Aquatic hyphomycete species are screened by the hyporheic zone of woodland streams

Applied and Environmental Microbiology

Volumn 80, Issue 6, 2014, Pages 1949-1960

  Cornut, Julien ^a,c   Chauvet, Eric ^a   Mermillod Blondin, Florian ^b   Assemat, Fiona ^a   Elger, Arnaud ^a  

^a CNRS   (France)

^b UNIVERSITÉ LYON 1   (France)

^c UNIVERSITÉ DE LORRAINE   (France)

Author keywords

[No Author keywords available]

Indexed keywords

AQUATIC HYPHOMYCETES; IN-LABORATORY EXPERIMENTS; LABORATORY EXPERIMENTS; ORGANIC MATTER DYNAMICS; PHYSICOCHEMICAL CONDITIONS; PHYSIOLOGICAL STRESS; SELECTION PRESSURES; STREAMBED SEDIMENTS;

ECOSYSTEMS; EXPERIMENTS; FUNGI; LAKES; PORE SIZE; SEDIMENTS; STREAM FLOW; WATER FILTRATION;

AQUATIC ORGANISMS;

AQUATIC COMMUNITY; COMMUNITY STRUCTURE; FUNGUS; HYPORHEIC ZONE; LABORATORY METHOD; LEAF LITTER; MICROCOSM; PHYSICOCHEMICAL PROPERTY; PHYSIOLOGICAL RESPONSE; PORE SPACE; SPORE; STREAM; STREAM BED; WOODLAND;

ARTICLE; BACTERIAL COUNT; BIODIVERSITY; CLASSIFICATION; DEUTEROMYCETES; FUNGUS SPORE; ISOLATION AND PURIFICATION; MICROBIOLOGY; RIVER;

BIODIVERSITY; COLONY COUNT, MICROBIAL; MITOSPORIC FUNGI; RIVERS; SPORES, FUNGAL;

EID: 84897627851     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.03024-13     Document Type: Article

References (77)

