Cloning of seed dormancy genes (TaSdr) associated with tolerance to pre-harvest sprouting in common wheat and development of a functional marker

Theoretical and Applied Genetics

Volumn 127, Issue 4, 2014, Pages 855-866

  Zhang, Yingjun ^a,b   Miao, Xilei ^a   Xia, Xianchun ^a   He, Zhonghu ^a  

^a INSTITUTE OF PLANT PROTECTION   (China)

^b INSTITUTE OF CEREAL AND OIL CROPS   (China)

Author keywords

[No Author keywords available]

Indexed keywords

CLONING; CROPS; GENES; POPULATION STATISTICS;

ALLELIC VARIATION; ASSOCIATION MAPPING; COMPARATIVE GENOMICS; GERMINATION INDEX; NOVEL INFORMATION; PHENOTYPIC VARIANCE; SEQUENCE ANALYSIS; WHEAT (TRITICUM AESTIVUM L.);

PLANTS (BOTANY);

TRITICUM AESTIVUM;

ADAPTATION; ALLELE; ARTICLE; CHINA; CHROMOSOME MAP; DORMANCY; GENE FREQUENCY; GENETIC LINKAGE; GENETIC MARKER; GENETIC POLYMORPHISM; GENETICS; GENOTYPE; GEOGRAPHY; GERMINATION; MOLECULAR CLONING; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PLANT GENE; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY; WHEAT;

ADAPTATION, PHYSIOLOGICAL; ALLELES; BASE SEQUENCE; CHINA; CHROMOSOME MAPPING; CLONING, MOLECULAR; GENE FREQUENCY; GENES, PLANT; GENETIC LINKAGE; GENETIC MARKERS; GENOTYPE; GEOGRAPHY; GERMINATION; MOLECULAR SEQUENCE DATA; PHENOTYPE; PHYLOGENY; PLANT DORMANCY; POLYMORPHISM, GENETIC; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, NUCLEIC ACID; TRITICUM;

EID: 84897083731     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-014-2262-6     Document Type: Article

References (73)

