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Volumn 13, Issue 4, 2014, Pages 733-740

Comparison of Two MicroRNA quantification methods for assaying MicroRNA expression profiles in wheat (Triticum aestivum L.)

Author keywords

Deep sequencing; MicroRNA; Poly(A) RT qPCR; Stem loop RT qPCR; Triticum aestivum L.

Indexed keywords


EID: 84897932469     PISSN: 20953119     EISSN: None     Source Type: Journal    
DOI: 10.1016/S2095-3119(13)60362-7     Document Type: Article
Times cited : (4)

References (31)
  • 1
    • 0242361521 scopus 로고    scopus 로고
    • Regulation of flowering time and floral organ identity by a microRNA and its APETALA2-like target genes
    • Ackerman MJ, Sakai H Regulation of flowering time and floral organ identity by a microRNA and its APETALA2-like target genes. The Plant Cell 2003, 15:2730-2741.
    • (2003) The Plant Cell , vol.15 , pp. 2730-2741
    • Ackerman, M.J.1    Sakai, H.2
  • 2
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: Genomics, biogenesis, mechanism, and function
    • Bartel DP MicroRNAs: Genomics, biogenesis, mechanism, and function. Cell 2004, 116:281-297.
    • (2004) Cell , vol.116 , pp. 281-297
    • Bartel, D.P.1
  • 3
    • 79959964829 scopus 로고    scopus 로고
    • Infection processes and soft wheat response to root rot and crown rot caused by Fusarium culmorum
    • Beccari G, Covarelli L, Nicholson P Infection processes and soft wheat response to root rot and crown rot caused by Fusarium culmorum. Plant Pathology 2011, 60:671-684.
    • (2011) Plant Pathology , vol.60 , pp. 671-684
    • Beccari, G.1    Covarelli, L.2    Nicholson, P.3
  • 4
    • 17444365091 scopus 로고    scopus 로고
    • A computational view of microRNAs and their targets
    • Brown JR, Sanseau P A computational view of microRNAs and their targets. Drug Discovery Today 2005, 10:595-601.
    • (2005) Drug Discovery Today , vol.10 , pp. 595-601
    • Brown, J.R.1    Sanseau, P.2
  • 6
    • 1642366133 scopus 로고    scopus 로고
    • A microRNA as a translational repressor of APETALA2 in Arabidopsis flower development
    • Chen XM A microRNA as a translational repressor of APETALA2 in Arabidopsis flower development. Science 2004, 303:2022-2025.
    • (2004) Science , vol.303 , pp. 2022-2025
    • Chen, X.M.1
  • 8
    • 45849131260 scopus 로고    scopus 로고
    • Data mining for miRNAs and their targets in Triticeae
    • Dryanova A, Zakharov A, Gulick PJ Data mining for miRNAs and their targets in Triticeae. Genome 2008, 51:433-443.
    • (2008) Genome , vol.51 , pp. 433-443
    • Dryanova, A.1    Zakharov, A.2    Gulick, P.J.3
  • 9
    • 73249139165 scopus 로고    scopus 로고
    • Computational identification of microRNAs and their targets in wheat (Triticum aestivum L.)
    • (Series C: Life Sciences)
    • Han YS, Luan FL, Zhu HL, Shao Y, Chen AJ, Lu CW, Luo YB, Zhu BZ Computational identification of microRNAs and their targets in wheat (Triticum aestivum L.). Science in China 2009, 52:1091-1100. (Series C: Life Sciences),.
    • (2009) Science in China , vol.52 , pp. 1091-1100
    • Han, Y.S.1    Luan, F.L.2    Zhu, H.L.3    Shao, Y.4    Chen, A.J.5    Lu, C.W.6    Luo, Y.B.7    Zhu, B.Z.8
  • 10
    • 79951941475 scopus 로고    scopus 로고
    • MiRNA expression patterns of Triticum dicoccoides in response to shock drought stress
    • Kantar M, Lucas SJ, Budak H MiRNA expression patterns of Triticum dicoccoides in response to shock drought stress. Planta 2011, 233:471-484.
