메뉴 건너뛰기




Volumn 8, Issue 1, 2014, Pages

A bioinformatics approach reveals novel interactions of the OVOL transcription factors in the regulation of epithelial - mesenchymal cell reprogramming and cancer progression

Author keywords

Metastasis; Migration; Signal transduction; Systems biology; Therapeutics; Transcription factors; Tumor progression

Indexed keywords

TRANSCRIPTION FACTOR;

EID: 84897459183     PISSN: None     EISSN: 17520509     Source Type: Journal    
DOI: 10.1186/1752-0509-8-29     Document Type: Article
Times cited : (10)

References (38)
  • 1
    • 82855177919 scopus 로고    scopus 로고
    • Transcription factor networks as targets for therapeutic intervention of cancer: the breast cancer paradigm
    • 3321817, 21912809
    • Karamouzis MV, Papavassiliou AG. Transcription factor networks as targets for therapeutic intervention of cancer: the breast cancer paradigm. Mol Med 2011, 17(11-12):1133-1136. 3321817, 21912809.
    • (2011) Mol Med , vol.17 , Issue.11-12 , pp. 1133-1136
    • Karamouzis, M.V.1    Papavassiliou, A.G.2
  • 2
    • 34848826864 scopus 로고    scopus 로고
    • Epithelial-mesenchymal and mesenchymal-epithelial transitions in carcinoma progression
    • 10.1002/jcp.21223, 17680632
    • Hugo H, Ackland ML, Blick T, Lawrence MG, Clements JA, Williams ED, Thompson EW. Epithelial-mesenchymal and mesenchymal-epithelial transitions in carcinoma progression. J Cell Physiol 2007, 213(2):374-383. 10.1002/jcp.21223, 17680632.
    • (2007) J Cell Physiol , vol.213 , Issue.2 , pp. 374-383
    • Hugo, H.1    Ackland, M.L.2    Blick, T.3    Lawrence, M.G.4    Clements, J.A.5    Williams, E.D.6    Thompson, E.W.7
  • 5
    • 63049119641 scopus 로고    scopus 로고
    • Identifying hypothetical genetic influences on complex disease phenotypes
    • Keller BJ, McEachin RC. Identifying hypothetical genetic influences on complex disease phenotypes. BMC Bioinforma 2009, 10(Suppl 2):S13.
    • (2009) BMC Bioinforma , vol.10 , Issue.SUPPL 2
    • Keller, B.J.1    McEachin, R.C.2
  • 6
    • 77949600614 scopus 로고    scopus 로고
    • Modeling gene-by-environment interaction in comorbid depression with alcohol use disorders via an integrated bioinformatics approach
    • 10.1186/1756-0381-1-2, 2547861, 18822146
    • McEachin RC, Keller BJ, Saunders EF, McInnis MG. Modeling gene-by-environment interaction in comorbid depression with alcohol use disorders via an integrated bioinformatics approach. BioData Min 2008, 1(1):2. 10.1186/1756-0381-1-2, 2547861, 18822146.
    • (2008) BioData Min , vol.1 , Issue.1 , pp. 2
    • McEachin, R.C.1    Keller, B.J.2    Saunders, E.F.3    McInnis, M.G.4
  • 9
    • 78349252734 scopus 로고    scopus 로고
    • A genetic network model of cellular responses to lithium treatment and cocaine abuse in bipolar disorder
    • 10.1186/1752-0509-4-158, 3212423, 21092101
    • McEachin RC, Chen H, Sartor MA, Saccone SF, Keller BJ, Prossin AR, Cavalcoli JD, McInnis MG. A genetic network model of cellular responses to lithium treatment and cocaine abuse in bipolar disorder. BMC Syst Biol 2010, 4:158. 10.1186/1752-0509-4-158, 3212423, 21092101.
