-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
Altschul S, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
67650578441
-
Conserved and novel miRNAs in the legume Phaseolus vulgaris in response to stress
-
Arenas-Huertero C, Pérez B, Rabanal F, Blanco-Melo D, De la Rosa C, Estrada Navarrete G, Sanchez F, Covarrubias AA, Reyes JL (2009) Conserved and novel miRNAs in the legume Phaseolus vulgaris in response to stress. Plant Mol Biol 70: 385-401.
-
(2009)
Plant Mol Biol
, vol.70
, pp. 385-401
-
-
Arenas-Huertero, C.1
Pérez, B.2
Rabanal, F.3
Blanco-Melo, D.4
de la Rosa, C.5
Estrada Navarrete, G.6
Sanchez, F.7
Covarrubias, A.A.8
Reyes, J.L.9
-
3
-
-
0347444723
-
MicroRNAs: genomics, biogenesis, mechanism, and function
-
Bartel DP (2004) MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 116: 281-297.
-
(2004)
Cell
, vol.116
, pp. 281-297
-
-
Bartel, D.P.1
-
4
-
-
0036713508
-
Salinity tolerance of Phaseolus species during germination and early seedling growth
-
Bayuelo-Jimenez JS, Craig R, Lynch JP (2002) Salinity tolerance of Phaseolus species during germination and early seedling growth. Crop Sci 42: 1584-1594.
-
(2002)
Crop Sci
, vol.42
, pp. 1584-1594
-
-
Bayuelo-Jimenez, J.S.1
Craig, R.2
Lynch, J.P.3
-
5
-
-
3843089328
-
Detection of 91 potential conserved plant microRNAs in Arabidopsis thaliana and Oryza sativa identifies important target genes
-
Bonnet E, Wuyts J, Rouze′ P, van de Peer Y (2004) Detection of 91 potential conserved plant microRNAs in Arabidopsis thaliana and Oryza sativa identifies important target genes. Proc Natl Acad Sci USA 101: 11511-11516.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 11511-11516
-
-
Bonnet, E.1
Wuyts, J.2
Rouze, P.3
van de Peer, Y.4
-
6
-
-
0000439461
-
Nutritive value of cowpea
-
S. R. Singh and K. O. Rachie (Eds.), New York: Wiley
-
Bressani R (1985) Nutritive value of cowpea. In: Singh SR, Rachie KO (eds) Cowpea research, production and utilization. Wiley, New York, p 359.
-
(1985)
Cowpea Research, Production and Utilization
, pp. 359
-
-
Bressani, R.1
-
7
-
-
1642366133
-
A microRNA as a translational repressor of APETALA2 in Arabidopsis flower development
-
Chen X (2004) A microRNA as a translational repressor of APETALA2 in Arabidopsis flower development. Science 303: 2022-2025.
-
(2004)
Science
, vol.303
, pp. 2022-2025
-
-
Chen, X.1
-
8
-
-
26944437949
-
MicroRNA biogenesis and function in plants
-
Chen X (2005) MicroRNA biogenesis and function in plants. FEBS Lett 579: 5923-5931.
-
(2005)
FEBS Lett
, vol.579
, pp. 5923-5931
-
-
Chen, X.1
-
9
-
-
37549047103
-
Genetic analysis of salt stress responses in Asparagus Bean (Vigna unguiculata (L.) ssp. sesquipedalis Verdc.)
-
Chen C, Tao C, Peng H, Ding Y (2007) Genetic analysis of salt stress responses in Asparagus Bean (Vigna unguiculata (L.) ssp. sesquipedalis Verdc.). J Hered 98: 655-665.
-
(2007)
J Hered
, vol.98
, pp. 655-665
-
-
Chen, C.1
Tao, C.2
Peng, H.3
Ding, Y.4
-
10
-
-
77249116710
-
Identification of MicroRNAs in Wild Soybean (Glycine soja)
-
Chen R, Hu Z, Zhang H (2009) Identification of MicroRNAs in Wild Soybean (Glycine soja). J Integr Plant Biol 51: 1071-1079.
-
(2009)
J Integr Plant Biol
, vol.51
, pp. 1071-1079
-
-
Chen, R.1
Hu, Z.2
Zhang, H.3
-
11
-
-
57749199958
-
Differential expression of miRNAs in response to salt stress in maize roots
-
Ding D, Zhang L, Wang H, Liu Z, Zhang Z, Zheng Y (2009) Differential expression of miRNAs in response to salt stress in maize roots. Ann Bot 103: 29-38.
