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Volumn 95, Issue PART 4, 2014, Pages 868-873

Recombination strategies and evolutionary dynamics of the Human enterovirus A global gene pool

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CLADISTICS; COXSACKIE VIRUS; ENTEROVIRUS; ENTEROVIRUS 71; GENE POOL; GENETIC RECOMBINATION; GENETIC STABILITY; HALF LIFE TIME; HUMAN ENTEROVIRUS A; MOLECULAR DYNAMICS; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SEROTYPE; VIRUS GENE; VIRUS GENOME; VIRUS RECOMBINANT; VIRUS STRAIN;

EID: 84897099036     PISSN: 00221317     EISSN: 14652099     Source Type: Journal    
DOI: 10.1099/vir.0.060004-0     Document Type: Article
Times cited : (61)

References (35)
  • 3
    • 0032752851 scopus 로고    scopus 로고
    • Molecular epidemiology and evolution of enterovirus 71 strains isolated from 1970 to 1998
    • Brown, B. A., Oberste, M. S., Alexander, J. P., Jr, Kennett, M. L. & Pallansch, M. A. (1999). Molecular epidemiology and evolution of enterovirus 71 strains isolated from 1970 to 1998. J Virol 73, 9969-9975.
    • (1999) J Virol , vol.73 , pp. 9969-9975
    • Brown, B.A.1    Oberste, M.S.2    Alexander Jr., J.P.3    Kennett, M.L.4    Pallansch, M.A.5
  • 4
    • 0043210409 scopus 로고    scopus 로고
    • Complete genomic sequencing shows that polioviruses and members of human enterovirus species C are closely related in the noncapsid coding region
    • Brown, B., Oberste, M. S., Maher, K. & Pallansch, M. A. (2003). Complete genomic sequencing shows that polioviruses and members of human enterovirus species C are closely related in the noncapsid coding region. J Virol 77, 8973-8984.
    • (2003) J Virol , vol.77 , pp. 8973-8984
    • Brown, B.1    Oberste, M.S.2    Maher, K.3    Pallansch, M.A.4
  • 6
    • 38649110663 scopus 로고    scopus 로고
    • BEAST: Bayesian evolutionary analysis by sampling trees
    • Drummond, A. J. & Rambaut, A. (2007). BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol 7, 214.
    • (2007) BMC Evol Biol , vol.7 , pp. 214
    • Drummond, A.J.1    Rambaut, A.2
  • 7
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall, T. A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41, 95-98.
    • (1999) Nucleic Acids Symp Ser , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 8
    • 33751253784 scopus 로고    scopus 로고
    • Recombination patterns in aphthoviruses mirror those found in other picornaviruses
    • Heath, L., van der Walt, E., Varsani, A. & Martin, D. P. (2006). Recombination patterns in aphthoviruses mirror those found in other picornaviruses. J Virol 80, 11827-11832.
    • (2006) J Virol , vol.80 , pp. 11827-11832
    • Heath, L.1    van der Walt, E.2    Varsani, A.3    Martin, D.P.4
  • 9
    • 38649097184 scopus 로고    scopus 로고
    • Appearance of intratypic recombination of enterovirus 71 in Taiwan from 2002 to 2005
    • Authors other
    • Huang, S. C., Hsu, Y. W., Wang, H. C., Huang, S. W., Kiang, D., Tsai, H. P., Wang, S. M., Liu, C. C., Lin, K. H. & other authors (2008). Appearance of intratypic recombination of enterovirus 71 in Taiwan from 2002 to 2005. Virus Res 131, 250-259.
    • (2008) Virus Res , vol.131 , pp. 250-259
    • Huang, S.C.1    Hsu, Y.W.2    Wang, H.C.3    Huang, S.W.4    Kiang, D.5    Tsai, H.P.6    Wang, S.M.7    Liu, C.C.8    Lin, K.H.9
  • 12
    • 33748745563 scopus 로고    scopus 로고
    • Enterovirus surveillance United States, 1970-2005
    • Centers for Disease Control and Prevention
    • Khetsuriani, N., Lamonte-Fowlkes, A., Oberst, S., Pallansch, M. A. & Centers for Disease Control and Prevention (2006). Enterovirus surveillance United States, 1970-2005. MMWR Surveill Summ 55, 1-20.
    • (2006) MMWR Surveill Summ , vol.55 , pp. 1-20
    • Khetsuriani, N.1    Lamonte-Fowlkes, A.2    Oberst, S.3    Pallansch, M.A.4
  • 13
    • 77957916790 scopus 로고    scopus 로고
    • Direct interaction between two viral proteins, the nonstructural protein 2C and the capsid protein VP3, is required for enterovirus morphogenesis
    • Liu, Y., Wang, C., Mueller, S., Paul, A. V., Wimmer, E. & Jiang, P. (2010). Direct interaction between two viral proteins, the nonstructural protein 2C and the capsid protein VP3, is required for enterovirus morphogenesis. PLoS Pathog 6, e1001066.