    • (2010) BMC Syst Biol , vol.4 , pp. 158
    • McEachin, R.C.1    Chen, H.2    Sartor, M.A.3    Saccone, S.F.4    Keller, B.J.5    Prossin, A.R.6    Cavalcoli, J.D.7    McInnis, M.G.8
  • 11
    • 0032502689 scopus 로고    scopus 로고
    • Estrogen regulation of the apolipoprotein AI gene promoter through transcription cofactor sharing
    • 10.1074/jbc.273.15.9270, 9535920
    • Harnish DC, Evans MJ, Scicchitano MS, Bhat RA, Karathanasis SK. Estrogen regulation of the apolipoprotein AI gene promoter through transcription cofactor sharing. J Biol Chem 1998, 273(15):9270-9278. 10.1074/jbc.273.15.9270, 9535920.
    • (1998) J Biol Chem , vol.273 , Issue.15 , pp. 9270-9278
    • Harnish, D.C.1    Evans, M.J.2    Scicchitano, M.S.3    Bhat, R.A.4    Karathanasis, S.K.5
  • 12
    • 84856196317 scopus 로고    scopus 로고
    • Nucleotide allosteric regulation of the glutamate dehydrogenases of Teladorsagia circumcincta and Haemonchus contortus
    • 10.1016/j.cbpb.2011.11.014, 22155552
    • Umair S, Knight JS, Patchett ML, Bland RJ, Simpson HV. Nucleotide allosteric regulation of the glutamate dehydrogenases of Teladorsagia circumcincta and Haemonchus contortus. Comp Biochem Physiol B Biochem Mol Biol 2012, 161(3):255-260. 10.1016/j.cbpb.2011.11.014, 22155552.
    • (2012) Comp Biochem Physiol B Biochem Mol Biol , vol.161 , Issue.3 , pp. 255-260
    • Umair, S.1    Knight, J.S.2    Patchett, M.L.3    Bland, R.J.4    Simpson, H.V.5
  • 13
    • 0024248859 scopus 로고
    • Hormonal control of myosin heavy chain genes during development of skeletal muscles
    • Rubinstein NA, Lyons GE, Kelly AM. Hormonal control of myosin heavy chain genes during development of skeletal muscles. Ciba Found Symp 1988, 138:35-51.
    • (1988) Ciba Found Symp , vol.138 , pp. 35-51
    • Rubinstein, N.A.1    Lyons, G.E.2    Kelly, A.M.3
  • 15
    • 0033927616 scopus 로고    scopus 로고
    • Medical subject headings (MeSH)
    • 35238, 10928714
    • Lipscomb CE. Medical subject headings (MeSH). Bull Med Libr Assoc 2000, 88(3):265-266. 35238, 10928714.
    • (2000) Bull Med Libr Assoc , vol.88 , Issue.3 , pp. 265-266
    • Lipscomb, C.E.1
  • 16
    • 0034737325 scopus 로고    scopus 로고
    • Highly specific localization of promoter regions in large genomic sequences by PromoterInspector: a novel context analysis approach
    • 10.1006/jmbi.2000.3589, 10731414
    • Scherf M, Klingenhoff A, Werner T. Highly specific localization of promoter regions in large genomic sequences by PromoterInspector: a novel context analysis approach. J Mol Biol 2000, 297(3):599-606. 10.1006/jmbi.2000.3589, 10731414.
    • (2000) J Mol Biol , vol.297 , Issue.3 , pp. 599-606
    • Scherf, M.1    Klingenhoff, A.2    Werner, T.3
  • 17
    • 0028971143 scopus 로고
    • MatInd and MatInspector: new fast and versatile tools for detection of consensus matches in nucleotide sequence data
    • 10.1093/nar/23.23.4878, 307478, 8532532
    • Quandt K, Frech K, Karas H, Wingender E, Werner T. MatInd and MatInspector: new fast and versatile tools for detection of consensus matches in nucleotide sequence data. Nucleic Acids Res 1995, 23(23):4878-4884. 10.1093/nar/23.23.4878, 307478, 8532532.
