메뉴 건너뛰기




Volumn 9, Issue 3, 2014, Pages

Structure-function relationship of a plant NCS1 member - Homology modeling and mutagenesis identified residues critical for substrate specificity of PLUTO, a nucleobase transporter from arabidopsis

Author keywords

[No Author keywords available]

Indexed keywords

ADENINE; CARRIER PROTEIN; GUANINE; NUCLEOBASE TRANSPORTER; NUCLEOBASE TRANSPORTER PLUTO; PROTEIN MHP 1; UNCLASSIFIED DRUG; URACIL; ARABIDOPSIS PROTEIN; NCS1 PROTEIN, ARABIDOPSIS;

EID: 84898009362     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0091343     Document Type: Article
Times cited : (25)

References (37)
  • 1
  • 2
    • 80053218151 scopus 로고    scopus 로고
    • Plastid uridine salvage activity is required for photoassimilate allocation and partitioning in Arabidopsis
    • Chen M, Thelen JJ (2011) Plastid uridine salvage activity is required for photoassimilate allocation and partitioning in Arabidopsis. Plant Cell 23: 2991-3006.
    • (2011) Plant Cell , vol.23 , pp. 2991-3006
    • Chen, M.1    Thelen, J.J.2
  • 3
    • 28844501584 scopus 로고    scopus 로고
    • Inhibition of de novo pyrimidine synthesis in growing potato tubers leads to a compensatory stimulation of the pyrimidine salvage pathway and a subsequent increase in biosynthetic performance
    • Geigenberger P, Regierer B, Nunes-Nesi A, Leisse A, Urbanczyk-Wochniak E, et al. (2005) Inhibition of de novo pyrimidine synthesis in growing potato tubers leads to a compensatory stimulation of the pyrimidine salvage pathway and a subsequent increase in biosynthetic performance. Plant Cell 17: 2077-2088.
    • (2005) Plant Cell , vol.17 , pp. 2077-2088
    • Geigenberger, P.1    Regierer, B.2    Nunes-Nesi, A.3    Leisse, A.4    Urbanczyk-Wochniak, E.5
  • 4
    • 84861705833 scopus 로고    scopus 로고
    • De novo pyrimidine nucleotide synthesis mainly occurs outside of plastids, but a previously undiscovered nucleobase importer provides substrates for the essential salvage pathway in Arabidopsis
    • Witz S, Jung B, Fürst S, Möhlmann T (2012) De novo pyrimidine nucleotide synthesis mainly occurs outside of plastids, but a previously undiscovered nucleobase importer provides substrates for the essential salvage pathway in Arabidopsis. Plant Cell 24: 1549-1559.
    • (2012) Plant Cell , vol.24 , pp. 1549-1559
    • Witz, S.1    Jung, B.2    Fürst, S.3    Möhlmann, T.4
  • 5
    • 84860331358 scopus 로고    scopus 로고
    • Genetic and molecular characterization reveals a unique nucleobase cation symporter 1 in Arabidopsis
    • Mourad GS, Tippmann-Crosby J, Hunt KA, Gicheru Y, Bade K, et al. (2012) Genetic and molecular characterization reveals a unique nucleobase cation symporter 1 in Arabidopsis. FEBS Lett 586: 1370-1378.
    • (2012) FEBS Lett , vol.586 , pp. 1370-1378
    • Mourad, G.S.1    Tippmann-Crosby, J.2    Hunt, K.A.3    Gicheru, Y.4    Bade, K.5
  • 7
    • 84879434920 scopus 로고    scopus 로고
    • The nucleobase cation symporter 1 of Chlamydomonas reinhardtii and that of the evolutionarily distant Arabidopsis thaliana display parallel function and establish a plant-specific solute transport profile
    • Schein JR, Hunt KA, Minton JA, Schultes NP, Mourad GS (2013) The nucleobase cation symporter 1 of Chlamydomonas reinhardtii and that of the evolutionarily distant Arabidopsis thaliana display parallel function and establish a plant-specific solute transport profile. Plant Physiol Biochem 70: 52-60.
    • (2013) Plant Physiol Biochem , vol.70 , pp. 52-60
    • Schein, J.R.1    Hunt, K.A.2    Minton, J.A.3    Schultes, N.P.4    Mourad, G.S.5
  • 8
    • 84868254900 scopus 로고    scopus 로고
