Extracellular membrane vesicles harbouring viral genomes

Environmental Microbiology

Volumn 16, Issue 4, 2014, Pages 1167-1175

  Gaudin, Marie ^a   Krupovic, Mart ^b   Marguet, Evelyne ^a   Gauliard, Emilie ^a   Cvirkaite Krupovic, Virginija ^a   Le Cam, Eric ^c   Oberto, Jacques ^a   Forterre, Patrick ^a,b  

^a INSTITUTE FOR INTEGRATIVE BIOLOGY OF THE CELL I2BC   (France)

^b INSTITUT PASTEUR   (France)

^c UMR 8126   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ARCHAEA; MIRIDAE; NAUTILUS; THERMOCOCCALES; THERMOCOCCUS; THERMOCOCCUS KODAKARENSIS;

VIRUS DNA; VIRUS PROTEIN;

ARTICLE; CELL MEMBRANE; DNA SEQUENCE; GENETICS; METABOLISM; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PLASMID; THERMOCOCCUS; TRANSPORT AT THE CELLULAR LEVEL; VIROLOGY; VIRUS GENOME;

BIOLOGICAL TRANSPORT; CELL MEMBRANE; DNA, VIRAL; GENOME, VIRAL; MOLECULAR SEQUENCE DATA; PLASMIDS; SEQUENCE ANALYSIS, DNA; THERMOCOCCUS; VIRAL PROTEINS;

EID: 84898058133     PISSN: 14622912     EISSN: 14622920     Source Type: Journal    
DOI: 10.1111/1462-2920.12235     Document Type: Article

References (50)