1. Ashikawa I, Abe F, Nakamura S (2010) Ectopic expression of wheat and barley DOG1-like genes promotes seed dormancy in Arabidopsis. Plant Sci 179: 536-542.
2. Bagge M, Xia XC, Lübberstedt T (2007) Functional markers in wheat. Curr Opin Plant Biol 10: 211-216.
3. Bailey PC, McKibbin RS, Lenton JR, Holdsworth MJ, Flintham JE, Gale MD (1999) Genetic map locations for orthologous Vp1 genes in wheat and rice. Theor Appl Genet 98: 281-284.
4. Bentsink L, Jowett J, Hanhart CJ, Koornneef M (2006) Cloning of DOG1, a quantitative trait locus controlling seed dormancy in Arabidopsis. Proc Natl Acad Sci USA 103: 17042-17047.
5. Chang C, Feng JM, Si HQ, Yin B, Zhang HP, Ma CX (2010a) Validating a novel allele of viviparous-1 (Vp-1Bf) associated with high seed dormancy of Chinese wheat landrace, Wanxianbaimaizi. Mol Breeding 25: 517-525.
6. Chang C, Zhang HP, Feng JM, Yin B, Si HQ, Ma CX (2010b) Identifying alleles of Viviparous-1B associated with pre-harvest sprouting in micro-core collections of Chinese wheat germplasm. Mol Breeding 25: 481-490.
7. Chang C, Zhang HP, Zhao QX, Feng JM, Si HQ, Lu J, Ma CX (2011) Rich allelic variations of Viviparous-1A and their associations with seed dormancy/pre-harvest sprouting of common wheat. Euphytica 179: 343-353.
8. Chen CX, Cai SB, Bai GH (2008) A major QTL controlling seed dormancy and pre-harvest sprouting resistance on chromosome 4A in a Chinese wheat landrace. Mol Breeding 21: 351-358.
9. Chono M, Honda I, Shinoda S, Kushiro T, Kamiya Y, Nambara E, Kawakami N, Kaneko S, Watanabe Y (2006) Field studies on the regulation of abscisic acid content and germinability during grain development of barley: molecular and chemical analysis of pre-harvest sprouting. J Exp Bot 57: 2421-2434.
10. Derera NF, Bhatt GM, McMaster GJ (1977) On the problem of pre-harvest sprouting of wheat. Euphytica 26: 299-308.
11. Flintham JE (2000) Different genetic components control coat-imposed and embryo-imposed dormancy in wheat. Seed Sci Res 10: 43-50.
12. Groos C, Gay G, Perretant MR, Gervais L, Bernard M, Dedryver F, Charmet G (2002) Study of the relationship between pre-harvest sprouting and grain color by quantitative trait loci analysis in a white × red grain bread-wheat cross. Theor Appl Genet 104: 39-47.
13. Gubler F, Millar AA, Jacobsen JV (2005) Dormancy release, ABA and pre-harvest sprouting. Curr Opin Plant Biol 8: 183-187.
14. Hattori T, Vasil V, Rosenkrans L, Hannah LC, McCarty DR, Vasil IK (1992) The Viviparous-1 gene and abscisic acid activate the C1 regulatory gene for anthocyanin biosynthesis during seed maturation in maize. Gene Dev 6: 609-618.
15. Hattori T, Terada T, Hamasuna ST (1994) Sequence and functional analyses of the rice gene homologous to the maize Vp1. Plant Mol Biol 24: 805-810.
16. He XY, He ZH, Zhang LP, Sun DJ, Morris CF, Fuerst EP, Xia XC (2007) Allelic variation of polyphenol oxidase (PPO) genes located on chromosomes 2A and 2D and development of functional markers for the PPO genes in common wheat. Theor Appl Genet 115: 47-58.
17. He XY, Zhang YL, He ZH, Wu YP, Xiao YG, Ma CX, Xia CX (2008) Characterization of phytoene synthase 1 gene (Psy1) located on common wheat chromosome 7A and development of a functional marker. Theor Appl Genet 116: 213-221.
18. He XY, He ZH, Ma W, Appels R, Xia XC (2009) Allelic variants of phytoene synthase 1 (Psy1) genes in Chinese and CIMMYT wheat cultivars and development of functional markers for flour colour. Mol Breeding 23: 553-563.
