DOI 10.1038/35055104
-
S.R. Jaffrey, H. Erdjument-Bromage, C.D. Ferris, P. Tempst, and S.H. Snyder Protein S-nitrosylation: a physiological signal for neuronal nitric oxide Nat. Cell Biol. 3 2001 193 197 (Pubitemid 32118373)
-
(2001)
Nature Cell Biology
, vol.3
, Issue.2
, pp. 193-197
-
-
Jaffrey, S.R.1
Erdjument-Bromage, H.2
Ferris, C.D.3
Tempst, P.4
Snyder, S.H.5
-
26
-
-
0035849715
-
The biotin switch method for the detection of S-nitrosylated proteins
-
Jaffrey, S. R.; Snyder, S. H. The biotin switch method for the detection of S-nitrosylated proteins. Sci. STKE 2001:pl1; 2001.
-
(2001)
Sci. STKE 2001
-
-
Jaffrey S., .R.1
Snyder S., .H.2
-
27
-
-
63649159793
-
Shotgun redox proteomics identifies specifically modified cysteines in key metabolic enzymes under oxidative stress in Saccharomyces cerevisiae
-
B. McDonagh, S. Ogueta, G. Lasarte, C.A. Padilla, and J.A. Barcena Shotgun redox proteomics identifies specifically modified cysteines in key metabolic enzymes under oxidative stress in Saccharomyces cerevisiae J. Proteomics 72 2009 677 689
-
(2009)
J. Proteomics
, vol.72
, pp. 677-689
-
-
McDonagh, B.1
Ogueta, S.2
Lasarte, G.3
Padilla, C.A.4
Barcena, J.A.5
-
28
-
-
84867045160
-
Current challenges in software solutions for mass spectrometry-based quantitative proteomics
-
S. Cappadona, P.R. Baker, P.R. Cutillas, A.J. Heck, and B. van Breukelen Current challenges in software solutions for mass spectrometry-based quantitative proteomics Amino Acids 43 2012 1087 1108
-
(2012)
Amino Acids
, vol.43
, pp. 1087-1108
-
-
Cappadona, S.1
Baker, P.R.2
Cutillas, P.R.3
Heck, A.J.4
Van Breukelen, B.5
-
29
-
-
33750615386
-
PEPPeR, a platform for experimental proteomic pattern recognition
-
DOI 10.1074/mcp.M600222-MCP200
-
J.D. Jaffe, D.R. Mani, K.C. Leptos, G.M. Church, M.A. Gillette, and S.A. Carr PEPPeR, a platform for experimental proteomic pattern recognition Mol. Cell. Proteomics 5 2006 1927 1941 (Pubitemid 44688201)
-
(2006)
Molecular and Cellular Proteomics
, vol.5
, Issue.10
, pp. 1927-1941
-
-
Jaffe, J.D.1
Mani, D.R.2
Leptos, K.C.3
Church, G.M.4
Gillette, M.A.5
Carr, S.A.6
-
30
-
-
34848819400
-
Comparative evaluation of tandem MS search algorithms using a target-decoy search stategy
-
DOI 10.1074/mcp.M600469-MCP200
-
B.M. Balgley, T. Laudeman, L. Yang, T. Song, and C.S. Lee Comparative evaluation of tandem MS search algorithms using a target-decoy search strategy Mol. Cell. Proteomics 6 2007 1599 1608 (Pubitemid 47506170)
-
(2007)
Molecular and Cellular Proteomics
, vol.6
, Issue.9
, pp. 1599-1608
-
-
Balgley, B.M.1
Laudeman, T.2
Yang, L.3
Song, T.4
Lee, C.S.5
-
31
-
-
34248152120
-