1. Fisher SG, Likens GE. 1973. Energy flow in Bear Brook, New Hampshire: an integrative approach to stream ecosystem metabolism. Ecol. Monogr. 43:421-439. http://dx.doi.org/10.2307/1942301.
2. Kaushik NK, Hynes HBN. 1968. Experimental study on the role of autumn shed leaves in aquatic environments. J. Ecol. 52:229-243.
3. Webster JR, Meyer JL. 1997. Organic matter budgets for streams: a synthesis. J. N. Am. Benthol. Soc. 16:141-161. http://dx.doi.org/10.2307/1468247.
4. Herbst GN. 1980. Effects of burial on food value and consumption of leaf detritus by aquatic invertebrates in a lowland forest stream. Oikos 35:411-424. http://dx.doi.org/10.2307/3544658.
5. Metzler GM, Smock LA. 1990. Storage and dynamics of subsurface detritus in a sandbottomed stream. Can. J. Fish. Aquat. Sci. 47:588-594. http://dx.doi.org/10.1139/f90-067.
6. Naegeli MW, Hartmann U, Meyer EI, Uehlinger U. 1995. POMdynamics and community respiration in the sediments of a floodprone prealpine river (Necker, Switzerland). Arch. Hydrobiol. 133:339-347.
7. Orghidan T. 1959. Ein neuer Lebensraum des unterirdischen Wassers: der hyporheische Biotop. Arch. Hydrobiol. 55:392-414.
8. Cornut J, Elger A, Greugny A, Bonnet M, Chauvet E. 2012. Coarse particulate organic matter in the interstitial zone of three French headwater streams. Ann. Limnol. Int. J. Limnol. 48:303-313. http://dx.doi.org/10.1051/limn/2012019.
9. Kaushik NK, Hynes HBN. 1971. The fate of the dead leaves that fall into streams. Arch. Hydrobiol. 68:465-515.
10. Bärlocher F, Kendrick B. 1976. Hyphomycetes as intermediaries of energy flow in streams, p 435-446. In Jones EBG (ed), Recent advances in aquatic mycology. Elek, London, United Kingdom.
11. Bärlocher F. 1985. The role of fungi in the nutrition of stream invertebrates. Bot. J. Linn. Soc. 91:83-94. http://dx.doi.org/10.1111/j.1095-8339.1985.tb01137.x.
12. Suberkropp K. 1992. Interaction with invertebrates, p 118-134. In Bärlocher F (ed), The ecology of aquatic hyphomycetes. Springer-Verlag, New York, NY.
13. Gulis V, Kuehn KA, Suberkropp K. 2009. Fungi, p 233-243. In Likens G (ed), Encyclopedia of inland waters, vol 3. Elsevier, Oxford, United Kingdom.
14. Gessner MO. 1997. Litter breakdown in rivers and streams. Limnética 13:33-44.
15. Findlay SE, Arsuffi TL. 1989. Microbial growth and detritus transformations during decomposition of leaf litter in a stream. Freshw. Biol. 21:261-269. http://dx.doi.org/10.1111/j.1365-2427.1989.tb01364.x.
16. Suberkropp K. 1991. Relationships between growth and sporulation of aquatic hyphomycetes on decomposing leaf litter. Mycol. Res. 95:843-850. http://dx.doi.org/10.1016/S0953-7562(09)80048-8.
17. Sridhar KR, Bärlocher F. 2000. Initial colonization, nutrient supply, and fungal activity on leaves decaying in streams. Appl. Environ. Microbiol. 66:1114-1119. http://dx.doi.org/10.1128/AEM.66.3.1114-1119.2000.
18. Iqbal SH, Webster J. 1973. The trapping of aquatic hyphomycete spores by air bubbles. Trans. Br. Mycol. Soc. 60:37-48. http://dx.doi.org/10.1016/S0007-1536(73)80057-9.
19. Webster J, Descals E. 1981. Morphology, distribution, and ecology of spore fungi in freshwater habitats, p 295-355. In Cole GC, Kendrick B (ed), Biology of spore fungi. Academic Press, London, United Kingdom.
20. Bärlocher F. 1992. Research on aquatic hyphomycetes: historical background and overview, p 1-11. In Bärlocher F (ed), The ecology of aquatic hyphomycetes. Springer-Verlag, New York, NY.
21. Suberkropp K. 1997. Annual production of leaf-decaying fungi in a woodland stream. Freshw. Biol. 38:169-178. http://dx.doi.org/10.1046/j.1365-2427.1997.00203.x.
22. Bärlocher F. 2009. Reproduction and dispersal in aquatic hyphomycetes. Mycoscience 50:3-8. http://dx.doi.org/10.1007/S10267-008-0449-X.