-
(2009)
Ann Bot
, vol.103
, pp. 29-38
-
-
Ding, D.1
Zhang, L.2
Wang, H.3
Liu, Z.4
Zhang, Z.5
Zheng, Y.6
-
12
-
-
26944482389
-
Plantacyanin plays a role in reproduction in Arabidopsis
-
Dong J, Kim ST, Lord EM (2005) Plantacyanin plays a role in reproduction in Arabidopsis. Plant Physiol 138: 778-789.
-
(2005)
Plant Physiol
, vol.138
, pp. 778-789
-
-
Dong, J.1
Kim, S.T.2
Lord, E.M.3
-
13
-
-
34547115664
-
High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA Genes
-
Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC (2007) High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA Genes. PLoS ONE 2: e219.
-
(2007)
PLoS ONE
, vol.2
-
-
Fahlgren, N.1
Howell, M.D.2
Kasschau, K.D.3
Chapman, E.J.4
Sullivan, C.M.5
Cumbie, J.S.6
Givan, S.A.7
Law, T.F.8
Grant, S.R.9
Dangl, J.L.10
Carrington, J.C.11
-
14
-
-
63649146109
-
The quantification of tomato microRNAs response to viral infection by stem-loop real-time RT-PCR
-
Feng J, Wang K, Liu X, Chen S, Chen J (2009) The quantification of tomato microRNAs response to viral infection by stem-loop real-time RT-PCR. Gene 437: 14-21.
-
(2009)
Gene
, vol.437
, pp. 14-21
-
-
Feng, J.1
Wang, K.2
Liu, X.3
Chen, S.4
Chen, J.5
-
15
-
-
0035925062
-
Regulation of the CCAAT-Binding NF-Y subunits in Arabidopsis thaliana
-
Gusmaroli G, Tonelli C, Mantovani R (2001) Regulation of the CCAAT-Binding NF-Y subunits in Arabidopsis thaliana. Gene 264: 173-185.
-
(2001)
Gene
, vol.264
, pp. 173-185
-
-
Gusmaroli, G.1
Tonelli, C.2
Mantovani, R.3
-
19
-
-
4344637081
-
Arabidopsis micro-RNA biogenesis through Dicer-like 1 protein functions
-
Kurihara Y, Watanabe Y (2004) Arabidopsis micro-RNA biogenesis through Dicer-like 1 protein functions. Proc Natl Acad Sci USA 101: 12753-12758.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 12753-12758
-
-
Kurihara, Y.1
Watanabe, Y.2
-
20
-
-
18844373063
-
Computational identification of novel family members of microRNA genes in Arabidopsis thaliana and Oryza sativa
-
Li Y, Li W, Jin YX (2005) Computational identification of novel family members of microRNA genes in Arabidopsis thaliana and Oryza sativa. Acta Biochim Biophys Sin (Shanghai) 37: 75-87.
-
(2005)
Acta Biochim Biophys Sin (Shanghai)
, vol.37
, pp. 75-87
-
-
Li, Y.1
Li, W.2
Jin, Y.X.3
-
21
-
-
33947411951
-
Computational identification of novel microRNAs and targets in Brassica napus
-
Liang XF, Huang SQ, Guo K, Xiang AL, Zhu YY, Nie L, Yang ZM (2007) Computational identification of novel microRNAs and targets in Brassica napus. FEBS Lett 581: 1464-1474.
-
(2007)
FEBS Lett
, vol.581
, pp. 1464-1474
-
-
Liang, X.F.1
Huang, S.Q.2
Guo, K.3
Xiang, A.L.4
Zhu, Y.Y.5
Nie, L.6
Yang, Z.M.7
-
22
-
-
23844530681
-
Asymmetry of intronic pre-miRNA structures in functional RISC assembly
-
Lin SL, Chang D, Ying SY (2005) Asymmetry of intronic pre-miRNA structures in functional RISC assembly. Gene 356: 32-38.
-
(2005)
Gene
, vol.356
, pp. 32-38
-
-
Lin, S.L.1
Chang, D.2
Ying, S.Y.3
-
23
-
-
42449109504
-
Microarray-based analysis of stress-regulated microRNAs in Arabidopsis thaliana
-
Liu HH, Tian X, Li YJ, Wu CA, Zheng CC (2008) Microarray-based analysis of stress-regulated microRNAs in Arabidopsis thaliana. RNA 14: 836-843.
-
(2008)
Rna
, vol.14
, pp. 836-843
-
-
Liu, H.H.1
Tian, X.2
Li, Y.J.3
Wu, C.A.4
Zheng, C.C.5
-
24
-
-
24644490196
-
Elucidation of the small RNA component of the transcriptome
-
Lu C, Tej SS, Luo S, Haudenschild CD, Meyers BC, Green PJ (2005) Elucidation of the small RNA component of the transcriptome. Science 309: 1567-1569.
