Identification of genomic regions associated with seed dormancy in white-grained wheat

Euphytica

Volumn 174, Issue 3, 2010, Pages 391-408

  Singh, Rajender ^a,b   Matus Cádiz, Maria ^a   Båga, Monica ^a   Hucl, Pierre ^a   Chibbar, Ravindra N ^a  

^a UNIVERSITY OF SASKATCHEWAN   (Canada)

^b ICAR INDIAN INSTITUTE OF WHEAT AND BARLEY RESEARCH   (India)

Author keywords

Pre harvest sprouting; Quantitative trait loci; Seed dormancy; White grained wheat (Triticum aestivum L.)

Indexed keywords

TRITICUM AESTIVUM;

EID: 77954216772     PISSN: 00142336     EISSN: 15735060     Source Type: Journal    
DOI: 10.1007/s10681-010-0137-8     Document Type: Article

References (49)

1. Akbari M, Wenzl P, Caig V, Carling J, Xia L, Yang S, Uszynski G, Mohler V, Lehmensiek A, Kuchel H, Hayden MJ, Howes N, Sharp P, Vaughn P, Rathmell B, Huttner E, Kilian A (2006) Diversity arrays technology (DArT) for high-throughput profiling of the hexaploid wheat genome. Theor Appl Genet 113: 1409-1420.
2. Anderson JA, Sorrells ME, Tanksley SD (1993) RFLP analysis of genomic regions associated with resistance to preharvest sprouting in wheat. Crop Sci 33: 453-459.
3. Båga M, Chodaparambil SV, Limin AE, Pecar M, Fowler DB, Chibbar RN (2007) Identification of quantitative trait loci and associated candidate genes for low-temperature tolerance in cold-hardy winter wheat. Funct Integr Genomics 7: 53-68.
4. Bailey PC, McKibbin RS, Lenton JR, Holdsworth MJ, Flintham JE, Gale MD (1999) Genetic map locations for orthologous Vp1 genes in wheat and rice. Theor Appl Genet 98: 281-284.
5. Bewley JD (1997) Seed germination and dormancy. Plant Cell 9: 1055-1066.
6. Doyle JJ, Doyle JL (1990) Isolation of plant DNA from fresh tissue. Focus 12: 13-15.
7. Eujayl I, Sorrells ME, Baum M, Wolters P, Powell W (2002) Isolation of EST-derived microsatellite markers for genotyping the A and B genomes of wheat. Theor Appl Genet 104: 399-407.
8. Faris JD, Laddomada B, Gill BS (1998) Molecular mapping of segregation distortion loci in Aegilops tauschii. Genetics 149: 319-327.
9. Flintham J, Adlam R, Bassoi M, Holdsworth M, Gale M (2002) Mapping genes for resistance to sprouting damage in wheat. Euphytica 126: 39-45.
10. Groos C, Gay G, Perretant MR, Gervais L, Bernard M, Dedryver F, Charmet G (2002) Study of the relationship between pre-harvest sprouting and grain color by quantitative trait loci analysis in a white × red grain bread-wheat cross. Theor Appl Genet 104: 39-47.
11. Himi E, Noda K (2005) Red grain colour gene (R) of wheat is a Myb-type transcription factor. Euphytica 143: 239-242.
12. Himi E, Mares DJ, Yanagisawa A, Noda K (2002) Effect of grain colour gene (R) on grain dormancy and sensitivity of the embryo to abscisic acid (ABA) in wheat. J Exp Bot 53: 1569-1574.
13. Holdsworth MJ, Bentsink L, Soppe WJJ (2008) Molecular networks regulating Arabidopsis seed maturation, after-ripening, dormancy and germination. New Phytol 179: 33-54.
14. Howell KA, Narsai R, Carroll A, Ivanova A, Lohse M, Usadel B, Millar AH, Whelan J (2009) Mapping metabolic and transcript temporal switches during germination in rice highlights specific transcription factors and the role of RNA instability in the germination process. Plant Physiol 149: 961-980.
15. Hucl P, Matus-Cádiz M, Hanson K, Perron C, Tyler R (2005) Development of hard white bread wheat with sprouting resistance. ADF project report (19990102). http://www. agriculture. gov. sk. ca/Projects. pp 67.
16. Kammholz SJ, Campbell AW, