Methanogenesis affected by the co-occurrence of iron(III) oxides and humic substances

FEMS Microbiology Ecology

Volumn 88, Issue 1, 2014, Pages 107-120

  Zhou, Shungui ^a   Xu, Jielong ^a,b,c   Yang, Guiqin ^a   Zhuang, Li ^a  

^a GUANGDONG INSTITUTE OF ECO ENVIRONMENTAL AND SOIL SCIENCES   (China)

^b GUANGZHOU INSTITUTE OF GEOCHEMISTRY   (China)

^c UNIVERSITY OF CHINESE ACADEMY OF SCIENCES   (China)

Author keywords

Geobacter species; Humic substances, Iron(III) oxides; Methanogenesis; Syntrophy

Indexed keywords

ANOXIC CONDITIONS; BACTERIUM; BIOCHEMICAL COMPOSITION; CARBON CYCLE; CRYSTALLINITY; FERRIHYDRITE; HUMIC SUBSTANCE; IRON ORE; IRON OXIDE; METHANOGENESIS; PADDY FARMING; REDOX POTENTIAL; SOIL MICROORGANISM; WETLAND;

GEOBACTER; GEOBACTER SP.; METHANOSARCINA;

ANTHRAQUINONE 2,6 DISULFONATE; ANTHRAQUINONE DERIVATIVE; ANTHRAQUINONE-2,6-DISULFONATE; FERRIC HYDROXIDE; FERRIC ION; FERRIC OXIDE; MAGNETITE;

ARTICLE; CHEMISTRY; CHINA; GEOBACTER; GEOBACTER SPECIES; HUMIC SUBSTANCE; HUMIC SUBSTANCES, IRON(III) OXIDES; METABOLISM; METHANOGENESIS; METHANOSARCINA; MICROBIOLOGY; OXIDATION REDUCTION REACTION; RICE; SOIL; SYNTROPHY;

GEOBACTER SPECIES; HUMIC SUBSTANCES, IRON(III) OXIDES; METHANOGENESIS; SYNTROPHY;

ANTHRAQUINONES; CHINA; FERRIC COMPOUNDS; FERROSOFERRIC OXIDE; GEOBACTER; HUMIC SUBSTANCES; METHANOSARCINA; ORYZA SATIVA; OXIDATION-REDUCTION; SOIL; SOIL MICROBIOLOGY;

EID: 84898057048     PISSN: 01686496     EISSN: 15746941     Source Type: Journal    
DOI: 10.1111/1574-6941.12274     Document Type: Article

References (47)