-
(2005)
Science
, vol.309
, pp. 1567-1569
-
-
Lu, C.1
Tej, S.S.2
Luo, S.3
Haudenschild, C.D.4
Meyers, B.C.5
Green, P.J.6
-
25
-
-
47249095055
-
Stress-responsive microRNAs in Populus
-
Lu S, Sun YH, Chiang VL (2008) Stress-responsive microRNAs in Populus. Plant J 55: 131-151.
-
(2008)
Plant J
, vol.55
, pp. 131-151
-
-
Lu, S.1
Sun, Y.H.2
Chiang, V.L.3
-
26
-
-
33745271035
-
Functions of microRNAs and related small RNAs in plants
-
Mallory AC, Vaucheret H (2006) Functions of microRNAs and related small RNAs in plants. Nat Genet 38: S31-S36.
-
(2006)
Nat Genet
, vol.38
-
-
Mallory, A.C.1
Vaucheret, H.2
-
27
-
-
24944493388
-
MicroRNA-directed regulation of Arabidopsis Auxin Response Factor17 is essential for proper development and modulates expression of early auxin response genes
-
Mallory AC, Bartel DP, Bartel B (2005) MicroRNA-directed regulation of Arabidopsis Auxin Response Factor17 is essential for proper development and modulates expression of early auxin response genes. Plant Cell 17: 1360-1375.
-
(2005)
Plant Cell
, vol.17
, pp. 1360-1375
-
-
Mallory, A.C.1
Bartel, D.P.2
Bartel, B.3
-
28
-
-
0242275361
-
Contribution of biological nitrogen fixation to cowpea: a strategy for improving grain yield in the semi-arid region of Brazil
-
Martins LMV, Xavier GR, Rangel FW, Ribeiro JRA, Neves MCP, Morgado LB, Rumjanek NG (2003) Contribution of biological nitrogen fixation to cowpea: a strategy for improving grain yield in the semi-arid region of Brazil. Biol Fertil Soils 38: 333-339.
-
(2003)
Biol Fertil Soils
, vol.38
, pp. 333-339
-
-
Martins, L.M.V.1
Xavier, G.R.2
Rangel, F.W.3
Ribeiro, J.R.A.4
Neves, M.C.P.5
Morgado, L.B.6
Rumjanek, N.G.7
-
29
-
-
60149090481
-
Criteria for annotation of plant MicroRNAs
-
Meyers BC, Axtell MJ, Bartel B et al (2008) Criteria for annotation of plant MicroRNAs. Plant Cell 20: 3186-3190.
-
(2008)
Plant Cell
, vol.20
, pp. 3186-3190
-
-
Meyers, B.C.1
Axtell, M.J.2
Bartel, B.3
-
30
-
-
0027811507
-
Physiological processes limiting plant growth in saline soils: some dogmas and hypothesis
-
Munns R (1993) Physiological processes limiting plant growth in saline soils: some dogmas and hypothesis. Plant Cell Environ 16: 15-24.
-
(1993)
Plant Cell Environ
, vol.16
, pp. 15-24
-
-
Munns, R.1
-
31
-
-
77951539258
-
Symbiotic functioning and bradyrhizobial biodiversity of cowpea (Vigna unguiculata L. Walp.) in Africa
-
doi: 10. 1186/1471-2180-10-89
-
Pule-Meulenberg F, Belane AK, Krasova-Wade T, Dakora FD (2010) Symbiotic functioning and bradyrhizobial biodiversity of cowpea (Vigna unguiculata L. Walp.) in Africa. BMC Microbiol. doi: 10. 1186/1471-2180-10-89.
-
(2010)
BMC Microbiol
-
-
Pule-Meulenberg, F.1
Belane, A.K.2
Krasova-Wade, T.3
Dakora, F.D.4
-
32
-
-
0036645146
-
MicroRNAs in plants
-
Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP (2002) MicroRNAs in plants. Genes Dev 16: 1616-1626.
-
(2002)
Genes Dev
, vol.16
, pp. 1616-1626
-
-
Reinhart, B.J.1
Weinstein, E.G.2
Rhoades, M.W.3
Bartel, B.4
Bartel, D.P.5
-
33
-
-
44949231424
-
Analyzing real-time PCR data by the comparative CT method
-
Schmittgen TD, Livak KJ (2008) Analyzing real-time PCR data by the comparative CT method. Nat Protoc 3: 1101-1108.