Mass spectrometry data analysis in the proteomics era
-
F. Forner, L.J. Foster, and S. Toppo Mass spectrometry data analysis in the proteomics era Curr. Bioinformatics 2 2007 63 93 (Pubitemid 46723125)
-
(2007)
Current Bioinformatics
, vol.2
, Issue.1
, pp. 63-93
-
-
Forner, F.1
Foster, L.J.2
Toppo, S.3
-
32
-
-
33847630405
-
Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry
-
DOI 10.1038/nmeth1019, PII NMETH1019
-
J.E. Elias, and S.P. Gygi Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry Nat. Methods 4 2007 207 214 (Pubitemid 46358868)
-
(2007)
Nature Methods
, vol.4
, Issue.3
, pp. 207-214
-
-
Elias, J.E.1
Gygi, S.P.2
-
33
-
-
77957221582
-
A survey of computational methods and error rate estimation procedures for peptide and protein identification in shotgun proteomics
-
A.I. Nesvizhskii A survey of computational methods and error rate estimation procedures for peptide and protein identification in shotgun proteomics J. Proteomics 73 2010 2092 2123
-
(2010)
J. Proteomics
, vol.73
, pp. 2092-2123
-
-
Nesvizhskii, A.I.1
-
34
-
-
79953719716
-
More than 100,000 detectable peptide species elute in single shotgun proteomics runs but the majority is inaccessible to data-dependent LC-MS/MS
-
A. Michalski, J. Cox, and M. Mann More than 100,000 detectable peptide species elute in single shotgun proteomics runs but the majority is inaccessible to data-dependent LC-MS/MS J. Proteome Res. 10 2011 1785 1793
-
(2011)
J. Proteome Res.
, vol.10
, pp. 1785-1793
-
-
Michalski, A.1
Cox, J.2
Mann, M.3
-
35
-
-
84861788632
-
Oxidative stress and caspase-mediated fragmentation of cytoplasmic domain of erythrocyte band 3 during blood storage
-
S. Rinalducci, E. Ferru, B. Blasi, F. Turrini, and L. Zolla Oxidative stress and caspase-mediated fragmentation of cytoplasmic domain of erythrocyte band 3 during blood storage Blood Transfus 10 Suppl. 2 2012 s55 s62
-
(2012)
Blood Transfus
, vol.10
, Issue.SUPPL. 2
-
-
Rinalducci, S.1
Ferru, E.2
Blasi, B.3
Turrini, F.4
Zolla, L.5
-
36
-
-
0019309226
-
Human erythrocyte ankyrin. Purification and properties
-
V. Bennett, and P.J. Stenbuck Human erythrocyte ankyrin. Purification and properties J. Biol. Chem. 255 1980 2540 2548 (Pubitemid 10036053)
-
(1980)
Journal of Biological Chemistry
, vol.255
, Issue.6
, pp. 2540-2548
-
-
Bennett, V.1
Stenbuck, P.J.2
-
37
-
-
0019321291
-
Association between ankyrin and the cytoplasmic domain of band 3 isolated from the human erythrocyte membrane
-
V. Bennett, and P.J. Stenbuck Association between ankyrin and the cytoplasmic domain of band 3 isolated from the human erythrocyte membrane J. Biol. Chem. 255 1980 6424 6432
-
(1980)