19. Hickey LT, Dieters MJ, DeLacy IH, Christopher MJ, Kravchuk OY, Banks PM (2009) Screening for grain dormancy in segregating generations of dormant × non-dormant crosses in white-grained wheat (Triticum aestivum L.). Euphytica 172: 183-195.
20. Himi E, Noda K (2005) Red grain colour gene (R) of wheat is a Myb-type transcription factor. Euphytica 143: 239-242.
21. Himi E, Mares DJ, Yanagisawa A, Noda K (2002) Effect of grain colour gene (R) on grain dormancy and sensitivity of the embryo to abscisic acid (ABA) in wheat. J Exp Bot 53: 1569-1574.
22. Jaiswal V, Mir RR, Mohan A, Balyan HS, Gupta PK (2012) Association mapping for pre-harvest sprouting tolerance in common wheat (Triticum aestivum L.). Euphytica 188: 89-102.
23. Koornneef M, Hanhart CJ, Hilhorst HWM, Karssen CM (1989) In vivo inhibition of seed development and reserve protein accumulation in recombinants of abscisic acid biosynthesis and responsiveness mutants in Arabidopsis thaliana. Plant Physiol 90: 463-469.
24. Kosambi DD (1944) The estimation of map distances from recombination values. Annals of Eugenics 12: 172-175.
25. Kulwal PL, Singh R, Balyan HS, Gupta PK (2004) Genetic basis of pre-harvest sprouting tolerance using single-locus and two-locus QTL analyses in bread wheat. Funct Integr Genomics 4: 94-101.
26. Kulwal P, Ishikawa G, Benscher D, Feng ZY, Yu LX, Jadhav A, Mehetre S, Sorrells ME (2012) Association mapping for pre-harvest sprouting resistance in white winter wheat. Theor Appl Genet 125: 793-805.
27. Kurup S, Jones HD, Holdsworth MJ (2000) Interactions of the developmental regulator ABI3 with proteins identified from developing Arabidopsis seeds. Plant J 21: 143-155.
28. Kushiro T, Okamoto M, Nakabayashi K, Yamagishi K, Kitamura S, Asami T, Hirai N, Koshiba T, Kamiya Y, Nambara E (2004) The Arabidopsis cytochrome P450 CYP707A encodes ABA 8'-hydroxylases: key enzymes in ABA catabolism. EMBO J 23: 1647-1656.
29. Lagudah ES, Appels R, McNeil D (1991) The Nor-D3 locus of Triticum tauschii: natural variation and genetic linkage to markers in chromosome 5. Genome 34: 387-395.
30. Lan XJ, Wang JR, Wei YM, Chen GY, Jiang QT, Peng YY, Dai SF, Zheng YL (2012) Identification of seed dormancy on chromosome 2BS from wheat cv. Chinese Spring. Afr J Agric Res 7: 6191-6196.
31. Lee Y, Kende H (2001) Expression of beta-expansions is correlated with internodal elongation in deepwater rice. Plant Physiol 127: 645-654.
32. Li CD, Ni PX, Francki M, Hunter A, Zhang Y, Schibeci D, Li H, Tarr A, Wang J, Cakir M, Yu J, Bellgard M, Lance R, Appels R (2004) Genes controlling seed dormancy and pre-harvest sprouting in a rice-wheat-barley comparison. Funct Integr Genomics 4: 84-93.
33. Li HH, Ye GY, Wang JK (2007) A modified algorithm for the improvement of composite interval mapping. Genetics 175: 361-374.
34. Li HH, Ribaut JM, Li ZL, Wang JK (2008) Inclusive composite interval mapping (ICIM) for digenic epistasis of quantitative traits in biparental populations. Theor Appl Genet 116: 243-260.
35. Liu SB, Bai GH (2010) Dissection and fine mapping of a major QTL for preharvest sprouting resistance in white wheat Rio Blanco. Theor Appl Genet 121: 1395-1404.
36. Liu HY, Yu X, Cui DY, Sun MH, Sun WN, Tang ZC, Kwak SS, Su WA (2007a) The role of water channel proteins and nitric oxide signaling in rice seed germination. Cell Res 17: 638-649.
37. Liu YX, Koornneef M, Soppe WJJ (2007b) The absence of histone H2B monoubiquitination in the Arabidopsis hub1 (rdo4) mutant reveals a role for chromatin remodeling in seed dormancy. Plant Cell 19: 433-444.