    • Modeling, substrate docking, and mutational analysis identify residues essential for the function and specificity of a eukaryotic purine-cytosine NCS1 transporter
    • Krypotou E, Kosti V, Amillis S, Myrianthopoulos V, Mikros E, et al. (2012) Modeling, substrate docking, and mutational analysis identify residues essential for the function and specificity of a eukaryotic purine-cytosine NCS1 transporter. J Biol Chem 287: 36792-36803.
    • (2012) J Biol Chem , vol.287 , pp. 36792-36803
    • Krypotou, E.1    Kosti, V.2    Amillis, S.3    Myrianthopoulos, V.4    Mikros, E.5
  • 9
    • 76549087773 scopus 로고    scopus 로고
    • Intracellular metabolite transporters in plants
    • Linka N, Weber AP (2010) Intracellular metabolite transporters in plants. Mol Plant 3: 21-53.
    • (2010) Mol Plant , vol.3 , pp. 21-53
    • Linka, N.1    Weber, A.P.2
  • 10
    • 0028822675 scopus 로고
    • Molecular characterization of an Arabidopsis thaliana cDNA encoding a novel putative adenylate translocator of higher plants
    • Kampfenkel K, Möhlmann T, Batz O, van Montagu M, Inzé D, et al. (1995) Molecular characterization of an Arabidopsis thaliana cDNA encoding a novel putative adenylate translocator of higher plants. FEBS Lett 374: 351-355.
    • (1995) FEBS Lett , vol.374 , pp. 351-355
    • Kampfenkel, K.1    Möhlmann, T.2    Batz, O.3    Van Montagu, M.4    Inzé, D.5
  • 11
    • 0031036197 scopus 로고    scopus 로고
    • Characterization of a novel ATP/ADP transporter from Arabidopsis thaliana L
    • Neuhaus HE, Thom E, Möhlmann T, Steup M, Kampfenkel K (1997) Characterization of a novel ATP/ADP transporter from Arabidopsis thaliana L. Plant J 11: 73-82.
    • (1997) Plant J , vol.11 , pp. 73-82
    • Neuhaus, H.E.1    Thom, E.2    Möhlmann, T.3    Steup, M.4    Kampfenkel, K.5
  • 12
    • 52649148626 scopus 로고    scopus 로고
    • Characterization of the Arabidopsis Brittle1 transport protein and impact of reduced activity on plant metabolism
    • Kirchberger S, Tjaden J, Ekkehard NH (2008) Characterization of the Arabidopsis Brittle1 transport protein and impact of reduced activity on plant metabolism. Plant J 56: 51-63.
    • (2008) Plant J , vol.56 , pp. 51-63
    • Kirchberger, S.1    Tjaden, J.2    Ekkehard, N.H.3
  • 14
    • 0020338560 scopus 로고
    • Expression of the cloned uracil permease gene of Saccharomyces cerevisiae in a heterologous membrane
    • Chevallier MR, Lacroute F (1982) Expression of the cloned uracil permease gene of Saccharomyces cerevisiae in a heterologous membrane. EMBO J 1: 375-377.
    • (1982) EMBO J , vol.1 , pp. 375-377
    • Chevallier, M.R.1    Lacroute, F.2
  • 16
    • 0023430553 scopus 로고
    • Allantoin transport in Saccharomyces cerevisiae is regulated by two induction systems
    • Cooper TG, Chisholm VT, Cho HJ, Yoo HS (1987) Allantoin transport in Saccharomyces cerevisiae is regulated by two induction systems. J Bacteriol 169: 4660-4667.
    • (1987) J Bacteriol , vol.169 , pp. 4660-4667
    • Cooper, T.G.1    Chisholm, V.T.2    Cho, H.J.3    Yoo, H.S.4
  • 17
    • 0017657484 scopus 로고
    • Allantoin transport in Saccharomyces cerevisiae
    • Sumrada R, Cooper TG (1977) Allantoin transport in Saccharomyces cerevisiae. J Bacteriol 131: 839-847. (Pubitemid 8178090)
    • (1977) Journal of Bacteriology , vol.131 , Issue.3 , pp. 839-847
    • Sumrada, R.1    Cooper, T.G.2
  • 18
    • 77951585158 scopus 로고    scopus 로고
    • Molecular basis of alternating access membrane transport by the sodiumhydantoin transporter Mhp1
    • Shimamura T, Weyand S, Beckstein O, Rutherford NG, Hadden JM, et al. (2010) Molecular basis of alternating access membrane transport by the sodiumhydantoin transporter Mhp1. Science 328: 470-473.
    • (2010) Science , vol.328 , pp. 470-473
