-
1
-
-
14644435825
-
Intrinsically unstructured proteins and their functions
-
Dyson HJ, Wright PE (2005) Intrinsically unstructured proteins and their functions. Nat Rev Mol Cell Biol 6(3):197-208.
-
(2005)
Nat Rev Mol Cell Biol
, vol.6
, Issue.3
, pp. 197-208
-
-
Dyson, H.J.1
Wright, P.E.2
-
2
-
-
57049095821
-
Function and structure of inherently disordered proteins
-
Dunker AK, Silman I, Uversky VN, Sussman JL (2008) Function and structure of inherently disordered proteins. Curr Opin Struct Biol 18(6):756-764.
-
(2008)
Curr Opin Struct Biol
, vol.18
, Issue.6
, pp. 756-764
-
-
Dunker, A.K.1
Silman, I.2
Uversky, V.N.3
Sussman, J.L.4
-
3
-
-
84879177976
-
Describing intrinsically disordered proteins at atomic resolution by NMR
-
Jensen MR, Ruigrok RW, Blackledge M (2013) Describing intrinsically disordered proteins at atomic resolution by NMR. Curr Opin Struct Biol 23(3):426-435.
-
(2013)
Curr Opin Struct Biol
, vol.23
, Issue.3
, pp. 426-435
-
-
Jensen, M.R.1
Ruigrok, R.W.2
Blackledge, M.3
-
5
-
-
77957037991
-
Single-molecule fluorescence studies of intrinsically disordered proteins
-
Ferreon AC, Moran CR, Gambin Y, Deniz AA (2010) Single-molecule fluorescence studies of intrinsically disordered proteins. Methods Enzymol 472:179-204.
-
(2010)
Methods Enzymol
, vol.472
, pp. 179-204
-
-
Ferreon, A.C.1
Moran, C.R.2
Gambin, Y.3
Deniz, A.A.4
-
6
-
-
84865333057
-
Application of confocal singlemolecule FRET to intrinsically disordered proteins
-
Schuler B, Müller-Späth S, Soranno A, Nettels D (2012) Application of confocal singlemolecule FRET to intrinsically disordered proteins. Methods Mol Biol 896:21-45.
-
(2012)
Methods Mol Biol
, vol.896
, pp. 21-45
-
-
Schuler, B.1
Müller-Späth, S.2
Soranno, A.3
Nettels, D.4
-
7
-
-
84879327823
-
Modulation of allostery by protein intrinsic disorder
-
Ferreon AC, Ferreon JC, Wright PE, Deniz AA (2013) Modulation of allostery by protein intrinsic disorder. Nature 498(7454):390-394.
-
(2013)
Nature
, vol.498
, Issue.7454
, pp. 390-394
-
-
Ferreon, A.C.1
Ferreon, J.C.2
Wright, P.E.3
Deniz, A.A.4
-
8
-
-
84871427941
-
Describing sequence-ensemble relationships for intrinsically disordered proteins
-
Mao AH, Lyle N, Pappu RV (2013) Describing sequence-ensemble relationships for intrinsically disordered proteins. Biochem J 449(2):307-318.
-
(2013)
Biochem J
, vol.449
, Issue.2
, pp. 307-318
-
-
Mao, A.H.1
Lyle, N.2
Pappu, R.V.3
-
9
-
-
84885449854
-
A quantitative measure for protein conformational heterogeneity
-
Lyle N, Das RK, Pappu RV (2013) A quantitative measure for protein conformational heterogeneity. J Chem Phys 139(12):121907.
-
(2013)
J Chem Phys
, vol.139
, Issue.12
, pp. 121907
-
-
Lyle, N.1
Das, R.K.2
Pappu, R.V.3
-
10
-
-
79959903065
-
Protein structure along the order-disorder continuum
-
Fisher CK, Stultz CM (2011) Protein structure along the order-disorder continuum. J Am Chem Soc 133(26):10022-10025.