    • (2010) PLoS Pathog , vol.6
    • Liu, Y.1    Wang, C.2    Mueller, S.3    Paul, A.V.4    Wimmer, E.5    Jiang, P.6
  • 14
    • 18744408450 scopus 로고    scopus 로고
    • Role of recombination in evolution of enteroviruses
    • Lukashev, A. N. (2005). Role of recombination in evolution of enteroviruses. Rev Med Virol 15, 157-167.
    • (2005) Rev Med Virol , vol.15 , pp. 157-167
    • Lukashev, A.N.1
  • 15
    • 77956624160 scopus 로고    scopus 로고
    • Recombination among picornaviruses
    • Lukashev, A. N. (2010). Recombination among picornaviruses. Rev Med Virol 20, 327-337.
    • (2010) Rev Med Virol , vol.20 , pp. 327-337
    • Lukashev, A.N.1
  • 17
    • 28044464255 scopus 로고    scopus 로고
    • Recombination in circulating Human enterovirus B: Independent evolution of structural and nonstructural genome regions
    • Lukashev, A. N., Lashkevich, V. A., Ivanova, O. E., Koroleva, G. A., Hinkkanen, A. E. & Ilonen, J. (2005). Recombination in circulating Human enterovirus B: independent evolution of structural and nonstructural genome regions. J Gen Virol 86, 3281-3290.
    • (2005) J Gen Virol , vol.86 , pp. 3281-3290
    • Lukashev, A.N.1    Lashkevich, V.A.2    Ivanova, O.E.3    Koroleva, G.A.4    Hinkkanen, A.E.5    Ilonen, J.6
  • 18
    • 84859515780 scopus 로고    scopus 로고
    • Recent advances in the molecular epidemiology and control of human enterovirus 71 infection
    • McMinn, P. C. (2012). Recent advances in the molecular epidemiology and control of human enterovirus 71 infection. Curr Opin Virol 2, 199-205.
    • (2012) Curr Opin Virol , vol.2 , pp. 199-205
    • McMinn, P.C.1
  • 19
    • 77956019832 scopus 로고    scopus 로고
    • Evolutionary dynamics and temporal/geographical correlates of recombination in the human enterovirus echovirus types 9, 11, and 30
    • Authors other
    • McWilliam Leitch, E. C., Cabrerizo, M., Cardosa, J., Harvala, H., Ivanova, O. E., Kroes, A. C., Lukashev, A., Muir, P., Odoom, J. & other authors (2010). Evolutionary dynamics and temporal/geographical correlates of recombination in the human enterovirus echovirus types 9, 11, and 30. J Virol 84, 9292-9300.
    • (2010) J Virol , vol.84 , pp. 9292-9300
    • McWilliam, L.E.C.1    Cabrerizo, M.2    Cardosa, J.3    Harvala, H.4    Ivanova, O.E.5    Kroes, A.C.6    Lukashev, A.7    Muir, P.8    Odoom, J.9
  • 20
    • 84857817153 scopus 로고    scopus 로고
    • The association of recombination events in the founding and emergence of subgenogroup evolutionary lineages of human enterovirus 71
    • Authors other
    • McWilliam Leitch, E. C., Cabrerizo, M., Cardosa, J., Harvala, H., Ivanova, O. E., Koike, S., Kroes, A. C., Lukashev, A., Perera, D. & other authors (2012). The association of recombination events in the founding and emergence of subgenogroup evolutionary lineages of human enterovirus 71. J Virol 86, 2676-2685.
    • (2012) J Virol , vol.86 , pp. 2676-2685
    • McWilliam, L.E.C.1    Cabrerizo, M.2    Cardosa, J.3    Harvala, H.4    Ivanova, O.E.5    Koike, S.6    Kroes, A.C.7    Lukashev, A.8    Perera, D.9
  • 22
    • 84874324124 scopus 로고    scopus 로고
    • Cellular receptors for human enterovirus species A
    • Nishimura, Y. & Shimizu, H. (2012). Cellular receptors for human enterovirus species A. Front Microbiol 3, 105.
    • (2012) Front Microbiol , vol.3 , pp. 105
    • Nishimura, Y.1    Shimizu, H.2
  • 23
    • 2942666022 scopus 로고    scopus 로고
    • Complete genome sequences of all members of the species Human enterovirus A
    • Oberste, M. S., Penaranda, S., Maher, K. & Pallansch, M. A. (2004). Complete genome sequences of all members of the species Human enterovirus A. J Gen Virol 85, 1597-1607.
    • (2004) J Gen Virol , vol.85 , pp. 1597-1607
    • Oberste, M.S.1    Penaranda, S.2    Maher, K.3    Pallansch, M.A.4
  • 24
    • 13644268924 scopus 로고    scopus 로고
    • Enteroviruses 76, 89, 90 and 91 represent a novel group within the species Human enterovirus A
