Microbial succession during thermophilic digestion: The potential of Methanosarcina sp.

PLoS ONE

Volumn 9, Issue 2, 2014, Pages

  Illmer, Paul ^a   Reitschuler, Christoph ^a   Wagner, Andreas Otto ^a   Schwarzenauer, Thomas ^a   Lins, Philipp ^a  

^a UNIVERSITY OF INNSBRUCK   (Austria)

Author keywords

[No Author keywords available]

Indexed keywords

ACETIC ACID; BACTERIAL DNA; BIOFUEL; METHANE;

ANAEROBIC DIGESTION; ARTICLE; BACTERIAL METABOLISM; BATCH FERMENTATION; BIOACCUMULATION; COMMUNITY SUCCESSION; DENATURING GRADIENT GEL ELECTROPHORESIS; DNA SEQUENCE; HYDROLYSIS; METHANOCULLEUS THERMOPHILUS; METHANOSARCINA; METHANOTHERMOBACTER THERMAUTOTROPHICUS; NONHUMAN; PH MEASUREMENT; POLYMERASE CHAIN REACTION; QUANTITATIVE ANALYSIS; THERMOPHILIC BACTERIUM; ANAEROBIC GROWTH; BIOSYNTHESIS; FERMENTATION; METABOLISM; MICROBIOLOGY; TEMPERATURE;

ANAEROBIOSIS; BIOFUELS; FERMENTATION; HYDROLYSIS; METHANE; METHANOSARCINA; TEMPERATURE;

EID: 84897745656     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0086967     Document Type: Article

References (40)