-
(2008)
Nat Protoc
, vol.3
, pp. 1101-1108
-
-
Schmittgen, T.D.1
Livak, K.J.2
-
34
-
-
42149177744
-
The microRNA regulated SBP-box genes SPL9 and SPL15 control shoot maturation in Arabidopsis
-
Schwarz S, Grande AV, Bujdoso N, Saedler H, Huijser P (2008) The microRNA regulated SBP-box genes SPL9 and SPL15 control shoot maturation in Arabidopsis. Plant Mol Biol 67: 183-195.
-
(2008)
Plant Mol Biol
, vol.67
, pp. 183-195
-
-
Schwarz, S.1
Grande, A.V.2
Bujdoso, N.3
Saedler, H.4
Huijser, P.5
-
36
-
-
33747505089
-
Posttranscriptional induction of two Cu/Zn superoxide dismutase genes in Arabidopsis is mediated by downregulation of miR398 and important for oxidative stress tolerance
-
Sunkar R, Kapoor A, Zhu JK (2006) Posttranscriptional induction of two Cu/Zn superoxide dismutase genes in Arabidopsis is mediated by downregulation of miR398 and important for oxidative stress tolerance. Plant Cell 18: 2051-2065.
-
(2006)
Plant Cell
, vol.18
, pp. 2051-2065
-
-
Sunkar, R.1
Kapoor, A.2
Zhu, J.K.3
-
37
-
-
34347263491
-
Small RNAs as big players in plant abiotic stress responses and nutrient deprivation
-
Sunkar R, Chinnusamy V, Zhu J, Zhu JK (2007) Small RNAs as big players in plant abiotic stress responses and nutrient deprivation. Trends Plant Sci 12: 301-309.
-
(2007)
Trends Plant Sci
, vol.12
, pp. 301-309
-
-
Sunkar, R.1
Chinnusamy, V.2
Zhu, J.3
Zhu, J.K.4
-
38
-
-
0347300280
-
Plant responses to drought, salinity and extreme temperature towards genetic engineering for stress tolerance
-
Wang W, Vinocur B, Altman A (2003) Plant responses to drought, salinity and extreme temperature towards genetic engineering for stress tolerance. Planta 218: 1-14.
-
(2003)
Planta
, vol.218
, pp. 1-14
-
-
Wang, W.1
Vinocur, B.2
Altman, A.3
-
39
-
-
12744262431
-
Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets
-
Wang XJ, Reyes JL, Chua NH, Gaasterland T (2004) Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets. Genome Biol 5: R65.
-
(2004)
Genome Biol
, vol.5
-
-
Wang, X.J.1
Reyes, J.L.2
Chua, N.H.3
Gaasterland, T.4
-
40
-
-
57849145093
-
Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules
-
Wang Y, Li P, Cao X, Wang X, Zhang A, Li X (2009) Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules. Biochem Biophys Res Commun 378: 799-803.
-
(2009)
Biochem Biophys Res Commun
, vol.378
, pp. 799-803
-
-
Wang, Y.1
Li, P.2
Cao, X.3
Wang, X.4
Zhang, A.5
Li, X.6
-
41
-
-
70350029271
-
Novel microRNAs uncovered by deep sequencing of small RNA transcriptomes in bread wheat (Triticum aestivum L.) and Brachypodium distachyon (L.) Beauv
-
Wei B, Cai T, Zhang R, Li A, Huo N, Li S, Gu QY, Vogel J, Jia J, Qi Y, Mao L (2009) Novel microRNAs uncovered by deep sequencing of small RNA transcriptomes in bread wheat (Triticum aestivum L.) and Brachypodium distachyon (L.) Beauv. Funct Integr Genomics 9: 499-511.
-
(2009)
Funct Integr Genomics
, vol.9
, pp. 499-511
-
-
Wei, B.1
Cai, T.2
Zhang, R.3
Li, A.4
Huo, N.5
Li, S.6
Gu, Q.Y.7
Vogel, J.8
Jia, J.9
Qi, Y.10
Mao, L.11
-
42
-
-
41949100147
-
Identification of conserved microRNAs and their target genes in tomato (Lycopersicon esculentum)
-
Yin Z, Li C, Han X, Shen F (2008) Identification of conserved microRNAs and their target genes in tomato (Lycopersicon esculentum). Gene 414: 60-66.
-
(2008)
Gene
, vol.414
, pp. 60-66
-
-
Yin, Z.1
Li, C.2
Han, X.3
Shen, F.4
-
43
-
-
24944491201
-
A pathway for the biogenesis of trans-acting siRNAs in Arabidopsis
-
Yoshikawa M, Peragine A, Park MY, Poethig RS (2005) A pathway for the biogenesis of trans-acting siRNAs in Arabidopsis. Genes Dev 19: 2164-2175.