1. Achtnich C, Bak F & Conrad R (1995) Competition for electron donors among nitrate reducers, ferric iron reducers, sulfate reducers, and methanogens in anoxic paddy soil. Biol Fertil Soils 19: 65-72.
2. Bosch J, Heister K, Hofmann T & Meckenstock RU (2010) Nanosized iron oxide colloids strongly enhance microbial iron reduction. Appl Environ Microbiol 76: 184-189.
3. Cervantes FJ, van der Velde S, Lettinga G & Field JA (2000) Competition between methanogenesis and quinone respiration for ecologically important substrates in anaerobic consortia. FEMS Microbiol Ecol 34: 161-171.
4. Chidthaisong A & Conrad R (2000) Turnover of glucose and acetate coupled to reduction of nitrate, ferric iron and sulfate and to methanogenesis in anoxic rice field soil. FEMS Microbiol Ecol 31: 73-86.
5. Coates JD, Ellis DJ, Blunt-Harris EL, Gaw CV, Roden EE & Lovley DR (1998) Recovery of humic-reducing bacteria from a diversity of environments. Appl Environ Microbiol 64: 1504-1509.
6. Cord-Ruwisch R, Lovley DR & Schink B (1998) Growth of Geobacter sulfurreducens with acetate in syntrophic cooperation with hydrogenoxidizing anaerobic partners. Appl Environ Microbiol 64: 2232-2236.
7. Dollhopf SL, Hashsham SA & Tiedje JM (2001) Interpreting 16S rDNA T-RFLP data: application of self-organizing maps and principal component analysis to describe community dynamics and convergence. Microb Ecol 42: 495-505.
8. Frenzel P, Bosse U & Janssen PH (1999) Rice roots and methanogenesis in a paddy soil: ferric iron as an alternative electron acceptor in the rooted soil. Soil Biol Biochem 31: 421-430.
9. Frey B, Niklaus PA, Kremer J, Luscher P & Zimmermann S (2011) Heavy-machinery traffic impacts methane emissions as well as methanogen abundance and community structure in oxic forest soils. Appl Environ Microbiol 77: 6060-6068.
10. 13C-acetate probing. ISME J 4: 267-278.
11. Jiang S, Park S, Yoon Y, Lee JH, Wu WM, Dan NP, Sadowsky MJ & Hur HG (2013) Methanogenesis facilitated by geobiochemical iron cycle in a novel syntrophic methanogenic microbial community. Environ Sci Technol 47: 10078-10084.
12. Kato S, Nakamura R, Kai F, Watanabe K & Hashimoto K (2010) Respiratory interactions of soil bacteria with (semi) conductive iron-oxide minerals. Environ Microbiol 12: 3114-3123.
13. Kato S, Hashimoto K & Watanabe K (2012) Methanogenesis facilitated by electric syntrophy via (semi) conductive iron-oxide minerals. Environ Microbiol 14: 1646-1654.
14. Kim SY, Lee SH, Freeman C, Fenner N & Kang H (2008) Comparative analysis of soil microbial communities and their responses to the short-term drought in bog, fen, and riparian wetlands. Soil Biol Biochem 40: 2874-2880.
15. Kostka JE & Nealson KH (1995) Dissolution and reduction of magnetite by bacteria. Environ Sci Technol 29: 2535-2540.
16. Liu F, Rotaru AE, Shrestha PM, Malvankar NS, Nevin KP & Lovley DR (2012) Promoting direct interspecies electron transfer with activated carbon. Energy Environ Sci 5: 8982-8989.
17. Lovley DR (1987) Organic matter mineralization with the reduction of ferric iron: a review. Geomicrobiol J 5: 375-399.
18. Lovley DR (1991) Dissimilatory Fe (III) and Mn (IV) reduction. Microbiol Rev 55: 259-287.
19. Lovley DR (2011a) Powering microbes with electricity: direct electron transfer from electrodes to microbes. Environ Microbiol Rep 3: 27-35.
20. Lovley DR (2011b) Live wires: direct extracellular electron exchange for bioenergy and the bioremediation of energy-related contamination. Energy Environ Sci 4: 4896-4906.
21. Lovley DR (2011c) Reach out and touch someone: potential impact of DIET (direct interspecies energy transfer) on anaerobic biogeochemistry, bioremediation, and bioenergy. Rev Environ Sci Biotechnol 10: 101-105.
22. Lovley DR & Phillips EJP (1986) Availability of ferric iron for microbial reduction in bottom sediments of the freshwater tidal Potomac River. Appl Environ Microbiol 52: 751-757.