J. Biol. Chem.
, vol.255
, pp. 6424-6432
-
-
Bennett, V.1
Stenbuck, P.J.2
-
38
-
-
33750803208
-
Membrane skeletal protein S-glutathionylation and hemolysis in human red blood cells
-
DOI 10.1016/j.bcmd.2006.09.003, PII S1079979606001975
-
R. Rossi, D. Giustarini, A. Milzani, and I. Dalle-Donne Membrane skeletal protein S-glutathionylation and hemolysis in human red blood cells Blood Cells Mol. Dis. 37 2006 180 187 (Pubitemid 44716720)
-
(2006)
Blood Cells, Molecules, and Diseases
, vol.37
, Issue.3
, pp. 180-187
-
-
Rossi, R.1
Giustarini, D.2
Milzani, A.3
Dalle-Donne, I.4
-
39
-
-
0027288548
-
Human erythrocyte membrane protein band 4.2 (pallidin)
-
C.M. Cohen, E. Dotimas, and C. Korsgren Human erythrocyte membrane protein band 4.2 (pallidin) Semin. Hematol. 30 1993 119 137 (Pubitemid 23127883)
-
(1993)
Seminars in Hematology
, vol.30
, Issue.2
, pp. 119-137
-
-
Cohen, C.M.1
Dotimas, E.2
Korsgren, C.3
-
40
-
-
0343471501
-
Cytoskeleton-membrane connections in the human erythrocyte membrane: Band 4.1 binds to tetrameric band 3 protein
-
DOI 10.1016/S0005-2736(96)00261-1, PII S0005273696002611
-
B. von Ruckmann, T. Jons, F. Dolle, D. Drenckhahn, and D. Schubert Cytoskeleton-membrane connections in the human erythrocyte membrane: band 4.1 binds to tetrameric band 3 protein Biochim. Biophys. Acta 1325 1997 226 234 (Pubitemid 27193278)
-
(1997)
Biochimica et Biophysica Acta - Biomembranes
, vol.1325
, Issue.2
, pp. 226-234
-
-
Von Ruckmann, B.1
Jons, T.2
Dolle, F.3
Drenckhahn, D.4
Schubert, D.5
-
41
-
-
0024549766
-
Association of glyceraldehyde-3-phosphate dehydrogenase with the plasma membrane of the intact human red blood cell
-
A.A. Rogalski, T.L. Steck, and A. Waseem Association of glyceraldehyde-3-phosphate dehydrogenase with the plasma membrane of the intact human red blood cell J. Biol. Chem. 264 1989 6438 6446 (Pubitemid 19106727)
-
(1989)
Journal of Biological Chemistry
, vol.264
, Issue.11
, pp. 6438-6446
-
-
Rogalski, A.A.1
Steck, T.L.2
Waseem, A.3
-
42
-
-
0021260876
-
The interaction of hemoglobin with the cytoplasmic domain of band 3 of the human erythrocyte membrane
-
J.A. Walder, R. Chatterjee, T.L. Steck, P.S. Low, G.F. Musso, E.T. Kaiser, P.H. Rogers, and A. Arnone The interaction of hemoglobin with the cytoplasmic domain of band 3 of the human erythrocyte membrane J. Biol. Chem. 259 1984 10238 10246 (Pubitemid 14065325)
-
(1984)
Journal of Biological Chemistry
, vol.259
, Issue.16
, pp. 10238-10246
-
-
Walder, J.A.1
Chatterjee, R.2
Steck, T.L.3
-
43
-
-
0021914417
-
Hemichrome binding to band 3: Nucleation of Heinz bodies on the erythrocyte membrane
-
DOI 10.1021/bi00322a006
-
S.M. Waugh, and P.S. Low Hemichrome binding to band 3: nucleation of Heinz bodies on the erythrocyte membrane Biochemistry 24 1985 34 39 (Pubitemid 15130395)
-
(1985)
Biochemistry
, vol.24
, Issue.1
, pp. 34-39
-
-
Waugh, S.M.1
Low, P.S.2
-
44
-
-
77954144286
-
Peroxiredoxin-2 expression is increased in beta-thalassemic mouse red cells but is displaced from the membrane as a marker of oxidative stress
-
A. Matte, P.S. Low, F. Turrini, M. Bertoldi, M.E. Campanella, D. Spano, A. Pantaleo, A. Siciliano, and L. De Franceschi Peroxiredoxin-2 expression is increased in beta-thalassemic mouse red cells but is displaced from the membrane as a marker of oxidative stress Free Radic. Biol. Med. 49 2010 457 466.
-
(2010)
Free Radic. Biol. Med.
, vol.49
, pp. 457-466
-
-
Matte, A.1
Low, P.S.2
Turrini, F.3
Bertoldi, M.4
Campanella, M.E.5
Spano, D.6
Pantaleo, A.7
Siciliano, A.8
De Franceschi, L.9
|