    • Oberste, M. S., Maher, K., Michele, S. M., Belliot, G., Uddin, M. & Pallansch, M. A. (2005). Enteroviruses 76, 89, 90 and 91 represent a novel group within the species Human enterovirus A. J Gen Virol 86, 445-451.
    • (2005) J Gen Virol , vol.86 , pp. 445-451
    • Oberste, M.S.1    Maher, K.2    Michele, S.M.3    Belliot, G.4    Uddin, M.5    Pallansch, M.A.6
  • 25
    • 34447577520 scopus 로고    scopus 로고
    • Enteroviruses: Polioviruses, coxsackieviruses, echoviruses, and newer enteroviruses
    • 5th edn, Edited by D. M. Knipe & P. M. Howley. Philadelphia: Lippincott-Raven
    • Pallansch, M. & Roos, R. (2007). Enteroviruses: polioviruses, coxsackieviruses, echoviruses, and newer enteroviruses. In Fields Virology, 5th edn, pp. 840-893. Edited by D. M. Knipe & P. M. Howley. Philadelphia: Lippincott-Raven.
    • (2007) Fields Virology , pp. 840-893
    • Pallansch, M.1    Roos, R.2
  • 26
    • 34547753377 scopus 로고    scopus 로고
    • Picornaviridae: The viruses and their replication
    • 5th edn, Edited by D. M. Knipe & P. M. Howley. Philadelphia: Lippincott-Raven
    • Racaniello, V. R. (2007). Picornaviridae: the viruses and their replication. In Fields Virology, 5th edn, pp. 796-838. Edited by D. M. Knipe & P. M. Howley. Philadelphia: Lippincott-Raven.
    • (2007) Fields Virology , pp. 796-838
    • Racaniello, V.R.1
  • 27
    • 28944450584 scopus 로고    scopus 로고
    • Choosing appropriate substitution models for the phylogenetic analysis of protein-coding sequences
    • Shapiro, B., Rambaut, A. & Drummond, A. J. (2006). Choosing appropriate substitution models for the phylogenetic analysis of protein-coding sequences. Mol Biol Evol 23, 7-9.
    • (2006) Mol Biol Evol , vol.23 , pp. 7-9
    • Shapiro, B.1    Rambaut, A.2    Drummond, A.J.3
  • 28
    • 33645992762 scopus 로고    scopus 로고
    • Frequency and dynamics of recombination within different species of human enteroviruses
    • Simmonds, P. & Welch, J. (2006). Frequency and dynamics of recombination within different species of human enteroviruses. J Virol 80, 483-493.
    • (2006) J Virol , vol.80 , pp. 483-493
    • Simmonds, P.1    Welch, J.2
  • 29
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. & Kumar, S. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28, 2731-2739.
    • (2011) Mol Biol Evol , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 30
    • 77949394259 scopus 로고    scopus 로고
    • Evolutionary genetics of human enterovirus 71: Origin, population dynamics, natural selection, and seasonal periodicity of the VP1 gene
    • Tee, K. K., Lam, T. T., Chan, Y. F., Bible, J. M., Kamarulzaman, A., Tong, C. Y., Takebe, Y. & Pybus, O. G. (2010). Evolutionary genetics of human enterovirus 71: origin, population dynamics, natural selection, and seasonal periodicity of the VP1 gene. J Virol 84, 3339-3350.
    • (2010) J Virol , vol.84 , pp. 3339-3350
    • Tee, K.K.1    Lam, T.T.2    Chan, Y.F.3    Bible, J.M.4    Kamarulzaman, A.5    Tong, C.Y.6    Takebe, Y.7    Pybus, O.G.8
  • 31
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 32
    • 79956323635 scopus 로고    scopus 로고
    • Detection of recombination breakpoints in the genomes of human enterovirus 71 strains isolated in the Netherlands in epidemic and non-epidemic years, 1963-2010
    • Van der Sanden, S., van Eek, J., Martin, D. P., Van der Avoort, H., Vennema, H. & Koopmans, M. (2011). Detection of recombination breakpoints in the genomes of human enterovirus 71 strains isolated in the Netherlands in epidemic and non-epidemic years, 1963-2010. Infect Genet Evol 11, 886-894.
    • (2011) Infect Genet Evol , vol.11 , pp. 886-894
    • Van der Sanden, S.1    van Eek, J.2    Martin, D.P.3    Van der Avoort, H.4    Vennema, H.5    Koopmans, M.6
  • 35
    • 33748784320 scopus 로고    scopus 로고
    • Phylogenetic evidence for intertypic recombination in the emergence of human enterovirus 71 subgenotypes
    • Yoke-Fun, C. & AbuBakar, S. (2006). Phylogenetic evidence for intertypic recombination in the emergence of human enterovirus 71 subgenotypes. BMC Microbiol 6, 74.
    • (2006) BMC Microbiol , vol.6 , pp. 74
    • Yoke-Fun, C.1    Abubakar, S.2


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