-
(2011)
J Am Chem Soc
, vol.133
, Issue.26
, pp. 10022-10025
-
-
Fisher, C.K.1
Stultz, C.M.2
-
11
-
-
77957092799
-
From the Cover: Charge interactions can dominate the dimensions of intrinsically disordered proteins
-
Müller-Späth S, et al. (2010) From the Cover: Charge interactions can dominate the dimensions of intrinsically disordered proteins. Proc Natl Acad Sci USA 107(33): 14609-14614.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, Issue.33
, pp. 14609-14614
-
-
Müller-Späth, S.1
-
12
-
-
72449139985
-
Intrinsically disordered proteins and their environment: Effects of strong denaturants, temperature, pH, counter ions, membranes, binding partners, osmolytes, and macromolecular crowding
-
Uversky VN (2009) Intrinsically disordered proteins and their environment: Effects of strong denaturants, temperature, pH, counter ions, membranes, binding partners, osmolytes, and macromolecular crowding. Protein J 28(7-8):305-325.
-
(2009)
Protein J
, vol.28
, Issue.7-8
, pp. 305-325
-
-
Uversky, V.N.1
-
13
-
-
41049090929
-
Macromolecular crowding and confinement: Biochemical, biophysical, and potential physiological consequences
-
Zhou HX, Rivas GN, Minton AP (2008) Macromolecular crowding and confinement: Biochemical, biophysical, and potential physiological consequences. Annu Rev Biophys 37:375-397.
-
(2008)
Annu Rev Biophys
, vol.37
, pp. 375-397
-
-
Zhou, H.X.1
Rivas, G.N.2
Minton, A.P.3
-
14
-
-
79551687316
-
Protein folding in the cell: Challenges and progress
-
Gershenson A, Gierasch LM (2011) Protein folding in the cell: Challenges and progress. Curr Opin Struct Biol 21(1):32-41.
-
(2011)
Curr Opin Struct Biol
, vol.21
, Issue.1
, pp. 32-41
-
-
Gershenson, A.1
Gierasch, L.M.2
-
15
-
-
0036792049
-
FlgM gains structure in living cells
-
DedmonMM, Patel CN, Young GB, Pielak GJ (2002) FlgM gains structure in living cells. Proc Natl Acad Sci USA 99(20):12681-12684.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, Issue.20
, pp. 12681-12684
-
-
Dedmon, M.M.1
Patel, C.N.2
Young, G.B.3
Pielak, G.J.4
-
16
-
-
29544433937
-
Macromolecular crowding in the Escherichia coli periplasm maintains alpha-synuclein disorder
-
McNulty BC, Young GB, Pielak GJ (2006) Macromolecular crowding in the Escherichia coli periplasm maintains alpha-synuclein disorder. J Mol Biol 355(5):893-897.
-
(2006)
J Mol Biol
, vol.355
, Issue.5
, pp. 893-897
-
-
McNulty, B.C.1
Young, G.B.2
Pielak, G.J.3
-
17
-
-
4544252011
-
The effect of macromolecular crowding on protein aggregation and amyloid fibril formation
-
Munishkina LA, Cooper EM, Uversky VN, Fink AL (2004) The effect of macromolecular crowding on protein aggregation and amyloid fibril formation. J Mol Recognit 17(5): 456-464.
-
(2004)
J Mol Recognit
, vol.17
, Issue.5
, pp. 456-464
-
-
Munishkina, L.A.1
Cooper, E.M.2
Uversky, V.N.3
Fink, A.L.4
-
18
-
-
79959807835
-
Protein disorder prevails under crowded conditions
-
Szasz CS, et al. (2011) Protein disorder prevails under crowded conditions. Biochemistry 50(26):5834-5844.
-
(2011)
Biochemistry
, vol.50
, Issue.26
, pp. 5834-5844
-
-
Szasz, C.S.1
-
19
-
-
77955044557
-
Macromolecular crowding remodels the energy landscape of a protein by favoring a more compact unfolded state
-
Hong JA, Gierasch LM (2010) Macromolecular crowding remodels the energy landscape of a protein by favoring a more compact unfolded state. J Am Chem Soc 132(30):10445-10452.