23. Sridhar KR, Bärlocher F. 1997. Water chemistry and sporulation by aquatic hyphomycetes. Mycol. Res. 101:591-596. http://dx.doi.org/10.1017/S0953756296003024.
24. Cornut J, Elger A, Lambrigot D, Marmonier P, Chauvet E. 2010. Early stages of leaf decomposition are mediated by aquatic fungi in the hyporheic zone of woodland streams. Freshw. Biol. 55:2541-2556. http://dx.doi.org/10.1111/j.1365-2427.2010.02483.x.
25. Dang CK, Gessner MO, Chauvet E. 2007. Influence of spore traits and leaf structure on attachment success of aquatic hyphomycetes on leaf litter. Mycologia 99:24-32. http://dx.doi.org/10.3852/mycologia.99.1.24.
26. Webster J. 1987. Convergent evolution and the functional significance of spore shape in aquatic and semi-aquatic fungi, p 191-201. In Rayner ADM, Brasier CM, Moore D (ed), Evolutionary biology of the fungi. University Press, Cambridge, United Kingdom.
27. Kearns SG, Bärlocher F. 2008. Leaf surface roughness influences colonization success of aquatic hyphomycete spore. Fungal Ecol. 1:13-18. http://dx.doi.org/10.1016/j.funeco.2007.07.001.
28. Navel S, Mermillod-Blondin F, Montuelle B, Chauvet E, Simon L, Marmonier P. 2011. Water-sediment exchanges control microbial processes associated with leaf litter degradation in the hyporheic zone: a microcosm study. Microb. Ecol. 61:968-979. http://dx.doi.org/10.1007/s00248-010-9774-7.
29. Medeiros AO, Pascoal C, Graça MAS. 2009. Diversity and activity of aquatic fungi under low oxygen conditions. Freshw. Biol. 54:142-149. http://dx.doi.org/10.1111/j.1365-2427.2008.02101.x.
30. Rajashekhar M, Kaveriappa KM. 2003. Diversity of aquatic hyphomycetes in the aquatic ecosystems of the Western Ghats of India. Hydrobiologia 501:167-177. http://dx.doi.org/10.1023/A:1026239917232.
31. Field JI, Webster J. 1983. Anaerobic survival of aquatic fungi. Trans. Br. Mycol. Soc. 81:365-369. http://dx.doi.org/10.1016/S0007-1536(83)80088-6.
32. Laitung B, Pretty JL, Chauvet E, Dobson M. 2002. Response of aquatic hyphomycete communities to enhanced stream retention in areas impacted by commercial forestry. Freshw. Biol. 47:313-324. http://dx.doi.org/10.1046/j.1365-2427.2002.00801.x.
33. Baxter C, Hauer RF, Woessner WW. 2003. Measuring groundwater-stream water exchange: new techniques for installing minipiezometers and estimating hydraulic conductivity. Trans. Am. Fish. Soc. 132:493-502. http://dx.doi.org/10.1577/1548-8659(2003)1320493:MGWENT2.0.CO;2.
34. Chauvet E. 1990. Hyphomycètes aquatiques du sud-ouest de la France. Gaussenia 6:3-31.
35. Gulis V, Marvanová L, Descals E. 2005. An illustrated key to the common temperate species of aquatic hyphomycetes, p 185-188. In Graça MAS, Bärlocher F, Gessner MO (ed), Methods to study litter decomposition-a practical guide. Springer, Dordrecht, Netherlands.
36. Griebler C. 1996. Some applications for the DMSO-reduction method as a new tool to determine the microbial activity in water-saturated sediments. Arch. Hydrobiol. Suppl. 113:405-410.
37. Mermillod-Blondin F, Mauclaire L, Montuelle B. 2005. Use of slow filtration columns to assess oxygen respiration, consumption of dissolved organic carbon, nitrogen transformations and microbial parameters in hyporheic sediments. Water Res. 39:1687-1698. http://dx.doi.org/10.1016/j.watres.2005.02.003.
38. Navel S, Mermillod-Blondin F, Montuelle B, Chauvet E, Simon L, Piscart C, Marmonier P. 2010. Interactions between fauna and sediment control plant matter breakdown in river sediments. Freshw. Biol. 55:753-766. http://dx.doi.org/10.1111/j.1365-2427.2009.02315.x.