1. Weiland P (2010) Biogas production: Current state and perspectives. Appl Microbiol Biotechnol 85: 849-860.
2. Illmer P, Gstraunthaler G (2009) Effect of Seasonal changes in Quantities of biowaste on Full scale anaerobic digester performance. Waste Management 29: 162-167.
3. Illmer P, Schwarzenauer T, Malin C, Wagner AO, Miller LM, et al. (2009) Process parameters within a 750,000 litre anaerobic digester during a year of disturbed fermenter performance. Waste Manag 29: 1838-1843.
4. Supaphol S, Jenkins SN, Intomo P, Waite IS, O'Donnell AG (2011) Microbial community dynamics in mesophilic anaerobic co-digestion of mixed waste. Bioresource Technol 102: 4021-4027.
5. Chandra R, Takeuchi H, Hasegawa T (2012) Methane production from lignocellulosic agricultural crop waste: A review in context to second generation of biofuel production. Renewable and Sustainable Energy Reviews 16: 1462-1476.
6. Esposito G, Frunzo L, Giordano A, Liotta F, Panico A, et al. (2012) Anaerobic co-digestion of organic wastes. Reviews in Environmental Science and Biotechnology 11: 325-341.
7. Lins P, Malin C, Wagner AO, Illmer P (2010) Reduction of accumulated volatile fatty acids by an acetate-degrading enrichment culture. FEMS Microbiol Ecol 71: 469-478.
8. Wagner AO, Gstraunthaler G, Illmer P (2010) Utilisation of single added fatty acids by consortia of digester sludge in batch culture. Waste Manag 30: 1822-1827.
9. Malin C, Illmer P (2008) Ability of DNA-content and DGGE analysis to reflect the performance condition of an anaerobic biowaste fermenter. Microbial Res 163: 503-511.
10. Demirel B, Scherer P (2008) The roles of acetotrophic and hydrogenotrophic methanogens during anaerobic conversion of biomass to methane: A review. Reviews in Environmental Science and Biotechnology 7: 173-190.
11. De Vrieze J, Hennebel T, Boon N, Verstraete W (2012) Methanosarcina: The rediscovered methanogen for heavy duty biomethanation. Bioresource Technol 112: 1-9.
12. Lins P, Reitschuler C, Illmer P (2012) Development and evaluation of inocula combating high acetate concentrations during the start-up of an anaerobic digestion. Bioresource Technol 110: 167-173.
13. Wagner AO, Hohlbrugger P, Lins P, Illmer P (2012) Effects of different nitrogen sources on the biogas production - a lab-scale investigation. Microbial Res 167: 630-636.
14. Yu Y, Lee C, Hwang S (2004) Group-specific primer and probe sets to detect methanogenic communities using quantitative real-time polymerase chain reaction. Biotechnology and Bioengineering 89: 670-679.
15. Muyzer G, DeWaal EC, Uitterlinden AG (1993) Profiling of complex microbial populations by denaturing gradient gel electrophoresis of polymerase chain reaction-amplified genes coding for 16S rRNA. Applied and Environmental Microbiology 59: 695-700. (Pubitemid 23072343)
16. Heuer H, Krsek M, Baker P, Smalla K, Wellington EMH (1997) Analysis of actinomycete communities by specific amplification of genes encoding 16S rRNA and gel-electrophoretic separation in denaturing gradients. Applied and Environmental Microbiology 63: 3233-3241. (Pubitemid 27337820)
17. Großkopf R, Janssen PH, Liesack W (1998) Diversity and structure of the methanogenic community in anoxic rice paddy soil microcosms as examined by cultivation and direct 16S rRNA gene sequence retrieval. Applied and Environmental Microbiology 64: 960-969. (Pubitemid 28108471)
18. Watanabe T, Asakawa S, Nakamura A, Nagaoka K, Kimura M (2004) DGGE method for analyzing 16S rDNA of methanogenic archaeal community in paddy field soil. FEMS Microbiol Lett 232: 153-163. (Pubitemid 38445009)
19. Sekiguchi H, Tomioka N, Nakahara T, Uchiyama H (2001) A single band does not always represent single bacterial strains in denaturing gradient gel electrophoresis analysis. Biotechnology Letters 23: 1205-1208. (Pubitemid 32781187)
20. Reitschuler C, Illmer P (2012) Evaluation of primers used for the investigation of methanogenic and methanotrophic communities and the potential for improvement of commonly used qPCR applications. World Journal of Microbiology and Biotechnology, in press DOI 10.1007/s11274-013-1450-x.
21. Pereyra LP, Hiibel SR, Prieto Riquelme MV, Reardon KF, Pruden A (2010) Detection and quantification of functional genes of cellulose- degrading, fermentative, and sulfate-reducing bacteria and methanogenic archaea. Applied and Environmental Microbiology 76: 2192-2202.
22. Wagner AO, Malin C, Illmer P (2009) Application of Denaturing High-Performance Liquid Chromatography in Microbial Ecology: Fermentor Sludge, Compost, and Soil Community Profiling. Applied and Environmental Microbiology 75: 956-964.
23. White DC, Davis WM, Nickels JS, King JD, Bobbie RJ (1979) Determination of the sedimentary microbial biomass by extractible lipid phosphate. Oecologia 40: 51-62.
24. Sönnichsen M, Müller BW (1999) A rapid and quantitative method for total fatty acid analysis of fungi and other biological samples. Lipids 34: 1347-1349.
25. Schwarzenauer T, Lins P, Reitschuler C, Illmer P (2012) The use of FAME analyses to discriminate between different strains of Geotrichum klebahnii with different viabilities. World J Microbiol Biotechnol 28: 755-759.
26. Lins P, Illmer P (2009) Thermodynamische Aspekte der anaeroben Vergärung. Müll und Abfall 12: 604-608.
27. Lü F, Hao L, Guan D, Qi Y, Shao L, et al. (2013) Synergetic stress of acids and ammonium on the shift in the methanogenic pathways during thermophilic anaerobic digestion of organics. Water Res 47: 2297-2306.
28. Hao L, Lü F, Li L, Wu Q, Shao L, et al. (2013) Self-adaption of methane-producing communities to pH disturbance at different acetate concentrations by shifting pathways and population interaction. Bioresource Technol 140: 319-327.
29. 2 on methanogenesis from acetate or methanol in Methanosarcina sp. Applied and Environmental Microbiology 46: 348-355.
30. Lins P, Reitschuler C, Illmer P (2014) Methanosarcina spp., the key to relieve the start-up of a thermophilic anaerobic digestion suffering from high acetic acid loads. Bioresource Technol 152: 347-354.
31. Lockhart RJ, Van Dyke MI, Beadle IR, Humphreys P, McCarthy AJ (2006) Molecular biological detection of anaerobic gut fungi (Neocallimastigales) from landfill sites. Applied and Environmental Microbiology 72: 5659-5661.
32. Mountfort DO, Orpin CG (1994) Anaerobic fungi: biology, ecology and function. New York: Marcel Dekker, Inc.
33. Chae KJ, Jang A, Yim SK, Kim IS (2008) The effects of digestion temperature and temperature shock on the biogas yields from the mesophilic anaerobic digestion of swine manure. Bioresource Technol 99: 1-6. (Pubitemid 47516657)
34. Nielsen HB, Heiske S (2012) Anaerobic digestion of macroalgae: methane potentials, pre-treatment, inhbition and co-digestion. Water Sci Tech 64: 1723-1729.
35. Goevert D, Conrad R (2009) Effect of substrate concentration on carbon isotope fractionation during acetoclastic methanogenesis by Methanosarcina barkeri and M.acetivorans and in rice field soil. Applied and Environmental Microbiology 75: 2605-2612.
36. Kulkarni G, Kridelbaugh DM, Guss AM, Metcalf WW (2009) Hydrogen is a preferred intermediate in the energy-conserving electron transport chain of Methanosarcina barkeri. PNAS 106: 15915-15920.
37. Beckmann S, Lueders T, Krüger M, von Netzer F, Engelen B, et al. (2011) Acetogens and acetoclastic Methanosarcinales govern methane formation in abandoned coal mines. Applied and Environmental Microbiology 77: 3749-3756.
38. Shimada H, Nemoto N, Shida Y, Oshima T, Yamagishi A (2008) Effects of pH and temperature on the composition of polar lipids in Thermoplasma acidophilum HO-62. J Bacteriol 190: 5404-5411.
39. Westermann P, Ahring BK, Mah RA (1989) Threshold acetate concentrations for acetate catabolism by aceticlastic methanogenic bacteria. Applied and Environmental Microbiology 55: 514-515.
40. Clarens M, Moletta R (1990) Kinetic studies of acetate fermentation by Methanosarcina sp. MSTA-1. Appl Microbiol Biotechnol 33: 239-244. (Pubitemid 20233058)