    • (1995) Nucleic Acids Res , vol.23 , Issue.23 , pp. 4878-4884
    • Quandt, K.1    Frech, K.2    Karas, H.3    Wingender, E.4    Werner, T.5
  • 19
  • 20
    • 46049087782 scopus 로고    scopus 로고
    • The TRANSFAC project as an example of framework technology that supports the analysis of genomic regulation
    • 10.1093/bib/bbn016, 18436575
    • Wingender E. The TRANSFAC project as an example of framework technology that supports the analysis of genomic regulation. Brief Bioinform 2008, 9(4):326-332. 10.1093/bib/bbn016, 18436575.
    • (2008) Brief Bioinform , vol.9 , Issue.4 , pp. 326-332
    • Wingender, E.1
  • 21
    • 51449101008 scopus 로고    scopus 로고
    • Thermodynamic analysis of the heterodimerization of leucine zippers of Jun and Fos transcription factors
    • 10.1016/j.bbrc.2008.08.058, 18725194
    • Seldeen KL, McDonald CB, Deegan BJ, Farooq A. Thermodynamic analysis of the heterodimerization of leucine zippers of Jun and Fos transcription factors. Biochem Biophys Res Commun 2008, 375(4):634-638. 10.1016/j.bbrc.2008.08.058, 18725194.
    • (2008) Biochem Biophys Res Commun , vol.375 , Issue.4 , pp. 634-638
    • Seldeen, K.L.1    McDonald, C.B.2    Deegan, B.J.3    Farooq, A.4
  • 22
    • 0025878233 scopus 로고
    • Cross-family dimerization of transcription factors Fos/Jun and ATF/CREB alters DNA binding specificity
    • 10.1073/pnas.88.9.3720, 51524, 1827203
    • Hai T, Curran T. Cross-family dimerization of transcription factors Fos/Jun and ATF/CREB alters DNA binding specificity. Proc Natl Acad Sci USA 1991, 88(9):3720-3724. 10.1073/pnas.88.9.3720, 51524, 1827203.
    • (1991) Proc Natl Acad Sci USA , vol.88 , Issue.9 , pp. 3720-3724
    • Hai, T.1    Curran, T.2
  • 23
    • 84858720808 scopus 로고    scopus 로고
    • Dimer-specific regulatory mechanisms within the NF-kappaB family of transcription factors
    • 10.1111/j.1600-065X.2011.01091.x, 22435556
    • Smale ST. Dimer-specific regulatory mechanisms within the NF-kappaB family of transcription factors. Immunol Rev 2012, 246(1):193-204. 10.1111/j.1600-065X.2011.01091.x, 22435556.
    • (2012) Immunol Rev , vol.246 , Issue.1 , pp. 193-204
    • Smale, S.T.1
  • 24
    • 0036290398 scopus 로고    scopus 로고
    • The basic helix-loop-helix domain of the E47 transcription factor requires other protein regions for full DNA binding activity
    • 10.1006/bbrc.2002.6375, 11820794
    • Lu J, Sloan SR. The basic helix-loop-helix domain of the E47 transcription factor requires other protein regions for full DNA binding activity. Biochem Biophys Res Commun 2002, 290(5):1521-1528. 10.1006/bbrc.2002.6375, 11820794.
    • (2002) Biochem Biophys Res Commun , vol.290 , Issue.5 , pp. 1521-1528
    • Lu, J.1    Sloan, S.R.2
  • 26
    • 84861108403 scopus 로고    scopus 로고
    • The tipping point for combination therapy: cancer vaccines with radiation, chemotherapy, or targeted small molecule inhibitors
    • 10.1053/j.seminoncol.2012.02.006, 3356994, 22595055
