Quantification of small-scale variation in the size and composition of phenanthrene-degrader populations and PAH contaminants in traffic-impacted topsoil

FEMS Microbiology Ecology

Volumn 88, Issue 1, 2014, Pages 84-93

  Johnsen, Anders R ^a   Styrishave, Bjarne ^b   Aamand, Jens ^a  

^a GEOLOGICAL SURVEY OF DENMARK AND GREENLAND   (Denmark)

^b UNIVERSITY OF COPENHAGEN   (Denmark)

Author keywords

MPN; Nycodenz; RHD ; Simpson's evenness index; Spatial structure; Variogram

Indexed keywords

BACTERIUM; BIODEGRADATION; HETEROTROPHY; PAH; PHENANTHRENE; POLLUTANT; POLYMERASE CHAIN REACTION; POPULATION STRUCTURE; SIZE; SOIL DEGRADATION; SOIL MICROORGANISM; SPATIAL DISTRIBUTION; SPATIAL RESOLUTION; TOPSOIL; VARIOGRAM;

BACTERIA (MICROORGANISMS);

DIOXYGENASE; IOHEXOL; PHENANTHRENE; PHENANTHRENE DERIVATIVE;

ARTICLE; BACTERIUM; BIOREMEDIATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; METABOLISM; MICROBIOLOGY; MPN; RHDΑ; SIMPSON'S EVENNESS INDEX; SOIL POLLUTANT; SPATIAL STRUCTURE; VARIOGRAM;

MPN; NYCODENZ; RHDΑ; SIMPSON'S EVENNESS INDEX; SPATIAL STRUCTURE; VARIOGRAM;

BACTERIA; BIODEGRADATION, ENVIRONMENTAL; DIOXYGENASES; PHENANTHRENES; SOIL MICROBIOLOGY; SOIL POLLUTANTS;

EID: 84898058426     PISSN: 01686496     EISSN: 15746941     Source Type: Journal    
DOI: 10.1111/1574-6941.12272     Document Type: Article

References (27)

1. Amellal N, Portal J-M, Vogel T & Berthelin J (2001) Distribution and location of polycyclic aromatic hydrocarbons (PAHs) and PAH.-degrading bacteria within polluted soil aggregates. Biodegradation 12: 49-57.
2. Andersson J & Schräder W (1999) A method for measuring 1-octanol-water partition coefficients. Anal Chem 71: 3610-3614.
3. Badawi N, Johnsen AR, Brandt KK, Sørensen J & Aamand J (2012) Protozoan predation compromises determination of contaminant mineralization potential. Environ Pollut 170: 32-38.
4. Baldwin BR, Nakatsu CH & Nies L (2003) Detection and enumeration of aromatic oxygenase genes by multiplex and real-time PCR. Appl Environ Microbiol 69: 3350-3358.
5. Bengtsson G, Törneman N, DeLipthay JR & Sørensen SJ (2013) Microbial diversity and PAH catabolic genes tracking spatial heterogeneity of PAH concentrations. Microb Ecol 65: 91-100.
6. Bushnell HD & Haas HF (1941) The utilization of certain hydrocarbons by microorganisms. J Bacteriol 41: 653-673.
7. α) genes from Gram positive and Gram negative bacteria in soil and sediment samples. J Microbiol Methods 73: 148-159.
8. Dunn NW & Gunsalus IC (1973) Transmissible plasmid coding early enzymes of naphthalene oxidation in Pseudomonas putida. J Bacteriol 114: 974-979.
9. Harms H & Bosma TNP (1997) Mass transfer limitation of microbial growth and pollutant degradation. J Ind Microbiol Biotechnol 18: 97-105.
10. Hurley M & Roscoe M (1983) Automated statistical analysis of microbial enumeration by dilution series. J Appl Bacteriol 55: 159-164.
11. Hybholt TK, Aamand J & Johnsen AR (2011) Quantification of centimeter-scale spatial variation in PAH, glucose and benzoic acid mineralization and soil organic matter in road-side soil. Environ Pollut 159: 1085-1091.
12. Johnsen AR & Karlson U (2005) PAH degradation capacity of soil microbial communities - does it depend on exposure? Microb Ecol 50: 488-494.
13. Johnsen AR & Karlson U (2007) Diffuse PAH contamination of surface soils: environmental occurrence, bioavailability, and microbial degradation. Appl Microbiol Biotechnol 76: 533-543.
14. Johnsen AR, Wick LY & Harms H (2005) Principles of microbial PAH-degradation in soil. Environ Pollut 133: 71-84.
15. Johnsen AR, de Lipthay JR, Sørensen SJ, Ekelund F, Christensen P, Andersen O, Karlson U & Jacobsen CS (2006a) Microbial degradation of street dust PAHs in microcosms simulating diffuse pollution of urban soil. Environ Microbiol 8: 535-545.
16. Johnsen AR, de Lipthay JR, Reichenberg F, Sørensen SJ, Andersen O, Christensen P, Binderup ML & Jacobsen CS (2006b) Biodegradation, bioaccessibility and genotoxicity of diffuse polycyclic aromatic hydrocarbon (PAH) pollution at a motorway site. Environ Sci Technol 40: 3293-3298.
17. 14C]-compounds in a 96-well microplate format. J Microbiol Meth 79: 114-116.
18. Kaune A, Knorrenschild M & Kettrup A (1995) Predicting 1-octanol-water partition coefficient by high-performance liquid chromatography gradient elution. Fresenius J Anal Chem 352: 303-312.
19. Krivobok S, Kuony S, Meyer C, Louwagie M, Willison JC & Jouanneau Y (2003) Identification of pyrene-induced proteins in Mycobacterium sp. strain 6PY1: evidence for two ring-hydroxylating dioxygenases. J Bacteriol 185: 3828-3841.
20. Matheron G (1963) Principles of geostatistics. Econ Geol 58: 1246-1266.
21. Murakami M, Nakajima F & Furumai H (2005) Size- and density-distributions and sources of polycyclic aromatic hydrocarbons in urban road dust. Chemosphere 61: 783-791.
22. Payne LX, Schindler DE, Parrish JK & Temple SA (2005) Quantifying spatial patterns with evenness indices. Ecol Appl 15: 507-520.
23. Rønn R, Grunert J & Ekelund F (2001) Protozoan response to addition of the bacteria Mycobacterium chlorophenolicum and Pseudomonas chlororaphis to soil microcosms. Biol Fertil Soils 33: 126-131.
24. Simpson EH (1949) Measurement of diversity. Nature 163: 688.
25. Styrishave B, Björklund E, Johnsen A & Halling-Sørensen B (2012) The spatial heterogeneity of polycyclic aromatic hydrocarbons in soil depends on their physico-chemical properties. Water Air Soil Pollut 223: 969-977.
26. Takizawa N, Kaida N, Torigoe S, Moritani T, Sawada T, Satoh S & Kiyohara H (1994) Identification and characterization of genes encoding polycyclic aromatic hydrocarbon dioxygenase and polycyclic aromatic hydrocarbon dihydrodiol dehydrogenase in Pseudomonas putida OUS82. J Bacteriol 176: 2444-2449.
27. Uyttebroek M, Breugelmans P, Janssen M et al. (2006) Distribution of the Mycobacterium community and polycyclic aromatic hydrocarbons (PAHs) among different size fractions of a long-term PAH-contaminated soil. Environ Microbiol 8: 836-847.