39. Claret C, Marmonier P, Bravard J-P. 1998. Seasonal dynamics of nutri-ent and biofilms in interstitial habitats of two contrasting riffles in a regulated large river. Aquat. Sci. 60:33-55. http://dx.doi.org/10.1007/s000270050025.
40. Laitung B, Chauvet E. 2005. Vegetation diversity increases species richness of leaf decaying fungal communities in woodland streams. Arch. Hydrobiol. 164:217-235. http://dx.doi.org/10.1127/0003-9136/2005/0164-0217.
41. Suberkropp K, Chauvet E. 1995. Regulation of leaf breakdown by fungi in streams: influences of water chemistry. Ecology 76:1433-1445. http://dx.doi.org/10.2307/1938146.
42. Triska FJ, Duff JH, Avanzino RJ. 1993. The role of water exchange between a stream channel and its hyporheic zone in nitrogen cycling at the terrestrial-aquatic interface. Hydrobiologia 251:167-184. http://dx.doi.org/10.1007/BF00007177.
43. Morrice JA, Dahm CN, Valett HM. 2000. Terminal electron accepting processes in the alluvial sediments of a headwater stream. J. N. Am. Benthol. Soc. 19:593-608. http://dx.doi.org/10.2307/1468119.
44. Peet RK. 1975. Relative diversity indices. Ecology 56:496-498. http://dx.doi.org/10.2307/1934984.
45. Wolda H. 1981. Similarity indices, sample size and diversity. Oecologia 50:296-302. http://dx.doi.org/10.1007/BF00344966.
46. Legendre P, Legendre L. 1998. Numerical ecology, 2nd English ed. Elsevier Science BV, Amsterdam, Netherlands.
47. StatSoft Inc. 2001. Statistica 6.0, electronic statistics textbook. http://www.statsoft.com/textbook/stathome.html.
48. R Development Core Team. 2007. R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. http://www.R-project.org.
49. Bärlocher F, Murdoch JH. 1989. Hyporheic biofilms-a potential food source for interstitial animals. Hydrobiologia 184:61-67. http://dx.doi.org/10.1007/BF00014302.
50. Bärlocher F, Nikolcheva LG, Wilson KP, Williams DD. 2006. Fungi in the hyporheic zone of a springbrook. Microb. Ecol. 52:708-715. http://dx.doi.org/10.1007/s00248-006-9102-4.
51. Bärlocher F, Seena S, Wilson K, Williams DD. 2008. Raised water temperature lowers diversity of hyporheic aquatic hyphomycetes. Freshw. Biol. 53:368-379. http://dx.doi.org/10.1111/j.1365-2427.2007.01899.x.
52. Smith JJ, Lake PS. 1993. The breakdown of buried and surface-placed leaf-litter in an upland stream. Hydrobiologia 271:141-148. http://dx.doi.org/10.1007/BF00005411.
53. Krauss G, Sridhar KR, Jung K, Wennrich R, Ehrman J, Bärlocher F. 2003. Aquatic hyphomycetes in polluted groundwater habitats of central Germany. Microb. Ecol. 45:329-339.
54. Park D. 1974. Accumulation of fungi by cellulose exposed in a river. Trans. Br. Mycol. Soc. 63:437-447. http://dx.doi.org/10.1016/S0007-1536(74)80090-2.
55. Knudsen GR, Stack JP. 1991. Modeling growth and dispersal of fungi in natural environments, p 625-645. In Arora DK, Rai B, Mukerji KG, Knudsen G (ed), Handbook of applied mycology. Marcel Dekker, New York, NY.
56. Read SJ, Moss ST, Jones EBJ. 1992. Attachment and germination of spore, p 135-151. In Bärlocher F (ed), The ecology of aquatic hyphomycetes. Springer-Verlag, New York, NY.
57. Au DWT, Jones EBJ, Moss ST, Hodgkiss IJ. 1996. The role of mucilage in the attachment of spore, germ tubes, and appressoria in the saprobic aquatic hyphomycetes Lemonniera aquatica and Mycocentrospora filiformis. Can. J. Bot. 74:1789-1800. http://dx.doi.org/10.1139/b96-216.
58. Cox PA. 1983. Search theory, random motion and the convergent evolution of pollen and spore morphology in aquatic plants. Am. Nat. 121:9-31. http://dx.doi.org/10.1086/284037.
59. Frost H. 1978. ONR technical report no. 6. Division of Applied Sciences, Harvard University, Cambridge, MA.
60. Nimmo JR. 2004. Porosity and pore size distribution, p 295-303. In Hillel D (ed), Encyclopedia of soils in the environment. Elsevier, London, United Kingdom.