    • Shimamura, T.1    Weyand, S.2    Beckstein, O.3    Rutherford, N.G.4    Hadden, J.M.5
  • 19
    • 81255164752 scopus 로고    scopus 로고
    • Simulations of the alternating access mechanism of the sodium symporter Mhp1
    • Adelman JL, Dale AL, Zwier MC, Bhatt D, Chong LT, et al. (2011) Simulations of the alternating access mechanism of the sodium symporter Mhp1. Biophys J 101: 2399-2407.
    • (2011) Biophys J , vol.101 , pp. 2399-2407
    • Adelman, J.L.1    Dale, A.L.2    Zwier, M.C.3    Bhatt, D.4    Chong, L.T.5
  • 20
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson DJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucl Acids Res 22: 4673-4680. (Pubitemid 24354800)
    • (1994) Nucleic Acids Research , vol.22 , Issue.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 21
    • 39449115394 scopus 로고    scopus 로고
    • I-TASSER server for protein 3D structure prediction
    • Zhang Y (2008) I-TASSER server for protein 3D structure prediction. BMC Bioinformatics 9: 40.
    • (2008) BMC Bioinformatics , vol.9 , pp. 40
    • Zhang, Y.1
  • 23
    • 77954257799 scopus 로고    scopus 로고
    • ConSurf 2010: Calculating evolutionary conservation in sequence and structure of proteins and nucleic acids
    • Ashkenazy H, Erez E, Martz E, Pupko T, Ben-Tal N (2010) ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids. Nucl, Acids. Res. 38, W529-W533.
    • (2010) Nucl, Acids. Res. , vol.38
    • Ashkenazy, H.1    Erez, E.2    Martz, E.3    Pupko, T.4    Ben-Tal, N.5
  • 24
    • 33644861214 scopus 로고    scopus 로고
    • OPM: Orientations of proteins in membranes database
    • DOI 10.1093/bioinformatics/btk023
    • Lomize MA, Lomize AL, Pogozheva ID, Mosberg HI (2006) OPM: orientations of proteins in membranes database. Bioinformatics 22: 623-625. (Pubitemid 43372827)
    • (2006) Bioinformatics , vol.22 , Issue.5 , pp. 623-625
    • Lomize, M.A.1    Lomize, A.L.2    Pogozheva, I.D.3    Mosberg, H.I.4
  • 25
    • 33645941402 scopus 로고
    • The OPLS [optimized potentials for liquid simulations] potential functions for proteins, energy minimizations for crystals of cyclic peptides and crambin
    • Jorgensen WL, Tirado-Rives J (1988) The OPLS [optimized potentials for liquid simulations] potential functions for proteins, energy minimizations for crystals of cyclic peptides and crambin. J Am Chem Soc 110: 1657-1666.
    • (1988) J Am Chem Soc , vol.110 , pp. 1657-1666
    • Jorgensen, W.L.1    Tirado-Rives, J.2
  • 26
    • 55349092991 scopus 로고    scopus 로고
    • Structure and molecular mechanism of a nucleobase-cation-symport-1 family transporter
    • Weyand S, Shimamura T, Yajima S, Suzuki S, Mirza O, et al. (2008) Structure and molecular mechanism of a nucleobase-cation-symport-1 family transporter. Science 322: 709-713.
    • (2008) Science , vol.322 , pp. 709-713
    • Weyand, S.1    Shimamura, T.2    Yajima, S.3    Suzuki, S.4    Mirza, O.5
  • 27
    • 51349162011 scopus 로고    scopus 로고
    • Specific interdomain synergy in the UapA transporter determines its unique specificity for uric acid among NAT carriers
    • Papageorgiou I, Gournas C, Vlanti A, Amillis S, Pantazopoulou A, et al. (2008) Specific interdomain synergy in the UapA transporter determines its unique specificity for uric acid among NAT carriers. J Mol Biol 382: 1121-1135.
    • (2008) J Mol Biol , vol.382 , pp. 1121-1135
    • Papageorgiou, I.1    Gournas, C.2    Vlanti, A.3    Amillis, S.4    Pantazopoulou, A.5
  • 28
    • 33646271643 scopus 로고    scopus 로고
    • The hydantoin transport protein from Microbacterium liquefaciens
    • Suzuki S, Henderson PJ (2006) The hydantoin transport protein from Microbacterium liquefaciens. J Bacteriol 188: 3329-3336.