    • (2011) Planta , vol.233 , pp. 471-484
    • Kantar, M.1    Lucas, S.J.2    Budak, H.3
  • 11
    • 1542377275 scopus 로고    scopus 로고
    • Spatially restricted microRNA directs leaf polarity through ARGONAUTE1
    • Kidner CA, Martienssen RA Spatially restricted microRNA directs leaf polarity through ARGONAUTE1. Nature 2004, 428:81-84.
    • (2004) Nature , vol.428 , pp. 81-84
    • Kidner, C.A.1    Martienssen, R.A.2
  • 14
    • 77953489252 scopus 로고    scopus 로고
    • Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis
    • Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis. The Plant Journal 2010, 62:960-976.
    • (2010) The Plant Journal , vol.62 , pp. 960-976
    • Pantaleo, V.1    Szittya, G.2    Moxon, S.3    Miozzi, L.4    Moulton, V.5    Dalmay, T.6    Burgyan, J.7
  • 15
    • 79954419153 scopus 로고    scopus 로고
    • Identification and validation of conserved microRNAs along with their differential expression in roots of Vigna unguiculata grown under salt stress
    • Paul S, Kundu A, Pal A Identification and validation of conserved microRNAs along with their differential expression in roots of Vigna unguiculata grown under salt stress. Plant Cell Tissue and Organ Culture 2011, 105:233-242.
    • (2011) Plant Cell Tissue and Organ Culture , vol.105 , pp. 233-242
    • Paul, S.1    Kundu, A.2    Pal, A.3
  • 18
    • 30344456035 scopus 로고    scopus 로고
    • Facile means for quantifying microRNA expression by real-time PCR
    • Shi R, Chiang VL Facile means for quantifying microRNA expression by real-time PCR. Biotechniques 2005, 39:519-525.
    • (2005) Biotechniques , vol.39 , pp. 519-525
    • Shi, R.1    Chiang, V.L.2
  • 20
    • 33747505089 scopus 로고    scopus 로고
    • Posttranscriptional induction of two Cu/Zn superoxide dismutase genes in Arabidopsis in mediated by downregulation of miR398 and important for oxidative stress tolerance
    • Sunkar R, Kapoor A, Zhu JK Posttranscriptional induction of two Cu/Zn superoxide dismutase genes in Arabidopsis in mediated by downregulation of miR398 and important for oxidative stress tolerance. The Plant Cell 2006, 18:2051-2065.
    • (2006) The Plant Cell , vol.18 , pp. 2051-2065
    • Sunkar, R.1    Kapoor, A.2    Zhu, J.K.3
  • 21
    • 38849140922 scopus 로고    scopus 로고
    • Protocol: A highly sensitive RT-PCR method for detection and quantification of microRNAs
    • Varkonyi-Gasic E, Wu R, Wood M, Walton EF, Hellens RP Protocol: A highly sensitive RT-PCR method for detection and quantification of microRNAs. Plant Methods 2007, 3:12.
    • (2007) Plant Methods , vol.3 , pp. 12
    • Varkonyi-Gasic, E.1    Wu, R.2    Wood, M.3    Walton, E.F.4    Hellens, R.P.5
  • 22
    • 79952707191 scopus 로고    scopus 로고
    • Identification and characterization of maize microRNAs involved in very early stage of seed germination
    • Wang LW, Liu HH, Li DT, Chen HB Identification and characterization of maize microRNAs involved in very early stage of seed germination. BMC Genomics 2011, 12:154.
    • (2011) BMC Genomics , vol.12 , pp. 154
    • Wang, L.W.1    Liu, H.H.2    Li, D.T.3    Chen, H.B.4
  • 23
    • 70350029271 scopus 로고    scopus 로고
    • Novel microRNAs uncovered by deep sequencing of small RNA transcriptomes in bread wheat (Triticum aestivum L.) and Brachypodium distachyon (L.) Beauv
    • Wei B, Cai T, Zhang RZ, Li AL, Huo NX, Li S, Gu YQ, Vogel J, Jia JZ, Qi YJ Novel microRNAs uncovered by deep sequencing of small RNA transcriptomes in bread wheat (Triticum aestivum L.) and Brachypodium distachyon (L.) Beauv. Functional & Integrative Genomics 2009, 9:499-511.
