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Volumn 7, Issue 10, 2012, Pages

Improving PacBio Long Read Accuracy by Short Read Alignment

Author keywords

[No Author keywords available]

Indexed keywords

POLYMER;

EID: 84867121279     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0046679     Document Type: Article
Times cited : (259)

References (11)
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  • 2
    • 84055216924 scopus 로고    scopus 로고
    • Sparse Linear Modeling of RNA-seq Data for Isoform Discovery and Abundance Estimation
    • Li JJ, Jiang CR, Brown BJ, Huang H, Bickel PJ, (2011) Sparse Linear Modeling of RNA-seq Data for Isoform Discovery and Abundance Estimation. Proc Natl Acad Sci. USA 108(50): 19867-19872.
    • (2011) Proc Natl Acad Sci , vol.108 , Issue.50 , pp. 19867-19872
    • Li, J.J.1    Jiang, C.R.2    Brown, B.J.3    Huang, H.4    Bickel, P.J.5
  • 3
    • 77952123055 scopus 로고    scopus 로고
    • Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
    • Trapnell C, Williams BA, Pertea G, Mortazavi A, Kwan G, et al. (2010) Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nature Biotechnology 28: 511-515.
    • (2010) Nature Biotechnology , vol.28 , pp. 511-515
    • Trapnell, C.1    Williams, B.A.2    Pertea, G.3    Mortazavi, A.4    Kwan, G.5
  • 4
    • 85027952706 scopus 로고    scopus 로고
    • Faster sequencers, larger datasets, new challenges
    • Mason CE, Elemento O, (2012) Faster sequencers, larger datasets, new challenges. Genome Biol. Mar 27 13(3): 314.
    • (2012) Genome Biol , vol.13 , Issue.3 , pp. 314
    • Mason, C.E.1    Elemento, O.2
  • 5
    • 79952178131 scopus 로고    scopus 로고
    • High-quality draft assemblies of mammalian genomes from massively parallel sequence data
    • Gnerre S, Maccallum I, Przybylski D, Ribeiro FJ, Burton JN, (2011) High-quality draft assemblies of mammalian genomes from massively parallel sequence data. Proc Natl Acad Sci USA. Jan 25 108(4): 1513-8.
    • (2011) Proc Natl Acad Sci USA , vol.108 , Issue.4 , pp. 1513-1518
    • Gnerre, S.1    Maccallum, I.2    Przybylski, D.3    Ribeiro, F.J.4    Burton, J.N.5
  • 7
    • 84878051921 scopus 로고    scopus 로고
    • Novoalign website Accessed 2012 Sep 8
    • Novoalign website. Available: http://www.novocraft.com/main/page.php?s=novoalign. Accessed 2012 Sep 8.
  • 8
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler Transform
    • Li H, Durbin R, (2009) Fast and accurate short read alignment with Burrows-Wheeler Transform. Bioinformatics 25: 1754-60.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 10
    • 84878077231 scopus 로고    scopus 로고
    • BLASR website Accessed 2012 Sep 8
    • BLASR website. Available: http://www.smrtcommunity.com/SMRT-Analysis/Algorithms/BLASR. Accessed 2012 Sep 8.
  • 11
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    • Hybrid error correction and de novo assembly of single-molecule sequencing reads
    • Koren S, Schatz MC, Walenz BP, Martin J, Howard JT, et al. (2012) Hybrid error correction and de novo assembly of single-molecule sequencing reads. Nature Biotechnology 30: 693-700.
    • (2012) Nature Biotechnology , vol.30 , pp. 693-700
    • Koren, S.1    Schatz, M.C.2    Walenz, B.P.3    Martin, J.4    Howard, J.T.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.