    • Hodge JW, Ardiani A, Farsaci B, Kwilas AR, Gameiro SR. The tipping point for combination therapy: cancer vaccines with radiation, chemotherapy, or targeted small molecule inhibitors. Semin Oncol 2012, 39(3):323-339. 10.1053/j.seminoncol.2012.02.006, 3356994, 22595055.
    • (2012) Semin Oncol , vol.39 , Issue.3 , pp. 323-339
    • Hodge, J.W.1    Ardiani, A.2    Farsaci, B.3    Kwilas, A.R.4    Gameiro, S.R.5
  • 27
    • 84869869682 scopus 로고    scopus 로고
    • HDAC inhibitor-based therapies: can we interpret the code?
    • 10.1016/j.molonc.2012.09.003, 23141799
    • New M, Olzscha H, La Thangue NB. HDAC inhibitor-based therapies: can we interpret the code?. Mol Oncol 2012, 6(6):637-656. 10.1016/j.molonc.2012.09.003, 23141799.
    • (2012) Mol Oncol , vol.6 , Issue.6 , pp. 637-656
    • New, M.1    Olzscha, H.2    La Thangue, N.B.3
  • 29
    • 84867899520 scopus 로고    scopus 로고
    • Phase I trial of induction histone deacetylase and proteasome inhibition followed by surgery in non-small-cell lung cancer
    • 10.1097/JTO.0b013e318267928d, 3473142, 23059775
    • Jones DR, Moskaluk CA, Gillenwater HH, Petroni GR, Burks SG, Philips J, Rehm PK, Olazagasti J, Kozower BD, Bao Y. Phase I trial of induction histone deacetylase and proteasome inhibition followed by surgery in non-small-cell lung cancer. J Thorac Oncol 2012, 7(11):1683-1690. 10.1097/JTO.0b013e318267928d, 3473142, 23059775.
    • (2012) J Thorac Oncol , vol.7 , Issue.11 , pp. 1683-1690
    • Jones, D.R.1    Moskaluk, C.A.2    Gillenwater, H.H.3    Petroni, G.R.4    Burks, S.G.5    Philips, J.6    Rehm, P.K.7    Olazagasti, J.8    Kozower, B.D.9    Bao, Y.10
  • 31
    • 84869082464 scopus 로고    scopus 로고
    • Vorinostat and bortezomib synergistically cause ubiquitinated protein accumulation in prostate cancer cells
    • 10.1016/j.juro.2012.07.108, 23088964
    • Sato A, Asano T, Ito K, Asano T. Vorinostat and bortezomib synergistically cause ubiquitinated protein accumulation in prostate cancer cells. J Urol 2012, 188(6):2410-2418. 10.1016/j.juro.2012.07.108, 23088964.
    • (2012) J Urol , vol.188 , Issue.6 , pp. 2410-2418
    • Sato, A.1    Asano, T.2    Ito, K.3    Asano, T.4
  • 32
    • 77956025843 scopus 로고    scopus 로고
    • ChIP-Seq using high-throughput DNA sequencing for genome-wide identification of transcription factor binding sites
    • Lefrancois P, Zheng W, Snyder M. ChIP-Seq using high-throughput DNA sequencing for genome-wide identification of transcription factor binding sites. Methods Enzymol 2010, 470:77-104.
    • (2010) Methods Enzymol , vol.470 , pp. 77-104
    • Lefrancois, P.1    Zheng, W.2    Snyder, M.3
  • 33
    • 84876566914 scopus 로고    scopus 로고
    • ChIPBase: a database for decoding the transcriptional regulation of long non-coding RNA and microRNA genes from ChIP-Seq data
    • Database issue, 3531181, 23161675
    • Yang JH, Li JH, Jiang S, Zhou H, Qu LH. ChIPBase: a database for decoding the transcriptional regulation of long non-coding RNA and microRNA genes from ChIP-Seq data. Nucleic Acids Res 2013, 41(Database issue):D177-D187. 3531181, 23161675.
    • (2013) Nucleic Acids Res , vol.41
