메뉴 건너뛰기




Volumn 40, Issue 11, 2008, Pages 2874-2880

Comparative analysis of soil microbial communities and their responses to the short-term drought in bog, fen, and riparian wetlands

Author keywords

Bog; Denitrifiers; Drought; Eubacterial community; Fen; Methanogens; Real time PCR; Riparian wetland; T RFLP

Indexed keywords

DENITRIFICATION; DROUGHT; FREQUENCY RESPONSE; GAS EMISSIONS; GLOBAL WARMING; GREENHOUSE GASES; LANDFORMS; LEAKAGE (FLUID); METHANOGENS; NITRIFICATION; RIVER POLLUTION;

EID: 53649084939     PISSN: 00380717     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.soilbio.2008.08.004     Document Type: Article
Times cited : (135)

References (56)
  • 1
    • 0032896989 scopus 로고    scopus 로고
    • Carbon balance of a boreal bog during a year with an exceptionally dry summer
    • Alm J., Schulman L., Walden J., Nykänen H., Martikainen P.J., and Silvola J. Carbon balance of a boreal bog during a year with an exceptionally dry summer. Ecology 80 (1999) 161-174
    • (1999) Ecology , vol.80 , pp. 161-174
    • Alm, J.1    Schulman, L.2    Walden, J.3    Nykänen, H.4    Martikainen, P.J.5    Silvola, J.6
  • 2
    • 34548235824 scopus 로고    scopus 로고
    • Interpreting ecological diversity indices applied to terminal restriction fragment length polymorphism data: insights from simulated microbial communities
    • Blackwood C.B., Hudleston D., Zak D.R., and Buyer J.S. Interpreting ecological diversity indices applied to terminal restriction fragment length polymorphism data: insights from simulated microbial communities. Applied and Environmental Microbiology 73 (2007) 5276-5283
    • (2007) Applied and Environmental Microbiology , vol.73 , pp. 5276-5283
    • Blackwood, C.B.1    Hudleston, D.2    Zak, D.R.3    Buyer, J.S.4
  • 3
    • 33749431394 scopus 로고    scopus 로고
    • Seasonal variations in decomposition processes in a valley-bottom riparian peatland
    • Bonnett S.A., Ostle N., and Freeman C. Seasonal variations in decomposition processes in a valley-bottom riparian peatland. Science of the Total Environment 370 (2006) 561-573
    • (2006) Science of the Total Environment , vol.370 , pp. 561-573
    • Bonnett, S.A.1    Ostle, N.2    Freeman, C.3
  • 4
    • 0031578657 scopus 로고    scopus 로고
    • Effects of wetting and drying on methane emissions from ephemeral floodplain wetlands in south-eastern Australia
    • Boon P.I., Mitchell A., and Lee K. Effects of wetting and drying on methane emissions from ephemeral floodplain wetlands in south-eastern Australia. Hydrobiologia 357 (1997) 73-87
    • (1997) Hydrobiologia , vol.357 , pp. 73-87
    • Boon, P.I.1    Mitchell, A.2    Lee, K.3
  • 5
    • 0031687820 scopus 로고    scopus 로고
    • Development of PCR primer systems for amplification of nitrite reductase genes (nirK and nirS) to detect denitrifying bacteria in environmental samples
    • Braker G., Fesefeldt A., and Witzel K.P. Development of PCR primer systems for amplification of nitrite reductase genes (nirK and nirS) to detect denitrifying bacteria in environmental samples. Applied and Environmental Microbiology 64 (1998) 3769-3775
    • (1998) Applied and Environmental Microbiology , vol.64 , pp. 3769-3775
    • Braker, G.1    Fesefeldt, A.2    Witzel, K.P.3
  • 6
    • 33749998098 scopus 로고    scopus 로고
    • Microbial community response to soil solarization in Nepal's rice-wheat cropping system
    • Culman S.W., Duxburya J.M., Laurena J.G., and Thies J.E. Microbial community response to soil solarization in Nepal's rice-wheat cropping system. Soil Biology & Biochemistry 38 (2006) 3359-3371
    • (2006) Soil Biology & Biochemistry , vol.38 , pp. 3359-3371
    • Culman, S.W.1    Duxburya, J.M.2    Laurena, J.G.3    Thies, J.E.4