38. Liu SB, Cai SB, Graybosch R, Chen CX, Bai GH (2008) Quantitative trait loci for resistance to pre-harvest sprouting in US hard white winter wheat Rio Blanco. Theor Appl Genet 117: 691-699.
39. Liu YN, He ZH, Appels R, Xia XC (2012) Functional markers in wheat: current status and future prospects. Theor Appl Genet 125: 1-10.
40. Liu SB, Sehgal SK, Li JR, Lin M, Trick HN, Yu JM, Gill BS, Bai GH (2013) Cloning and characterization of a critical regulator for pre-harvest sprouting in wheat. Genetics 195: 263-273.
41. Lohwasser U, Rehman Arif MA, Börner A (2013) Discovery of loci determining pre-harvest sprouting and dormancy in wheat and barley applying segregation and association mapping. Biol Plantarum 57: 663-674.
42. Ma DY, Yan J, He ZH, Wu L, Xia XC (2010) Characterization of a cell wall invertase gene TaCwi-A1 on common wheat chromosome 2A and development of functional markers. Mol Breeding 29: 43-52.
43. Mares D, Mrva K, Cheong J, Williams K, Watson B, Storlie E, Sutherland M, Zou Y (2005) A QTL located on chromosome 4A associated with dormancy in white- and red-grained wheats of diverse origin. Theor Appl Genet 111: 1357-1364.
44. McCarty DR, Hattori T, Carson CB, Vasil V, Lazar M, Vasil IK (1991) The Viviparous-1 developmental gene of maize encodes a novel transcriptional activator. Cell 66: 895-905.
45. McKibbin RS, Wilkinson MD, Bailey PC, Flintham JE, Andrew LM, Lazzeri PA, Gale MD, Lenton JR, Holdsworth MJ (2002) Transcripts of Vp-1 homeologues are misspliced in modern wheat and ancestral species. Proc Natl Acad Sci USA 99: 10203-10208.
46. Miao XL, Zhang YJ, Xia XC, He ZH, Zhang Y, Yan J, Chen XM (2013) Mapping quantitative trait loci for pre-harvest sprouting resistance in white-grained winter wheat line CA 0431. Crop Pasture Sci 64: 573-579.
47. Mohan A, Kulwal P, Singh R, Kumar V, Mir RR, Kumar J, Prasad M, Balyan HS, Gupta PK (2009) Genome-wide QTL analysis for pre-harvest sprouting tolerance in bread wheat. Euphytica 168: 319-329.
48. Munkvold JD, Tanaka J, Benscher D, Sorrells ME (2009) Mapping quantitative trait loci for preharvest sprouting resistance in white wheat. Theor Appl Genet 119: 1223-1235.
49. Nakamura S, Toyama T (2001) Isolation of a VP1 homologue from wheat and analysis of its expression in embryos of dormant and non-dormant cultivars. J Exp Bot 52: 875-876.
50. Nakamura S, Abe F, Kawahigashi H, Nakazono K, Tagiri A, Matsumoto T, Utsugi S, Ogawa T, Handa H, Ishida H, Mori M, Kawaura K, Ogihara Y, Miura H (2011) A wheat homolog of MOTHER OF FT AND TFL1 acts in the regulation of germination. Plant Cell 23: 3215-3229.
51. Oikawa T, Koshioka M, Kojima K, Yoshida H, Kawata M (2004) A role of OsGA20ox1, encoding an isoform of gibberellin 20-oxidase, for regulation of plant stature in rice. Plant Mol Biol 55: 687-700.
52. Osa M, Kato K, Mori M, Shindo C, Torada A, Miura H (2003) Mapping QTLs for seed dormancy and the Vp1 homologue on chromosome 3A in wheat. Theor Appl Genet 106: 1491-1496.
53. Parcy F, Valon C, Kohara A, Misera S, Giraudat J (1997) The ABSCISIC ACID-INSENSITIVE3, FUSCA3, and LEAFY COTYLEDON1 loci act in concert to control multiple aspects of Arabidopsis seed development. Plant Cell 9: 1265-1277.
54. Rasul G, Humphreys DG, Brûlé-Babel A, McCartney CA, Knox RE, DePauw RM, Somers DJ (2009) Mapping QTLs for pre-harvest sprouting traits in the spring wheat cross 'RL4452/AC Domain'. Euphytica 168: 363-378.