-
(2010)
J Am Chem Soc
, vol.132
, Issue.30
, pp. 10445-10452
-
-
Hong, J.A.1
Gierasch, L.M.2
-
20
-
-
84873326077
-
Direct observation of protein unfolded state compaction in the presence of macromolecular crowding
-
Mikaelsson T, Adén J, Johansson LBA, Wittung-Stafshede P (2013) Direct observation of protein unfolded state compaction in the presence of macromolecular crowding. Biophys J 104(3):694-704.
-
(2013)
Biophys J
, vol.104
, Issue.3
, pp. 694-704
-
-
Mikaelsson, T.1
Adén, J.2
Lba, J.3
Wittung-Stafshede, P.4
-
21
-
-
79951841821
-
Effects of macromolecular crowding on an intrinsically disordered protein characterized by small-angle neutron scattering with contrast matching
-
Johansen D, Jeffries CM, Hammouda B, Trewhella J, Goldenberg DP (2011) Effects of macromolecular crowding on an intrinsically disordered protein characterized by small-angle neutron scattering with contrast matching. Biophys J 100(4):1120-1128.
-
(2011)
Biophys J
, vol.100
, Issue.4
, pp. 1120-1128
-
-
Johansen, D.1
Jeffries, C.M.2
Hammouda, B.3
Trewhella, J.4
Goldenberg, D.P.5
-
22
-
-
84860863700
-
Cell-free formation of RNA granules: Bound RNAs identify features and components of cellular assemblies
-
Han TW, et al. (2012) Cell-free formation of RNA granules: Bound RNAs identify features and components of cellular assemblies. Cell 149(4):768-779.
-
(2012)
Cell
, vol.149
, Issue.4
, pp. 768-779
-
-
Han, T.W.1
-
23
-
-
84862776582
-
Phase transitions in the assembly of multivalent signalling proteins
-
Li PL, et al. (2012) Phase transitions in the assembly of multivalent signalling proteins. Nature 483(7389):336-340.
-
(2012)
Nature
, vol.483
, Issue.7389
, pp. 336-340
-
-
Li, P.L.1
-
24
-
-
79955832506
-
Soft active aggregates: Mechanics, dynamics and self-assembly of liquid-like intracellular protein bodies
-
Brangwynne CP (2011) Soft active aggregates: Mechanics, dynamics and self-assembly of liquid-like intracellular protein bodies. Soft Matter 7(7):3052-3059.
-
(2011)
Soft Matter
, vol.7
, Issue.7
, pp. 3052-3059
-
-
Brangwynne, C.P.1
-
25
-
-
0034695924
-
The yeast nuclear pore complex: Composition, architecture, and transport mechanism
-
Rout MP, et al. (2000) The yeast nuclear pore complex: Composition, architecture, and transport mechanism. J Cell Biol 148(4):635-651.
-
(2000)
J Cell Biol
, vol.148
, Issue.4
, pp. 635-651
-
-
Rout, M.P.1
-
26
-
-
77951298407
-
Models of macromolecular crowding effects and the need for quantitative comparisons with experiment
-
Elcock AH (2010) Models of macromolecular crowding effects and the need for quantitative comparisons with experiment. Curr Opin Struct Biol 20(2):196-206.
-
(2010)
Curr Opin Struct Biol
, vol.20
, Issue.2
, pp. 196-206
-
-
Elcock, A.H.1
-
27
-
-
84867048390
-
Polymer scaling laws of unfolded and intrinsically disordered proteins quantified with single-molecule spectroscopy
-
Hofmann H, et al. (2012) Polymer scaling laws of unfolded and intrinsically disordered proteins quantified with single-molecule spectroscopy. Proc Natl Acad Sci USA 109(40): 16155-16160.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, Issue.40
, pp. 16155-16160
-
-
Hofmann, H.1
-
28
-
-
84862076708
-
Quantifying internal friction in unfolded and intrinsically disordered proteins with single-molecule spectroscopy
-
Soranno A, et al. (2012) Quantifying internal friction in unfolded and intrinsically disordered proteins with single-molecule spectroscopy. Proc Natl Acad Sci USA 109(44): 17800-17806.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, Issue.44
, pp. 17800-17806
-
-
Soranno, A.1
-
29
-
-
0026240517
-
Asymptotic-behavior and long-range interactions in aqueous-solutions of poly(ethylene oxide)
-
Devanand K, Selser JC (1991) Asymptotic-behavior and long-range interactions in aqueous-solutions of poly(ethylene oxide). Macromolecules 24(22):5943-5947.