  • 7
    • 2942566096 scopus 로고    scopus 로고
    • Prokaryotic diversity and its limits: microbial community structure in nature and implications for microbial ecology
    • Curtis T.P., and Sloan W.T. Prokaryotic diversity and its limits: microbial community structure in nature and implications for microbial ecology. Current Opinion in Microbiology 7 (2004) 221-226
    • (2004) Current Opinion in Microbiology , vol.7 , pp. 221-226
    • Curtis, T.P.1    Sloan, W.T.2
  • 8
    • 33646252250 scopus 로고    scopus 로고
    • Sulphate reduction and the suppression of peatland methane emissions following summer drought
    • Dowrick D.J., Freeman C., Lock M.A., and Reynolds B. Sulphate reduction and the suppression of peatland methane emissions following summer drought. Geoderma 132 (2006) 384-390
    • (2006) Geoderma , vol.132 , pp. 384-390
    • Dowrick, D.J.1    Freeman, C.2    Lock, M.A.3    Reynolds, B.4
  • 9
    • 0000760585 scopus 로고    scopus 로고
    • Soil biodiversity and its implications for ecosystem functioning in a heterogeneous and variable environment
    • Ekschmitt K., and Griffiths B.S. Soil biodiversity and its implications for ecosystem functioning in a heterogeneous and variable environment. Applied Soil Ecology 10 (1998) 201-215
    • (1998) Applied Soil Ecology , vol.10 , pp. 201-215
    • Ekschmitt, K.1    Griffiths, B.S.2
  • 10
    • 16344385835 scopus 로고    scopus 로고
    • Hydrological effects on the diversity of phenolic degrading bacteria in a peatland: implications for carbon cycling
    • Fenner N., Freeman C., and Reynolds B. Hydrological effects on the diversity of phenolic degrading bacteria in a peatland: implications for carbon cycling. Soil Biology & Biochemistry 37 (2005) 1277-1287
    • (2005) Soil Biology & Biochemistry , vol.37 , pp. 1277-1287
    • Fenner, N.1    Freeman, C.2    Reynolds, B.3
  • 12
    • 0032876852 scopus 로고    scopus 로고
    • Prokaryotic genome size and SSU rDNA copy number: estimation of microbial relative abundance from a mixed population
    • Fogel G.B., Collins C.R., Li J., and Brunk C.F. Prokaryotic genome size and SSU rDNA copy number: estimation of microbial relative abundance from a mixed population. Microbial Ecology 38 (1999) 93-113
    • (1999) Microbial Ecology , vol.38 , pp. 93-113
    • Fogel, G.B.1    Collins, C.R.2    Li, J.3    Brunk, C.F.4
  • 13
    • 0027388108 scopus 로고
    • 2O from a Welsh peatland following simulation of water table draw-down: potential feedback to climatic change
    • 2O from a Welsh peatland following simulation of water table draw-down: potential feedback to climatic change. Biogeochemistry 19 (1992) 51-60
    • (1992) Biogeochemistry , vol.19 , pp. 51-60
    • Freeman, C.1    Lock, M.A.2    Reynolds, B.3
  • 14
    • 0242676203 scopus 로고    scopus 로고
    • Microsite-dependent changes in methanogenic populations in a boreal oligotrophic fen
    • Galand P., Fritze H., and Yrjälä K. Microsite-dependent changes in methanogenic populations in a boreal oligotrophic fen. Environmental Microbiology 5 (2003) 1133-1143
    • (2003) Environmental Microbiology , vol.5 , pp. 1133-1143
    • Galand, P.1    Fritze, H.2    Yrjälä, K.3
  • 15
    • 17444386010 scopus 로고    scopus 로고
    • Pathways for methanogenesis and diversity of methanogenic Archaea in three boreal peatland ecosystems
    • Galand P.E., Fritze H., Conrad R., and Yrjälä K. Pathways for methanogenesis and diversity of methanogenic Archaea in three boreal peatland ecosystems. Applied and Environmental Microbiology 71 (2005) 2195-2198
    • (2005) Applied and Environmental Microbiology , vol.71 , pp. 2195-2198
    • Galand, P.E.1    Fritze, H.2    Conrad, R.3    Yrjälä, K.4