23. Lovley DR & Phillips EJP (1988) Novel mode of microbial energy metabolism: organic carbon oxidation coupled to dissimilatory reduction of iron or manganese. Appl Environ Microbiol 54: 1472-1480.
24. Lovley DR, Coates JD, Blunt-Harris EL, Phillips EJP & Woodward JC (1996) Humic substances as electron acceptors for microbial respiration. Nature 382: 445-448.
25. Lovley D, Fraga JL, Blunt-Harris EL, Hayes L, Phillips E & Coates JD (1998) Humic substances as a mediator for microbially catalyzed metal reduction. Acta Hydrochim Hydrobiol 26: 152-157.
26. Lovley DR, Holmes DE & Nevin KP (2004) Dissimilatory Fe(III) and Mn(IV) reduction. Adv Microb Physiol 49: 219-286.
27. Malvankar NS & Lovley DR (2012) Microbial nanowires: a new paradigm for biological electron transfer and bioelectronics. ChemSusChem 5: 1039-1046.
28. Malvankar NS, Lau J, Nevin KP, Franks AE, Tuominen MT & Lovley DR (2012) Electrical conductivity in a mixed-species biofilm. Appl Environ Microbiol 78: 5967-5971.
29. McCormick ML & Adriaens P (2004) Carbon tetrachloride transformation on the surface of nanoscale biogenic magnetite particles. Environ Sci Technol 38: 1045-1053.
30. Morita M, Malvankar NS, Franks AE, Summers ZM, Giloteaux L, Rotaru AE, Rotaru C & Lovley DR (2011) Potential for direct interspecies electron transfer in methanogenic wastewater digester aggregates. MBio 2: e00159-11.
31. Ng WL, Schummer M, Cirisano FD, Baldwin RL, Karlan BY & Hood L (1996) High-throughput plasmid mini preparations facilitated by micro-mixing. Nucleic Acids Res 24: 5045-5047.
32. Pansu M & Gautheyrou J (2006) Handbook of Soil Analysis: Mineralogical, Organic and Inorganic Methods. Springer Verlag, Berlin Heidelberg.
33. Peretyazhko T & Sposito G (2005) Iron(III) reduction and phosphorous solubilization in humid tropical forest soils. Geochim Cosmochim Acta 69: 3643-3652.
34. Reiche M, Torburg G & Küsel K (2008) Competition of Fe(III) reduction and methanogenesis in an acidic fen. FEMS Microbiol Ecol 65: 88-101.
35. Rui J, Qiu Q & Lu Y (2011) Syntrophic acetate oxidation under thermophilic methanogenic condition in Chinese paddy field soil. FEMS Microbiol Ecol 77: 264-273.
36. Stams AJ, de Bok FA, Plugge CM, van Eekert MH, Dolfing J & Schraa G (2006) Exocellular electron transfer in anaerobic microbial communities. Environ Microbiol 8: 371-382.
37. Straub KL, Benz M & Schink B (2006) Iron metabolism in anoxic environments at near neutral pH. FEMS Microbiol Ecol 34: 181-186.
38. Summers ZM, Fogarty HE, Leang C, Franks AE, Malvankar NS & Lovley DR (2010) Direct exchange of electrons within aggregates of an evolved syntrophic coculture of anaerobic bacteria. Science 330: 1413-1415.
39. Teh YA, Dubinsky EA, Silver WL & Carlson CM (2008) Suppression of methanogenesis by dissimilatory Fe(III)-reducing bacteria in tropical rain forest soils: implications for ecosystem methane flux. Global Change Biol 14: 413-422.
40. Thamdrup B (2000) Bacterial manganese and iron reduction in aquatic sediments. Adv Microb Ecol 16: 41-84.
41. Tratnyek PG, Grundl TJ & Haderlein SB (2011) Aquatic Redox Chemistry. American Chemical Society, Washington, DC.
42. Tymensen LD, Beauchemin KA & McAllister TA (2012) Structures of free-living and protozoa-associated methanogen communities in the bovine rumen differ according to comparative analysis of 16S rRNA and mcrA genes. Microbiology 158: 1808-1817.
43. van Bodegom PM, Scholten JCM & Stams AJM (2004) Direct inhibition of methanogenesis by ferric iron. FEMS Microbiol Ecol 49: 261-268.
44. Wang Q, Garrity GM, Tiedje JM & Cole JR (2007) Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 73: 5261-5267.
45. Xie L, Shang C & Zhou Q (2008) Effect of Fe (III) on the bromate reduction by humic substances in aqueous solution. J Environ Sci 20: 257-261.
46. Xu J, Zhuang L, Yang G, Yuan Y & Zhou S (2013) Extracellular quinones affecting methane production and methanogenic community in paddy soil. Microb Ecol 66: 950-960.
47. 3 powders during γ-to α-phase transformation. Nano Lett 2: 245-252.