61. Parmasto E, Parmasto I. 1992. Size and shape of basidiospores in the Hymenomycetes. Mycol. Helv. 5:47-78.
62. Kauserud H, Colman JE, Ryvarden L. 2008. Relationship between basidiospore size, shape and life history characteristics: a comparison of polypores. Fungal Ecol. 1:19-23. http://dx.doi.org/10.1016/j.funeco.2007.12.001.
63. Fischer MWF, Stolze Rybczynski JL, Cui YL, Money NP. 2010. How far and how fast can mushroom spores fly? Physical limits on ballisto spore size and discharge distance in the Basidiomycota. Fungal Biol. 114:669-675.
64. Hussein T, Norros V, Hakala J, Petäjä T, Aalto PP, Rannik U, Vesala T, Ovaskainen O. 2013. Species traits and inertial deposition of fungal spores. Aerosol Sci. 61:81-98. http://dx.doi.org/10.1016/j.jaerosci.2013.03.004.
65. Valett HM, Fisher SG, Stanley EH. 1990. Physical and chemical characteristics of the hyporheic zone of a Sonoran Desert stream. J. N. Am. Benthol. Soc. 9:201-215. http://dx.doi.org/10.2307/1467584.
66. Boulton AJ, Findlay S, Marmonier P, Stanley EH, Valett HM. 1998. The functional significance of the hyporheic zone in streams and rivers. Annu. Rev. Ecol. Sys. 29:59-81. http://dx.doi.org/10.1146/annurev.ecolsys.29.1.59.
67. Mermillod-Blondin F, Creuzé des Chatelliers M, Marmonier P, Dole-Olivier M-J. 2000. Distribution of solutes, microbes and invertebrates in river sediments along a riffle-pool-riffle sequence. Freshw. Biol. 44:255-269. http://dx.doi.org/10.1046/j.1365-2427.2000.00562.x.
68. Marmonier P, Luczyszyn H, Creuzé des Châtelliers M, Landon N, Claret C, Dole-Olivier M-J. 2010. Hyporheic flowpaths and interstitial invertebrates associated with stable and eroded river sections: interactions between micro-and meso-scales. Fund. Appl. Limnol. 176:303-317. http://dx.doi.org/10.1127/1863-9135/2010/0176-0303.
69. Strayer DL, May SE, Nielsen P, Wollheim W, Hausam S. 1997. Oxygen, organic matter, and sediment granulometry as controls on hyporheic animal communities. Arch. Hydrobiol. 140:131-144.
70. Chergui H, Pattee E. 1988. The dynamics of Hyphomycetes on decaying leaves in the network of the River Rhône (France). Arch. Hydrobiol. 114: 3-20.
71. Pascoal C, Pinho M, Cássio F, Gomes P. 2003. Assessing structural and functional ecosystem condition using leaf breakdown: studies on a polluted river. Freshw. Biol. 48:2033-2044. http://dx.doi.org/10.1046/j.1365-2427.2003.01130.x.
72. Pascoal C, Cássio F. 2004. Contribution of fungi and bacteria to leaf litter decomposition in a polluted river. Appl. Environ. Microbiol. 70:5266-5273. http://dx.doi.org/10.1128/AEM.70.9.5266-5273.2004.
73. Webster J, Towfik FH. 1972. Sporulation of aquatic hyphomycetes in relation to aeration. Trans. Br. Mycol. Soc. 59:353-364. http://dx.doi.org/10.1016/S0007-1536(72)80117-7.
74. Webster J. 1975. Further studies of sporulation of aquatic hyphomycetes in relation to aeration. Trans. Br. Mycol. Soc. 64:119-127. http://dx.doi.org/10.1016/S0007-1536(75)80082-9.
75. Sanders PF, Webster J. 1980. Sporulation responses of some 'aquatic hyphomycetes' in flowing water. Trans. Br. Mycol. Soc. 74:601-605. http://dx.doi.org/10.1016/S0007-1536(80)80062-3.
76. Danger M, Cornut J, Elger A, Chauvet E. 2012. Effects of burial on leaf litter quality, microbial conditioning and palatability to three shredder taxa. Freshw. Biol. 57:1017-1030. http://dx.doi.org/10.1111/j.1365-2427.2012.02762.x.
77. Cornut J, Clivot H, Chauvet E, Elger A, Pagnout C, Guérold F. 2012. Effect of acidification on leaf litter decomposition in benthic and hyporheic zones of woodland streams. Water Res. 46:6430-6444. http://dx.doi.org/10.1016/j.watres.2012.09.023.