  • 16
    • 24344446508 scopus 로고    scopus 로고
    • Methanogen communities in a drained bog: effect of ash fertilization
    • Galand P.E., Juottonen H., Fritze H., and Yrjälä K. Methanogen communities in a drained bog: effect of ash fertilization. Microbial Ecology 49 (2005) 209-217
    • (2005) Microbial Ecology , vol.49 , pp. 209-217
    • Galand, P.E.1    Juottonen, H.2    Fritze, H.3    Yrjälä, K.4
  • 20
    • 0034253204 scopus 로고    scopus 로고
    • Terminal restriction pattern analysis of 16S rRNA genes for the characterization of bacterial communities of activated sludge
    • Hiraishi A., Iwasaki M., and Shinjo H. Terminal restriction pattern analysis of 16S rRNA genes for the characterization of bacterial communities of activated sludge. Journal of Bioscience and Bioengineering 90 (2000) 148-156
    • (2000) Journal of Bioscience and Bioengineering , vol.90 , pp. 148-156
    • Hiraishi, A.1    Iwasaki, M.2    Shinjo, H.3
  • 21
    • 0021347374 scopus 로고
    • The effect of oxygen on denitrification during steady-state growth of Paracoccus halodenitrificans
    • Hochstein L.I., Betlach M., and Kritikos G. The effect of oxygen on denitrification during steady-state growth of Paracoccus halodenitrificans. Archives of Microbiology 137 (1984) 74-78
    • (1984) Archives of Microbiology , vol.137 , pp. 74-78
    • Hochstein, L.I.1    Betlach, M.2    Kritikos, G.3
  • 24
    • 33846895703 scopus 로고    scopus 로고
    • Effects of short- and long-term water-level drawdown on the populations and activity of aerobic decomposers in a boreal peatland
    • Jaatinen K., Fritze H., Laine J., and Laiho R. Effects of short- and long-term water-level drawdown on the populations and activity of aerobic decomposers in a boreal peatland. Global Change Biology 13 (2007) 491-510
    • (2007) Global Change Biology , vol.13 , pp. 491-510
    • Jaatinen, K.1    Fritze, H.2    Laine, J.3    Laiho, R.4
  • 26
    • 25144493755 scopus 로고    scopus 로고
    • Methanogen communities and Bacteria along an ecohydrological gradient in a northern raised bog complex
    • Juottonen H., Galand P.E., Fritze H., and Yrjälä K. Methanogen communities and Bacteria along an ecohydrological gradient in a northern raised bog complex. Environmental Microbiology 7 (2005) 1547-1557
    • (2005) Environmental Microbiology , vol.7 , pp. 1547-1557
    • Juottonen, H.1    Galand, P.E.2    Fritze, H.3    Yrjälä, K.4
  • 27
    • 33748792525 scopus 로고    scopus 로고
    • Abundance of narG, nirS, nirK, and nosZ genes of denitrifying bacteria during primary successions of a glacier foreland
    • Kandeler E., Deiglmayr K., Tscherko D., Bru D., and Philippot L. Abundance of narG, nirS, nirK, and nosZ genes of denitrifying bacteria during primary successions of a glacier foreland. Applied and Environmental Microbiology 72 (2006) 5957-5962
    • (2006) Applied and Environmental Microbiology , vol.72 , pp. 5957-5962
    • Kandeler, E.1    Deiglmayr, K.2    Tscherko, D.3    Bru, D.4    Philippot, L.5
  • 28
    • 0033052589 scopus 로고    scopus 로고
    • Phosphatase and arylsulphatase activities in wetland soils - annual variation and controlling factors
    • Kang H., and Freeman C. Phosphatase and arylsulphatase activities in wetland soils - annual variation and controlling factors. Soil Biology & Biochemistry 31 (1999) 449-454
    • (1999) Soil Biology & Biochemistry , vol.31 , pp. 449-454
    • Kang, H.1    Freeman, C.2
  • 29
    • 84862946098 scopus 로고
    • Temporal variations in the stable carbon isotopic composition of methane emitted from Minnesota peatlands
    • Kelley C.A., Dise N.B., and Martens C.S. Temporal variations in the stable carbon isotopic composition of methane emitted from Minnesota peatlands. Global Biogeochemical Cycles 6 (1992) 263-269