1. Beloin, C., Jeusset, J., Revet, B., Mirambeau, G., Le Hegarat, F., and Le Cam, E. (2003) Contribution of DNA conformation and topology in right-handed DNA wrapping by the Bacillus subtilis LrpC protein. J Biol Chem 278: 5333-5342.
2. Berleman, J., and Auer, M. (2013) The role of bacterial outer membrane vesicles for intra- and interspecies delivery. Environ Microbiol 15: 347-354.
3. Charbonnier, F., Erauso, G., Barbeyron, T., Prieur, D., and Forterre, P. (1992) Evidence that a plasmid from a hyperthermophilic archaebacterium is relaxed at physiological temperatures. J Bacteriol 174: 6103-6108.
4. Deatherage, B.L., and Cookson, B.T. (2012) Membrane vesicle release in bacteria, eukaryotes, and archaea: a conserved yet underappreciated aspect of microbial life. Infect Immun 80: 1948-1957.
5. Dorward, D.W., Garon, C.F., and Judd, R.C. (1989) Export and intercellular transfer of DNA via membrane blebs of Neisseria gonorrhoeae. J Bacteriol 171: 2499-2505.
6. Forterre, P., and Krupovic, M. (2012) The origin of virions and virocells: the Escape hypothesis revisited. In Viruses: Essential Agents of Life. Witzany, G. (ed.). Dordrecht, the Netherlands: Springer, pp. 43-60.
7. Forterre, P., Soler, N., Krupovic, M., Marguet, E., and Ackermann, H.W. (2013) Fake virus particles generated by fluorescence microscopy. Trends Microbiol 21: 1-5.
8. Fukui, T., Atomi, H., Kanai, T., Matsumi, R., Fujiwara, S., and Imanaka, T. (2005) Complete genome sequence of the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1 and comparison with Pyrococcus genomes. Genome Res 15: 352-363.
9. Gaudin, M., Gauliard, E., Le Normand, P., Marguet, E., and Forterre, P. (2013) Hyperthermophilic archaea produce vesicles that can transfer DNA. Environ Microbiol Rep 5: 109-116.
10. Geslin, C., Gaillard, M., Flament, D., Rouault, K., Le Romancer, M., Prieur, D., and Erauso, G. (2007) Analysis of the first genome of a hyperthermophilic marine virus-like particle, PAV1, isolated from Pyrococcus abyssi. J Bacteriol 189: 4510-4519.
11. Gorlas, A., Koonin, E.V., Bienvenu, N., Prieur, D., and Geslin, C. (2012) TPV1, the first virus isolated from the hyperthermophilic genus Thermococcus. Environ Microbiol 14: 503-516.
12. Gorlas, A., Krupovic, M., Forterre, P., and Geslin, C. (2013) Living side by side with a virus: characterization of two novel plasmids from Thermococcus prieurii, a host for the spindle-shaped virus TPV1. Appl Environ Microbiol 79: 3822-3828.
13. Gyorgy, B., Szabo, T.G., Pasztoi, M., Pal, Z., Misjak, P., Aradi, B., etal. (2011) Membrane vesicles, current state-of-the-art: emerging role of extracellular vesicles. Cell Mol Life Sci 68: 2667-2688.
14. Iyer, L.M., Makarova, K.S., Koonin, E.V., and Aravind, L. (2004) Comparative genomics of the FtsK-HerA superfamily of pumping ATPases: implications for the origins of chromosome segregation, cell division and viral capsid packaging. Nucleic Acids Res 32: 5260-5279.
15. Izquierdo-Useros, N., Puertas, M.C., Borras, F.E., Blanco, J., and Martinez-Picado, J. (2011) Exosomes and retroviruses: the chicken or the egg? Cell Microbiol 13: 10-17.
16. Jalasvuori, M., and Bamford, J.K. (2008) Structural co-evolution of viruses and cells in the primordial world. Orig Life Evol Biosph 38: 165-181.
17. Jansson, E., Backman, A., Hakkarainen, K., and Miettinen, A. (1982) Viruses of mycoplasmas and spiroplasmas. Med Biol 60: 125-131.
18. Khayat, R., Tang, L., Larson, E.T., Lawrence, C.M., Young, M., and Johnson, J.E. (2005) Structure of an archaeal virus capsid protein reveals a common ancestry to eukaryotic and bacterial viruses. Proc Natl Acad Sci USA 102: 18944-18949.
19. Kolling, G.L., and Matthews, K.R. (1999) Export of virulence genes and Shiga toxin by membrane vesicles of Escherichia coli O157:H7. Appl Environ Microbiol 65: 1843-1848.
20. Krupovic, M., and Bamford, D.H. (2008a) Virus evolution: how far does the double beta-barrel viral lineage extend? Nat Rev Microbiol 6: 941-948.
21. Krupovic, M., and Bamford, D.H. (2008b) Archaeal proviruses TKV4 and MVV extend the PRD1-adenovirus lineage to the phylum Euryarchaeota. Virology 375: 292-300.
22. Krupovic, M., and Bamford, D.H. (2010) Order to the viral universe. J Virol 84: 12476-12479.
23. Krupovic, M., Gribaldo, S., Bamford, D.H., and Forterre, P. (2010) The evolutionary history of archaeal MCM helicases: a case study of vertical evolution combined with hitchhiking of mobile genetic elements. Mol Biol Evol 27: 2716-2732.
24. Krupovic, M., Gonnet, M., Hania, W.B., Forterre, P., and Erauso, G. (2013) Insights into dynamics of mobile genetic elements in hyperthermophilic environments from five new Thermococcus plasmids. PLoS ONE 8: e49044.