    • (2009) Functional & Integrative Genomics , vol.9 , pp. 499-511
    • Wei, B.1    Cai, T.2    Zhang, R.Z.3    Li, A.L.4    Huo, N.X.5    Li, S.6    Gu, Y.Q.7    Vogel, J.8    Jia, J.Z.9    Qi, Y.J.10
  • 24
    • 78751645766 scopus 로고    scopus 로고
    • Identification and characterization of microRNAs from citrus expressed sequence tags
    • Wu XM, Liu MY, Xu Q, Guo WW Identification and characterization of microRNAs from citrus expressed sequence tags. Tree Genetics & Genomes 2011, 7:117-133.
    • (2011) Tree Genetics & Genomes , vol.7 , pp. 117-133
    • Wu, X.M.1    Liu, M.Y.2    Xu, Q.3    Guo, W.W.4
  • 25
    • 77955498202 scopus 로고    scopus 로고
    • Diverse set of microRNAs are responsive to powdery mildew infection and heat stress in wheat (Triticum aestivum L.)
    • Xin MM, Wang Y, Yao YY, Xie CJ, Peng HR, Ni ZF, Sun QX Diverse set of microRNAs are responsive to powdery mildew infection and heat stress in wheat (Triticum aestivum L.). BMC Plant Biology 2010, 10:123.
    • (2010) BMC Plant Biology , vol.10 , pp. 123
    • Xin, M.M.1    Wang, Y.2    Yao, Y.Y.3    Xie, C.J.4    Peng, H.R.5    Ni, Z.F.6    Sun, Q.X.7
  • 26
    • 63349083143 scopus 로고    scopus 로고
    • Characterization and expression profiles of miRNAs in rice seeds
    • Xue LJ, Zhang JJ, Xue HW Characterization and expression profiles of miRNAs in rice seeds. Nucleic Acids Research 2009, 37:916-930.
    • (2009) Nucleic Acids Research , vol.37 , pp. 916-930
    • Xue, L.J.1    Zhang, J.J.2    Xue, H.W.3
  • 27
    • 79953115052 scopus 로고    scopus 로고
    • Differential miRNA expression in Rehmannia glutinosa plants subjected to continuous cropping
    • Yang YH, Chen XJ, Chen JY, Xu HX, Li J, Zhang ZY Differential miRNA expression in Rehmannia glutinosa plants subjected to continuous cropping. BMC Plant Biology 2011, 11:53.
    • (2011) BMC Plant Biology , vol.11 , pp. 53
    • Yang, Y.H.1    Chen, X.J.2    Chen, J.Y.3    Xu, H.X.4    Li, J.5    Zhang, Z.Y.6
  • 29
    • 77954442650 scopus 로고    scopus 로고
    • Identification and characterization of conserved microRNAs and their target genes in wheat (Triticum aestivum)
    • Yin ZJ, Shen FF Identification and characterization of conserved microRNAs and their target genes in wheat (Triticum aestivum). Genetics and Molecular Research 2010, 9:1186-1196.
    • (2010) Genetics and Molecular Research , vol.9 , pp. 1186-1196
    • Yin, Z.J.1    Shen, F.F.2
  • 30
    • 27844495281 scopus 로고    scopus 로고
    • Identification and characterization of now plant microRNAs using EST analysis
    • Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA Identification and characterization of now plant microRNAs using EST analysis. Cell Research 2005, 15:336-360.
    • (2005) Cell Research , vol.15 , pp. 336-360
    • Zhang, B.H.1    Pan, X.P.2    Wang, Q.L.3    Cobb, G.P.4    Anderson, T.A.5
  • 31
    • 55049118172 scopus 로고    scopus 로고
    • Identification of cold-inducible microRNAs in plants by transcriptom analysis
    • Zhou X, Wang G, Sutoh K, Zhu JK, Zhang W Identification of cold-inducible microRNAs in plants by transcriptom analysis. Biochimica et Biophysica Acta 2008, 1779:780-788.
    • (2008) Biochimica et Biophysica Acta , vol.1779 , pp. 780-788
    • Zhou, X.1    Wang, G.2    Sutoh, K.3    Zhu, J.K.4    Zhang, W.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.