    • (1992) Global Biogeochemical Cycles , vol.6 , pp. 263-269
    • Kelley, C.A.1    Dise, N.B.2    Martens, C.S.3
  • 30
    • 0028995526 scopus 로고
    • Long-term effects of water level drawdown on the vegetation of drained pine mires in southern Finland
    • Laine J., Vasander H., and Laiho R. Long-term effects of water level drawdown on the vegetation of drained pine mires in southern Finland. Journal of Applied Ecology 32 (1995) 785-802
    • (1995) Journal of Applied Ecology , vol.32 , pp. 785-802
    • Laine, J.1    Vasander, H.2    Laiho, R.3
  • 31
    • 33746653640 scopus 로고    scopus 로고
    • Decomposition in peatlands: reconciling seemingly contrasting results on the impacts of lowered water levels
    • Laiho R. Decomposition in peatlands: reconciling seemingly contrasting results on the impacts of lowered water levels. Soil Biology & Biochemistry 38 (2006) 2011-2024
    • (2006) Soil Biology & Biochemistry , vol.38 , pp. 2011-2024
    • Laiho, R.1
  • 32
    • 0001857117 scopus 로고
    • 16S/23S rRNA sequencing
    • Stackebrant E., and Goodfellow M. (Eds), Wiley, NY
    • Lane D.J. 16S/23S rRNA sequencing. In: Stackebrant E., and Goodfellow M. (Eds). Nucleic Acid Techniques in Bacterial Systematics (1991), Wiley, NY 115-175
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 115-175
    • Lane, D.J.1
  • 33
    • 0030661563 scopus 로고    scopus 로고
    • Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA
    • Liu W., Marsh T., Cheng H., and Forney L. Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA. Applied and Environmental Microbiology 63 (1997) 4516-4522
    • (1997) Applied and Environmental Microbiology , vol.63 , pp. 4516-4522
    • Liu, W.1    Marsh, T.2    Cheng, H.3    Forney, L.4
  • 35
    • 0022823694 scopus 로고
    • Reduction in summer soil wetness induced by an increase in atmospheric carbon dioxide
    • Manabe S., and Wetherald R.T. Reduction in summer soil wetness induced by an increase in atmospheric carbon dioxide. Science 232 (1986) 626-628
    • (1986) Science , vol.232 , pp. 626-628
    • Manabe, S.1    Wetherald, R.T.2
  • 41
    • 0037184270 scopus 로고    scopus 로고
    • Denitrifying genes in bacterial and Archaeal genomes
    • Philippot L. Denitrifying genes in bacterial and Archaeal genomes. Biochimica et Biophysica Acta 1577 (2002) 355-376
    • (2002) Biochimica et Biophysica Acta , vol.1577 , pp. 355-376
    • Philippot, L.1
  • 42
    • 35348933745 scopus 로고    scopus 로고
    • Multivariate analyses in microbial ecology
    • Ramette A. Multivariate analyses in microbial ecology. FEMS Microbiology Ecology 62 (2007) 142-160
    • (2007) FEMS Microbiology Ecology , vol.62 , pp. 142-160
    • Ramette, A.1
  • 43
    • 0031852982 scopus 로고    scopus 로고
    • Effects of short-term drainage and aeration on the production of methane in submerged rice soil
    • Ratering S., and Conrad R. Effects of short-term drainage and aeration on the production of methane in submerged rice soil. Global Change Biology 4 (1998) 397-407
    • (1998) Global Change Biology , vol.4 , pp. 397-407
    • Ratering, S.1    Conrad, R.2
  • 44
    • 0030301264 scopus 로고    scopus 로고
    • Fluxes of nitrous oxide from boreal peatlands as affected by peatland type, water table level and nitrification capacity
    • Regina K., Nykänen H., Silvola J., and Martikainen P.J. Fluxes of nitrous oxide from boreal peatlands as affected by peatland type, water table level and nitrification capacity. Biogeochemistry 35 (1996) 401-418
    • (1996) Biogeochemistry , vol.35 , pp. 401-418
    • Regina, K.1    Nykänen, H.2    Silvola, J.3    Martikainen, P.J.4
  • 45
