Evaluation of a short, on-plate formic acid extraction method for matrix-assisted laser desorption ionization-time of flight mass spectrometry-based identification of clinically relevant yeast isolates

Journal of Clinical Microbiology

Volumn 52, Issue 4, 2014, Pages 1253-1255

  Gorton, Rebecca L ^a,b   Seaton, Shila ^c   Ramnarain, Purnima ^a   McHugh, Timothy D ^b   Kibbler, Christopher C ^a,b  

^a ROYAL FREE HOSPITAL   (United Kingdom)

^b UNIVERSITY COLLEGE LONDON   (United Kingdom)

^c PUBLIC HEALTH ENGLAND   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

FORMIC ACID; INTERNAL TRANSCRIBED SPACER; RIBOSOME RNA; FORMIC ACID DERIVATIVE;

ARTICLE; CANDIDA ALBICANS; CANDIDA PARAPSILOSIS; CYBERLINDNERA FABIANII; CYBERLINDNERA JADINII; DEBARYOMYCES NEPALENSIS; EXTRACTION; FUNGUS IDENTIFICATION; FUNGUS ISOLATION; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; MEYEROZYMA CARIBBICA; MOLECULAR BIOLOGY; NONHUMAN; PICHIA GUILLIERMONDII; PRIORITY JOURNAL; RARE SPECIES; RNA SEQUENCE; SCORING SYSTEM; SEQUENCE ANALYSIS; YEAST; CHEMISTRY; CLASSIFICATION; EVALUATION STUDY; HUMAN; ISOLATION AND PURIFICATION; LABORATORY DIAGNOSIS; MASS SPECTROMETRY; MYCOSES; PROCEDURES; SENSITIVITY AND SPECIFICITY;

FORMATES; HUMANS; MYCOSES; SENSITIVITY AND SPECIFICITY; SPECIMEN HANDLING; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; YEASTS;

EID: 84897125303     PISSN: 00951137     EISSN: 1098660X     Source Type: Journal    
DOI: 10.1128/JCM.03489-13     Document Type: Article

References (15)

1. Bader O, Weig M, Taverne-Ghadwal L, Lugert R, Gross U, Kuhns M. 2011. Improved clinical laboratory identification of human pathogenic yeasts by matrix-assisted laser desorption ionization time-of-flight mass spectrometry. Clin. Microbiol. Infect. 17:1359-1365. http://dx.doi.org/10.1111/j.1469-0691. 2010.03398.x.
2. Marklein G, Josten M, Klanke U, Muller E, Horre R, Maier T, Wenzel T, Kostrzewa M, Bierbaum G, Hoerauf A, Sahl HG. 2009. Matrixassisted laser desorption ionization-time of flight mass spectrometry for fast and reliable identification of clinical yeast isolates. J. Clin. Microbiol. 47:2912-2917. http://dx.doi.org/10.1128/JCM.00389-09.
3. Rosenvinge FS, Dzajic E, Knudsen E, Malig S, Andersen LB, Lovig A, Arendrup MC, Jensen TG, Gahrn-Hansen B, Kemp M. 2013. Performance of matrix-assisted laser desorption-time of flight mass spectrometry for identification of clinical yeast isolates. Mycoses 56:229-235. http://dx.doi.org/10.1111/myc.12000.
4. Sendid B, Ducoroy P, Francois N, Lucchi G, Spinali S, Vagner O, Damiens S, Bonnin A, Poulain D, Dalle F. 2013. Evaluation of MALDITOF mass spectrometry for the identification of medically-important yeasts in the clinical laboratories of Dijon and Lille hospitals. Med. Mycol. 51:25-32. http://dx.doi.org/10.3109/13693786.2012.693631.
5. Mancini N, De Carolis E, Infurnari L, Vella A, Clementi N, Vaccaro L, Ruggeri A, Posteraro B, Burioni R, Clementi M, Sanguinetti M. 2013. Comparative evaluation of the Bruker Biotyper and Vitek MS matrixassisted laser desorption ionization-time of flight (MALDI-TOF) mass spectrometry systems for identification of yeasts of medical importance. J. Clin. Microbiol. 51:2453-2457. http://dx.doi.org/10.1128/JCM.00841-13.
6. White TJ, Bruns T, Lee S, Taylor J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics, p 315-322. In Innis MA, Gelfand DH, Sninsky JJ, White TJ (ed), PCR protocols - a guide to methods and applications. Academic Press, New York, NY.
7. Jenkins C, Ling CL, Ciesielczuk HL, Lockwood J, Hopkins S, McHugh TD, Gillespie SH, Kibbler CC. 2012. Detection and identification of bacteria in clinical samples by 16S rRNA gene sequencing: comparison of two different approaches in clinical practice. J. Med. Microbiol. 61(Pt 4):483-488. http://dx.doi.org/10.1099/jmm.0.030387-0.
8. Cassagne C, Cella AL, Suchon P, Normand AC, Ranque S, Piarroux R. 2013. Evaluation of four pretreatment procedures for MALDI-TOF MS yeast identification in the routine clinical laboratory. Med. Mycol. 51:371-377. http://dx.doi.org/10.3109/13693786.2012.720720.
9. Theel ES, Schmitt BH, Hall L, Cunningham SA, Walchak RC, Patel R, Wengenack NL. 2012. Formic acid-based direct, on-plate testing of yeast and Corynebacterium species by Bruker Biotyper matrix-assisted laser desorption ionization-time of flight mass spectrometry. J. Clin. Microbiol. 50:3093-3095. http://dx.doi.org/10.1128/JCM.01045-12.
10. Van Herendael BH, Bruynseels P, Bensaid M, Boekhout T, De Baere T, Surmont I, Mertens AH. 2012. Validation of a modified algorithm for the identification of yeast isolates using matrix-assisted laser desorption/ionisation time-of-flight mass spectrometry (MALDI-TOF MS). Eur. J. Clin. Microbiol. Infect. Dis. 31: 841- 848. http://dx.doi.org/10.1007/s10096- 011-1383-y.
11. Bader O. 2013. MALDI-TOF-MS-based species identification and typing approaches in medical mycology. Proteomics 13:788-799. http://dx.doi.org/10. 1002/pmic.201200468.
12. Posteraro B, De Carolis E, Vella A, Sanguinetti M. 2013. MALDI-TOF mass spectrometry in the clinical mycology laboratory: identification of fungi and beyond. Expert. Rev. Proteomics 10:151-164. http://dx.doi.org/10.1586/epr.13.8.
13. Iriart X, Lavergne RA, Fillaux J, Valentin A, Magnaval JF, Berry A, Cassaing S. 2012. Routine identification of medical fungi by the new Vitek MS matrix-assisted laser desorption ionization-time of flight system with a new time-effective strategy. J. Clin. Microbiol. 50:2107-2110. http://dx.doi.org/10. 1128/JCM.06713-11.
14. Dhiman N, Hall L, Wohlfiel SL, Buckwalter SP, Wengenack NL. 2011. Performance and cost analysis of matrix-assisted laser desorption ionizationtime of flight mass spectrometry for routine identification of yeast. J. Clin. Microbiol. 49:1614-1616. http://dx.doi.org/10.1128/JCM.02381-10.
15. Vervaeke S, Vandamme K, Boone E, De Laere E, Swinne D, Surmont I. 2008.Acase of Candida lambica fungemia misidentified as Candida krusei in an intravenous drug abuser. Med. Mycol. 46:853-856. http://dx.doi.org/10.1080/ 13693780802342552.