-
(2005)
Genes Dev
, vol.19
, pp. 2164-2175
-
-
Yoshikawa, M.1
Peragine, A.2
Park, M.Y.3
Poethig, R.S.4
-
44
-
-
77950360655
-
Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants
-
Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M (2009) Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants. Nucleic Acids Res 38: 981-995.
-
(2009)
Nucleic Acids Res
, vol.38
, pp. 981-995
-
-
Zeng, C.1
Wang, W.2
Zheng, Y.3
Chen, X.4
Bo, W.5
Song, S.6
Zhang, W.7
Peng, M.8
-
45
-
-
29144527030
-
Plant microRNA: a small regulatory molecule with big impact
-
Zhang BH, Pan X, Cobb GP, Anderson TA (2006a) Plant microRNA: a small regulatory molecule with big impact. Dev Biol 289: 3-6.
-
(2006)
Dev Biol
, vol.289
, pp. 3-6
-
-
Zhang, B.H.1
Pan, X.2
Cobb, G.P.3
Anderson, T.A.4
-
46
-
-
33745156778
-
Identification of 188 conserved maize microRNAs and their targets
-
Zhang BH, Pan X, Anderson TA (2006b) Identification of 188 conserved maize microRNAs and their targets. FEBS Lett 580: 3753-3762.
-
(2006)
FEBS Lett
, vol.580
, pp. 3753-3762
-
-
Zhang, B.H.1
Pan, X.2
Anderson, T.A.3
-
47
-
-
30744468557
-
Evidence that miRNAs are different from other RNAs
-
Zhang BH, Pan XP, Cox B, Coob GP, Anderson TA (2006c) Evidence that miRNAs are different from other RNAs. Cell Mol Life Sci 63: 246-254.
-
(2006)
Cell Mol Life Sci
, vol.63
, pp. 246-254
-
-
Zhang, B.H.1
Pan, X.P.2
Cox, B.3
Coob, G.P.4
Anderson, T.A.5
-
48
-
-
33646830110
-
Conservation and divergence of plant microRNA genes
-
Zhang BH, Pan X, Cannon CH, Cobb GP, Anderson TA (2006d) Conservation and divergence of plant microRNA genes. Plant J. 46: 243-259.
-
(2006)
Plant J.
, vol.46
, pp. 243-259
-
-
Zhang, B.H.1
Pan, X.2
Cannon, C.H.3
Cobb, G.P.4
Anderson, T.A.5
-
49
-
-
33845601726
-
MicroRNAs and their regulatory roles in animals and plants
-
Zhang B, Wang QL, Pan XP (2007) MicroRNAs and their regulatory roles in animals and plants. J Cell Physiol 210: 279-289.
-
(2007)
J Cell Physiol
, vol.210
, pp. 279-289
-
-
Zhang, B.1
Wang, Q.L.2
Pan, X.P.3
-
50
-
-
56649120500
-
Identification of soybean microRNAs and their targets
-
Zhang BH, Pan X, Stellwag EJ (2008a) Identification of soybean microRNAs and their targets. Planta 229: 161-182.
-
(2008)
Planta
, vol.229
, pp. 161-182
-
-
Zhang, B.H.1
Pan, X.2
Stellwag, E.J.3
-
51
-
-
52449125294
-
Submergence-responsive MicroRNAs are potentially involved in the regulation of morphological and metabolic adaptations in maize root cells
-
Zhang Z, Wei L, Zou X, Tao Y, Liu Z, Zheng Y (2008b) Submergence-responsive MicroRNAs are potentially involved in the regulation of morphological and metabolic adaptations in maize root cells. Ann Bot 102: 509-519.
-
(2008)
Ann Bot
, vol.102
, pp. 509-519
-
-
Zhang, Z.1
Wei, L.2
Zou, X.3
Tao, Y.4
Liu, Z.5
Zheng, Y.6
-
52
-
-
55049118172
-
Identification of cold-inducible microRNAs in plants by transcriptome analysis
-
Zhou X, Wang G, Sutoh K, Zhu JK, Zhang W (2008) Identification of cold-inducible microRNAs in plants by transcriptome analysis. Biochim Biophys Acta 1779: 780-788.
-
(2008)
Biochim Biophys Acta
, vol.1779
, pp. 780-788
-
-
Zhou, X.1
Wang, G.2
Sutoh, K.3
Zhu, J.K.4
Zhang, W.5
-
53
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
Zuker M (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 31: 3406-3415.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3406-3415
-
-
Zuker, M.1
|