25. Kulp, A., and Kuehn, M.J. (2010) Biological functions and biogenesis of secreted bacterial outer membrane vesicles. Annu Rev Microbiol 64: 163-184.
26. Lang, A.S., Zhaxybayeva, O., and Beatty, J.T. (2012) Gene transfer agents: phage-like elements of genetic exchange. Nat Rev Microbiol 10: 472-482.
27. Lepage, E., Marguet, E., Geslin, C., Matte-Tailliez, O., Zillig, W., Forterre, P., and Tailliez, P. (2004) Molecular diversity of new Thermococcales isolates from a single area of hydrothermal deep-sea vents as revealed by randomly amplified polymorphic DNA fingerprinting and 16S rRNA gene sequence analysis. Appl Environ Microbiol 70: 1277-1286.
28. Manning, A.J., and Kuehn, M.J. (2011) Contribution of bacterial outer membrane vesicles to innate bacterial defense. BMC Microbiol 11: 258.
29. Marti-Renom, M.A., Stuart, A.C., Fiser, A., Sanchez, R., Melo, F., and Sali, A. (2000) Comparative protein structure modeling of genes and genomes. Annu Rev Biophys Biomol Struct 29: 291-325.
30. Mashburn, L.M., and Whiteley, M. (2005) Membrane vesicles traffic signals and facilitate group activities in a prokaryote. Nature 437: 422-425.
31. Meckes, D.G., Jr, and Raab-Traub, N. (2011) Microvesicles and viral infection. J Virol 85: 12844-12854.
32. Pegtel, D.M., Cosmopoulos, K., Thorley-Lawson, D.A., van Eijndhoven, M.A., Hopmans, E.S., Lindenberg, J.L., etal. (2010) Functional delivery of viral miRNAs via exosomes. Proc Natl Acad Sci USA 107: 6328-6333.
33. Pietilä, M.K., Atanasova, N.S., Manole, V., Liljeroos, L., Butcher, S.J., Oksanen, H.M., and Bamford, D.H. (2012) Virion architecture unifies globally distributed pleolipoviruses infecting halophilic archaea. J Virol 86: 5067-5079.
34. Ramachandran, S., and Palanisamy, V. (2012) Horizontal transfer of RNAs: exosomes as mediators of intercellular communication. Wiley Interdiscip Rev RNA 3: 286-293.
35. Raoult, D., and Forterre, P. (2008) Redefining viruses: lessons from Mimivirus. Nat Rev Microbiol 6: 315-319.
36. Raposo, G., and Stoorvogel, W. (2013) Extracellular vesicles: exosomes, microvesicles, and friends. J Cell Biol 200: 373-383.
37. Santangelo, T.J., Cubonova, L., and Reeve, J.N. (2008) Shuttle vector expression in Thermococcus kodakaraensis: contributions of cis elements to protein synthesis in a hyperthermophilic archaeon. Appl Environ Microbiol 74: 3099-3104.
38. She, Q., Peng, X., Zillig, W., and Garrett, R.A. (2001) Gene capture in archaeal chromosomes. Nature 409: 478.
39. Soler, N., Justome, A., Quevillon-Cheruel, S., Lorieux, F., Le Cam, E., Marguet, E., and Forterre, P. (2007) The rolling-circle plasmid pTN1 from the hyperthermophilic archaeon Thermococcus nautilus. Mol Microbiol 66: 357-370.
40. Soler, N., Marguet, E., Verbavatz, J.M., and Forterre, P. (2008) Virus-like vesicles and extracellular DNA produced by hyperthermophilic archaea of the order Thermococcales. Res Microbiol 159: 390-399.
41. Soler, N., Gaudin, M., Marguet, E., and Forterre, P. (2011) Plasmids, viruses and virus-like membrane vesicles from Thermococcales. Biochem Soc Trans 39: 36-44.
42. Stingl, K., Schauer, K., Ecobichon, C., Labigne, A., Lenormand, P., Rousselle, J.C., etal. (2008) In vivo interactome of Helicobacter pylori urease revealed by tandem affinity purification. Mol Cell Proteomics 7: 2429-2441.
43. Strömsten, N.J., Bamford, D.H., and Bamford, J.K. (2005) In vitro DNA packaging of PRD1: a common mechanism for internal-membrane viruses. J Mol Biol 348: 617-629.
44. Tashiro, Y., Uchiyama, H., and Nomura, N. (2012) Multifunctional membrane vesicles in Pseudomonas aeruginosa. Environ Microbiol 14: 1349-1362.
45. Thomas, R., Grimsley, N., Escande, M.L., Subirana, L., Derelle, E., and Moreau, H. (2011) Acquisition and maintenance of resistance to viruses in eukaryotic phytoplankton populations. Environ Microbiol 13: 1412-1420.
46. Valadi, H., Ekstrom, K., Bossios, A., Sjostrand, M., Lee, J.J., and Lotvall, J.O. (2007) Exosome-mediated transfer of mRNAs and microRNAs is a novel mechanism of genetic exchange between cells. Nat Cell Biol 9: 654-659.
47. Velimirov, B., and Hagemann, S. (2011) Mobilizable bacterial DNA packaged into membrane vesicles induces serial transduction. Mob Genet Elements 1: 80-81.
48. Wiederstein, M., and Sippl, M.J. (2007) ProSA-web: interactive web service for the recognition of errors in three-dimensional structures of proteins. Nucleic Acids Res 35: W407-W410.
49. Yang, C., and Robbins, P.D. (2011) The roles of tumor-derived exosomes in cancer pathogenesis. Clin Dev Immunol 2011: 842849.
50. Yaron, S., Kolling, G.L., Simon, L., and Matthews, K.R. (2000) Vesicle-mediated transfer of virulence genes from Escherichia coli O157:H7 to other enteric bacteria. Appl Environ Microbiol 66: 4414-4420.