55. Rehman Arif MA, Neumann K, Nagel M, Kobiljski B, Lohwasser U, Börner A (2012) An association mapping analysis of dormancy and pre-harvest sprouting in wheat. Euphytica 188: 409-417.
56. Rikiishi K, Maekawa M (2010) Characterization of a novel wheat (Triticum aestivum L.) mutant with reduced seed dormancy. J Cereal Sci 51: 292-298.
57. Saito S, Hirai N, Matsumoto C, Ohigashi H, Ohta D, Sakata K, Mizutani M (2004) Arabidopsis CYP707As encode (+)-Abscisic Acid 8′-Hydroxylase, a key enzyme in the oxidative catabolism of abscisic acid. Plant Physiol 134: 1439-1449.
58. Singh R, Matus-Cádiz M, Båga M, Hucl P, Chibbar RN (2010) Identification of genomic regions associated with seed dormancy in white-grained wheat. Euphytica 174: 391-408.
59. Somers DJ, Isaac P, Edwards K (2004) A high-density microsatellite consensus map for bread wheat (Triticum aestivum L.). Theor Appl Genet 109: 1105-1114.
60. Somyong S (2010) Comparative genetic analysis and fine mapping of a major preharvest sprouting QTL interval in white winter wheat. http://hdl. handle. net/1813/17215.
61. Stone SL, Kwong LW, Yee KM, Pelletier J, Lepiniec L, Fischer RL, Goldberg RB, Harada JJ (2001) LEAFY COTYLEDON2 encodes a B3 domain transcription factor that induces embryo development. Proc Natl Acad Sci USA 98: 11806-11811.
62. Sugimoto K, Takeuchi Y, Ebana K, Miyao A, Hirochika H, Hara N, Ishiyama K, Kobayashi M, Ban Y, Hattori T, Yano M (2010) Molecular cloning of Sdr4, a regulator involved in seed dormancy and domestication of rice. Proc Natl Acad Sci USA 107: 5792-5797.
63. Sun DJ, He ZH, Xia XC, Zhang LP, Morris CF, Appels R, Ma WJ, Wang H (2005) A novel STS marker for polyphenol oxidase activity in bread wheat. Mol Breeding 16: 209-218.
64. Tan MK, Sharp PJ, Lu MQ, Howes N (2006) Genetics of grain dormancy in a white wheat. Aust J Agr Res 57: 1157-1165.
65. Walker-Simmons M (1988) Enhancement of ABA responsiveness in wheat embryos by high temperature. Plant Cell Environ 11: 769-775.
66. Warner RL, Kudrna DA, Spaeth SC, Jones SS (2000) Dormancy in white-grain mutants of Chinese Spring wheat (Triticum aestivum L.). Seed Sci Res 10: 51-60.
67. Xi WY, Liu C, Hou XL, Yu H (2010) MOTHER OF FT AND TFL1 regulates seed germination through a negative feedback loop modulating ABA signaling in Arabidopsis. Plant Cell 22: 1733-1748.
68. Xia LQ, Ganal MW, Shewry PR, He ZH, Yang Y, Röder MS (2008) Exploiting the diversity of Viviparous-1 gene associated with pre-harvest sprouting tolerance in European wheat varieties. Euphytica 159: 411-417.
69. Yang Y, Zhao XL, Xia LQ, Chen XM, Xia XC, Yu Z, He ZH, Röder M (2007) Development and validation of a Viviparous-1 STS marker for pre-harvest sprouting tolerance in Chinese wheats. Theor Appl Genet 115: 971-980.
70. Zhang HF, Zemetra RS, Liu CT (1989) Studies on preharvest sprouting resistance in winter wheat and its determination. Acta Agronomica Sinica 15: 116-122.
71. Zhang XQ, Li CD, Tay A, Lance R, Mares D, Cheong J, Cakir M, Ma JH, Appels R (2008) A new PCR-based marker on chromosome 4AL for resistance to pre-harvest sprouting in wheat (Triticum aestivum L.). Mol Breeding 22: 227-236.
72. Zhang CL, He XY, He ZH, Wang LH, Xia XC (2009) Cloning of TaCYP707A1 gene that encodes ABA 8′-Hydroxylase in common wheat (Triticum aestivum L.). Agric Sci China 8: 902-909.
73. Zheng J, Chen F, Wang Z, Cao H, Li X, Deng X, Soppe WJJ, Li Y, Liu Y (2012) A novel role for histone methyltransferase KYP/SUVH4 in the control of Arabidopsis primary seed dormancy. New Phytol 193: 605-616.