-
(1991)
Macromolecules
, vol.24
, Issue.22
, pp. 5943-5947
-
-
Devanand, K.1
Selser, J.C.2
-
30
-
-
0026344818
-
Estimation of macromolecule concentrations and excluded volume effects for the cytoplasm of Escherichia coli
-
Zimmerman SB, Trach SO (1991) Estimation of macromolecule concentrations and excluded volume effects for the cytoplasm of Escherichia coli. J Mol Biol 222(3):599-620.
-
(1991)
J Mol Biol
, vol.222
, Issue.3
, pp. 599-620
-
-
Zimmerman, S.B.1
Trach, S.O.2
-
32
-
-
0034669882
-
Why are "natively unfolded" proteins unstructured under physiologic conditions?
-
Uversky VN, Gillespie JR, Fink AL (2000) Why are "natively unfolded" proteins unstructured under physiologic conditions? Proteins 41(3):415-427.
-
(2000)
Proteins
, vol.41
, Issue.3
, pp. 415-427
-
-
Uversky, V.N.1
Gillespie, J.R.2
Fink, A.L.3
-
33
-
-
77952335311
-
Net charge per residue modulates conformational ensembles of intrinsically disordered proteins
-
Mao AH, Crick SL, Vitalis A, Chicoine CL, Pappu RV (2010) Net charge per residue modulates conformational ensembles of intrinsically disordered proteins. Proc Natl Acad Sci USA 107(18):8183-8188.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, Issue.18
, pp. 8183-8188
-
-
Mao, A.H.1
Crick, S.L.2
Vitalis, A.3
Chicoine, C.L.4
Pappu, R.V.5
-
34
-
-
84882364963
-
Conformations of intrinsically disordered proteins are influenced by linear sequence distributions of oppositely charged residues
-
Das RK, Pappu RV (2013) Conformations of intrinsically disordered proteins are influenced by linear sequence distributions of oppositely charged residues. Proc Natl Acad Sci USA 110(33):13392-13397.
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, Issue.33
, pp. 13392-13397
-
-
Das, R.K.1
Pappu, R.V.2
-
35
-
-
67749142097
-
Protein folding, protein collapse, and Tanford's transfer model: Lessons from single-molecule FRET
-
Ziv G, Haran G (2009) Protein folding, protein collapse, and Tanford's transfer model: Lessons from single-molecule FRET. J Am Chem Soc 131(8):2942-2947.
-
(2009)
J Am Chem Soc
, vol.131
, Issue.8
, pp. 2942-2947
-
-
Ziv, G.1
Haran, G.2
-
36
-
-
16344389134
-
Molecular crowding enhances native state stability and refolding rates of globular proteins
-
Cheung MS, Klimov D, Thirumalai D (2005) Molecular crowding enhances native state stability and refolding rates of globular proteins. Proc Natl Acad Sci USA 102(13): 4753-4758.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, Issue.13
, pp. 4753-4758
-
-
Cheung, M.S.1
Klimov, D.2
Thirumalai, D.3
-
37
-
-
16344364032
-
Models for excluded volume interaction between an unfolded protein and rigid macromolecular cosolutes: Macromolecular crowding and protein stability revisited
-
Minton AP (2005) Models for excluded volume interaction between an unfolded protein and rigid macromolecular cosolutes: Macromolecular crowding and protein stability revisited. Biophys J 88(2):971-985.