    • Yang, J.H.1    Li, J.H.2    Jiang, S.3    Zhou, H.4    Qu, L.H.5
  • 34
    • 79959656490 scopus 로고    scopus 로고
    • Prdm14 initiates lymphoblastic leukemia after expanding a population of cells resembling common lymphoid progenitors
    • 10.1038/onc.2011.12, 3121925, 21339739
    • Dettman EJ, Simko SJ, Ayanga B, Carofino BL, Margolin JF, Morse HC, Justice MJ. Prdm14 initiates lymphoblastic leukemia after expanding a population of cells resembling common lymphoid progenitors. Oncogene 2011, 30(25):2859-2873. 10.1038/onc.2011.12, 3121925, 21339739.
    • (2011) Oncogene , vol.30 , Issue.25 , pp. 2859-2873
    • Dettman, E.J.1    Simko, S.J.2    Ayanga, B.3    Carofino, B.L.4    Margolin, J.F.5    Morse, H.C.6    Justice, M.J.7
  • 35
    • 77956534980 scopus 로고    scopus 로고
    • Expression of Slug is regulated by c-Myb and is required for invasion and bone marrow homing of cancer cells of different origin
    • 10.1074/jbc.M109.089045, 2937976, 20622260
    • Tanno B, Sesti F, Cesi V, Bossi G, Ferrari-Amorotti G, Bussolari R, Tirindelli D, Calabretta B, Raschella G. Expression of Slug is regulated by c-Myb and is required for invasion and bone marrow homing of cancer cells of different origin. J Biol Chem 2010, 285(38):29434-29445. 10.1074/jbc.M109.089045, 2937976, 20622260.
    • (2010) J Biol Chem , vol.285 , Issue.38 , pp. 29434-29445
    • Tanno, B.1    Sesti, F.2    Cesi, V.3    Bossi, G.4    Ferrari-Amorotti, G.5    Bussolari, R.6    Tirindelli, D.7    Calabretta, B.8    Raschella, G.9
  • 36
    • 84873562335 scopus 로고    scopus 로고
    • The role of EMT modulators in hematopoiesis and leukemic transformation
    • Belgium: Ghent University, Lawrie CH, InTech
    • Goosens S, Jody H. The role of EMT modulators in hematopoiesis and leukemic transformation. Hematology - Science and Practice 2012, 101-120. Belgium: Ghent University, Lawrie CH, InTech.
    • (2012) Hematology - Science and Practice , pp. 101-120
    • Goosens, S.1    Jody, H.2
  • 37
    • 65449136284 scopus 로고    scopus 로고
    • TopHat: discovering splice junctions with RNA-Seq
    • 10.1093/bioinformatics/btp120, 2672628, 19289445
    • Trapnell C, Pachter L, Salzberg SL. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 2009, 25(9):1105-1111. 10.1093/bioinformatics/btp120, 2672628, 19289445.
    • (2009) Bioinformatics , vol.25 , Issue.9 , pp. 1105-1111
    • Trapnell, C.1    Pachter, L.2    Salzberg, S.L.3
  • 38
    • 84859885816 scopus 로고    scopus 로고
    • Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
    • 10.1038/nprot.2012.016, 3334321, 22383036
    • Trapnell C, Roberts A, Goff L, Pertea G, Kim D, Kelley DR, Pimentel H, Salzberg SL, Rinn JL, Pachter L. Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nat Protoc 2012, 7(3):562-578. 10.1038/nprot.2012.016, 3334321, 22383036.
    • (2012) Nat Protoc , vol.7 , Issue.3 , pp. 562-578
    • Trapnell, C.1    Roberts, A.2    Goff, L.3    Pertea, G.4    Kim, D.5    Kelley, D.R.6    Pimentel, H.7    Salzberg, S.L.8    Rinn, J.L.9    Pachter, L.10


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.