    • 3242813944 scopus 로고    scopus 로고
    • Community composition and activities of denitrifying bacteria from adjacent agricultural soil, riparian soil, and creek sediment in Oregon, USA
    • Rich J.J., and Myrold D.D. Community composition and activities of denitrifying bacteria from adjacent agricultural soil, riparian soil, and creek sediment in Oregon, USA. Soil Biology & Biochemistry 36 (2004) 1431-1441
    • (2004) Soil Biology & Biochemistry , vol.36 , pp. 1431-1441
    • Rich, J.J.1    Myrold, D.D.2
  • 46
    • 8944255856 scopus 로고
    • Aerobic denitrification: a controversy revived
    • Robertson L.A., and Kuenen J.G. Aerobic denitrification: a controversy revived. Archives of Microbiology 154 (1984) 187-191
    • (1984) Archives of Microbiology , vol.154 , pp. 187-191
    • Robertson, L.A.1    Kuenen, J.G.2
  • 48
    • 84856043672 scopus 로고
    • A mathematical theory of communication
    • Shannon C.E. A mathematical theory of communication. Bell System Technical Journal 27 (1948) 623-656
    • (1948) Bell System Technical Journal , vol.27 , pp. 623-656
    • Shannon, C.E.1
  • 49
    • 0029068827 scopus 로고
    • Partial gene-sequences for the α-subunit of methyl-coenzyme M reductase (mcrI) as a phylogenetic tool for the family Methanosarcinaceae
    • Springer E., Sachs M.S., Woese C.R., and Boone D.R. Partial gene-sequences for the α-subunit of methyl-coenzyme M reductase (mcrI) as a phylogenetic tool for the family Methanosarcinaceae. International Journal of Systematic Bacteriology 45 (1995) 554-559
    • (1995) International Journal of Systematic Bacteriology , vol.45 , pp. 554-559
    • Springer, E.1    Sachs, M.S.2    Woese, C.R.3    Boone, D.R.4
  • 50
    • 0031685510 scopus 로고    scopus 로고
    • Biochemistry of methanogenesis: a tribute to Marjory Stephenson
    • Thauer R.K. Biochemistry of methanogenesis: a tribute to Marjory Stephenson. Microbiology 144 (1998) 2377-2406
    • (1998) Microbiology , vol.144 , pp. 2377-2406
    • Thauer, R.K.1
  • 52
    • 0028181948 scopus 로고
    • Biodiversity and stability in grasslands
    • Tilman D., and Downing J.A. Biodiversity and stability in grasslands. Nature 367 (1994) 363-365
    • (1994) Nature , vol.367 , pp. 363-365
    • Tilman, D.1    Downing, J.A.2
  • 53
  • 54
    • 0034496298 scopus 로고    scopus 로고
    • Response of bog and fen plant communities to warming and water-table manipulations
    • Weltzin J.F., Pastor J., Harth C., Bridgham S.D., Updegraff K., and Chapin C.T. Response of bog and fen plant communities to warming and water-table manipulations. Ecology 81 (2000) 3464-3478
    • (2000) Ecology , vol.81 , pp. 3464-3478
    • Weltzin, J.F.1    Pastor, J.2    Harth, C.3    Bridgham, S.D.4    Updegraff, K.5    Chapin, C.T.6
  • 55
    • 0001531894 scopus 로고
    • Nitrogen mineralization and water-table height in Oligotrophic deep peat
    • Williams B.L., and Wheatley R.E. Nitrogen mineralization and water-table height in Oligotrophic deep peat. Biology and Fertility of Soils 6 (1988) 141-147
    • (1988) Biology and Fertility of Soils , vol.6 , pp. 141-147
    • Williams, B.L.1    Wheatley, R.E.2
  • 56
    • 16344363305 scopus 로고    scopus 로고
    • Group-specific primer and probe sets to detect methanogenic communities using quantitative real-time polymerase chain reaction
    • Yu Y., Lee C., Kim J., and Hwang S. Group-specific primer and probe sets to detect methanogenic communities using quantitative real-time polymerase chain reaction. Biotechnology and Bioengineering 89 (2005) 670-679
    • (2005) Biotechnology and Bioengineering , vol.89 , pp. 670-679
    • Yu, Y.1    Lee, C.2    Kim, J.3    Hwang, S.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.