-
(2005)
Biophys J
, vol.88
, Issue.2
, pp. 971-985
-
-
Minton, A.P.1
-
38
-
-
77049106311
-
Dependence of protein folding stability and dynamics on the density and composition of macromolecular crowders
-
Mittal J, Best RB (2010) Dependence of protein folding stability and dynamics on the density and composition of macromolecular crowders. Biophys J 98(2):315-320.
-
(2010)
Biophys J
, vol.98
, Issue.2
, pp. 315-320
-
-
Mittal, J.1
Best, R.B.2
-
39
-
-
0019621126
-
Conformations of polydisperse polymer-solutions - Bimodal distribution
-
Joanny JF, Grant P, Pincus P, Turkevich LA (1981) Conformations of polydisperse polymer-solutions - bimodal distribution. J Appl Phys 52(10):5943-5948.
-
(1981)
J Appl Phys
, vol.52
, Issue.10
, pp. 5943-5948
-
-
Joanny, J.F.1
Grant, P.2
Pincus, P.3
Turkevich, L.A.4
-
40
-
-
22944433429
-
Theory of polymer solutions at intermediate concentration
-
Edwards SF (1966) Theory of polymer solutions at intermediate concentration. Proc Phys Soc Lond 88(560P):265-280.
-
(1966)
Proc Phys Soc Lond
, vol.88
, Issue.560
, pp. 265-280
-
-
Edwards, S.F.1
-
42
-
-
33748454896
-
Toward an accurate theoretical framework for describing ensembles for proteins under strongly denaturing conditions
-
Tran HT, Pappu RV (2006) Toward an accurate theoretical framework for describing ensembles for proteins under strongly denaturing conditions. Biophys J 91(5):1868-1886.
-
(2006)
Biophys J
, vol.91
, Issue.5
, pp. 1868-1886
-
-
Tran, H.T.1
Pappu, R.V.2
-
43
-
-
0039997134
-
The renormalization-group and critical phenomena
-
Wilson KG (1983) The renormalization-group and critical phenomena. Rev Mod Phys 55(3):583-600.
-
(1983)
Rev Mod Phys
, vol.55
, Issue.3
, pp. 583-600
-
-
Wilson, K.G.1
-
44
-
-
0009231265
-
Interaction effects on the size of a polymer-chain in ternary solutions - A renormalization-group study
-
Schäfer L, Kappeler C (1993) Interaction effects on the size of a polymer-chain in ternary solutions - a renormalization-group study. J Chem Phys 99(8):6135-6154.
-
(1993)
J Chem Phys
, vol.99
, Issue.8
, pp. 6135-6154
-
-
Schäfer, L.1
Kappeler, C.2
-
45
-
-
0022691129
-
Chain dimension of a guest polymer in the semidilute solution of compatible and incompatible polymers
-
Nose T (1986) Chain dimension of a guest polymer in the semidilute solution of compatible and incompatible polymers. J Phys (Paris) 47(3):517-527.
-
(1986)
J Phys (Paris)
, vol.47
, Issue.3
, pp. 517-527
-
-
Nose, T.1
-
46
-
-
84872904773
-
Quantitative assessment of the relative contributions of steric repulsion and chemical interactions to macromolecular crowding
-
Minton AP (2013) Quantitative assessment of the relative contributions of steric repulsion and chemical interactions to macromolecular crowding. Biopolymers 99(4): 239-244.
-
(2013)
Biopolymers
, vol.99
, Issue.4
, pp. 239-244
-
-
Minton, A.P.1
-
47
-
-
84877014249
-
Soft interactions and crowding
-
Sarkar M, Li C, Pielak GJ (2013) Soft interactions and crowding. Biophys. Rev. 5(2): 187-194.
-
(2013)
Biophys. Rev
, vol.5
, Issue.2
, pp. 187-194
-
-
Sarkar, M.1
Li, C.2
Pielak, G.J.3
-
48
-
-
84877808384
-
Crowding induced entropy-enthalpy compensation in protein association equilibria
-
Kim YC, Mittal J (2013) Crowding induced entropy-enthalpy compensation in protein association equilibria. Phys Rev Lett 110(20):208102-1-208102-5.