    • (2006) J Bacteriol , vol.188 , pp. 3329-3336
    • Suzuki, S.1    Henderson, P.J.2
  • 29
    • 77950519435 scopus 로고    scopus 로고
    • Dynamic elements at both cytoplasmically and extracellularly facing sides of the UapA transporter selectively control the accessibility of substrates to their translocation pathway
    • Kosti V, Papageorgiou I, Diallinas G (2010) Dynamic elements at both cytoplasmically and extracellularly facing sides of the UapA transporter selectively control the accessibility of substrates to their translocation pathway. J Mol Biol 397: 1132-1143.
    • (2010) J Mol Biol , vol.397 , pp. 1132-1143
    • Kosti, V.1    Papageorgiou, I.2    Diallinas, G.3
  • 31
    • 20444419395 scopus 로고    scopus 로고
    • Structure and mechanism of the lactose permease
    • Kaback HR (2005) Structure and mechanism of the lactose permease. C R Biol 328: 557-567.
    • (2005) C R Biol , vol.328 , pp. 557-567
    • Kaback, H.R.1
  • 32
    • 84887345210 scopus 로고    scopus 로고
    • Use of molecular modelling to probe the mechanism of the nucleoside transporter NupG
    • Vaziri H, Baldwin SA, Baldwin JM, Adams DG, Young JD, et al. (2013) Use of molecular modelling to probe the mechanism of the nucleoside transporter NupG. Mol Membr Biol 30: 114-128.
    • (2013) Mol Membr Biol , vol.30 , pp. 114-128
    • Vaziri, H.1    Baldwin, S.A.2    Baldwin, J.M.3    Adams, D.G.4    Young, J.D.5
  • 33
    • 42549104322 scopus 로고    scopus 로고
    • The Aspergillus nidulans FcyB cytosine-purine scavenger is highly expressed during germination and in reproductive compartments and is downregulated by endocytosis
    • DOI 10.1111/j.1365-2958.2008.06198.x
    • Vlanti A, Diallinas G (2008) The Aspergillus nidulans FcyB cytosine-purine scavenger is highly expressed during germination and in reproductive compartments and is downregulated by endocytosis. Mol Microbiol 68: 959-977. (Pubitemid 351581059)
    • (2008) Molecular Microbiology , vol.68 , Issue.4 , pp. 959-977
    • Vlanti, A.1    Diallinas, G.2
  • 34
    • 84870536445 scopus 로고    scopus 로고
    • Improved growth and stress tolerance in the Arabidopsis oxt1 mutant triggered by altered adenine metabolism
    • Sukrong S, Yun KY, Stadler P, Kumar C, Facciuolo T, et al. (2012) Improved growth and stress tolerance in the Arabidopsis oxt1 mutant triggered by altered adenine metabolism. Mol Plant 5: 1310-1332.
    • (2012) Mol Plant , vol.5 , pp. 1310-1332
    • Sukrong, S.1    Yun, K.Y.2    Stadler, P.3    Kumar, C.4    Facciuolo, T.5
  • 35
    • 34447544333 scopus 로고    scopus 로고
    • Molecular and functional analysis of hypoxanthine-guanine phosphoribosyltransferase from Arabidopsis thaliana
    • DOI 10.1111/j.1469-8137.2007.02117.x
    • Liu X, Qian W, Liu X, Qin H, Wang D (2007) Molecular and functional analysis of hypoxanthine-guanine phosphoribosyltransferase from Arabidopsis thaliana. New Phytol 175: 448-461. (Pubitemid 47083889)
    • (2007) New Phytologist , vol.175 , Issue.3 , pp. 448-461
    • Liu, X.1    Qian, W.2    Liu, X.3    Qin, H.4    Wang, D.5
  • 36
    • 79959871745 scopus 로고    scopus 로고
    • The biochemistry of nitrogen mobilization: Purine ring catabolism
    • Werner AK, Witte CP (2011) The biochemistry of nitrogen mobilization: purine ring catabolism. Trends Plant Sci 16: 381-387.
    • (2011) Trends Plant Sci , vol.16 , pp. 381-387
    • Werner, A.K.1    Witte, C.P.2
  • 37
    • 0034545185 scopus 로고    scopus 로고
    • + symporters mediate the transport of vitamin H
    • + symporters mediate the transport of vitamin H. Plant J 24: 503-509.
    • (2000) Plant J , vol.24 , pp. 503-509
    • Ludwig, A.1    Stolz, J.2    Sauer, N.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.