-
(2013)
Phys Rev Lett
, vol.110
, Issue.20
, pp. 2081021-2081025
-
-
Kim, Y.C.1
Mittal, J.2
-
49
-
-
0034255123
-
Speeding molecular recognition by using the folding funnel: The fly-casting mechanism
-
Shoemaker BA, Portman JJ, Wolynes PG (2000) Speeding molecular recognition by using the folding funnel: The fly-casting mechanism. Proc Natl Acad Sci USA 97(16): 8868-8873.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, Issue.16
, pp. 8868-8873
-
-
Shoemaker, B.A.1
Portman, J.J.2
Wolynes, P.G.3
-
50
-
-
77649266958
-
Capillarity theory for the fly-casting mechanism
-
Trizac E, Levy Y, Wolynes PG (2010) Capillarity theory for the fly-casting mechanism. Proc Natl Acad Sci USA 107(7):2746-2750.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, Issue.7
, pp. 2746-2750
-
-
Trizac, E.1
Levy, Y.2
Wolynes, P.G.3
-
51
-
-
65249099497
-
Fundamental aspects of protein-protein association kinetics
-
Schreiber G, Haran G, Zhou HX (2009) Fundamental aspects of protein-protein association kinetics. Chem Rev 109(3):839-860.
-
(2009)
Chem Rev
, vol.109
, Issue.3
, pp. 839-860
-
-
Schreiber, G.1
Haran, G.2
Zhou, H.X.3
-
52
-
-
0034713257
-
Nuclear distribution of prothymosin alpha and parathymosin: Evidence that prothymosin alpha is associated with RNA synthesis processing and parathymosin with early DNA replication
-
Vareli K, Frangou-Lazaridis M, van der Kraan I, Tsolas O, van Driel R (2000) Nuclear distribution of prothymosin alpha and parathymosin: Evidence that prothymosin alpha is associated with RNA synthesis processing and parathymosin with early DNA replication. Exp Cell Res 257(1):152-161.
-
(2000)
Exp Cell Res
, vol.257
, Issue.1
, pp. 152-161
-
-
Vareli, K.1
Frangou-Lazaridis, M.2
Van Der Kraan, I.3
Tsolas, O.4
Van Driel, R.5
-
53
-
-
0033802916
-
Mobility within the nucleus and neighboring cytosol is a key feature of prothymosin-alpha
-
Enkemann SA, Ward RD, Berger SL (2000) Mobility within the nucleus and neighboring cytosol is a key feature of prothymosin-alpha. J Histochem Cytochem 48(10): 1341-1355.
-
(2000)
J Histochem Cytochem
, vol.48
, Issue.10
, pp. 1341-1355
-
-
Enkemann, S.A.1
Ward, R.D.2
Berger, S.L.3
-
54
-
-
84861112348
-
Rapid perturbation of free-energy landscapes: From in vitro to in vivo
-
Gelman H, Platkov M, Gruebele M (2012) Rapid perturbation of free-energy landscapes: From in vitro to in vivo. Chemistry 18(21):6420-6427.
-
(2012)
Chemistry
, vol.18
, Issue.21
, pp. 6420-6427
-
-
Gelman, H.1
Platkov, M.2
Gruebele, M.3
-
55
-
-
84857128232
-
Protein-binding dynamics imaged in a living cell
-
Phillip Y, Kiss V, Schreiber G (2012) Protein-binding dynamics imaged in a living cell. Proc Natl Acad Sci USA 109(5):1461-1466.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, Issue.5
, pp. 1461-1466
-
-
Phillip, Y.1
Kiss, V.2
Schreiber, G.3
-
56
-
-
77649270851
-
Detecting the conformation of individual proteins in live cells
-
Sakon JJ, Weninger KR (2010) Detecting the conformation of individual proteins in live cells. Nat Methods 7(3):203-205.
-
(2010)
Nat Methods
, vol.7
, Issue.3
, pp. 203-205
-
-
Sakon, J.J.1
Weninger, K.R.2
|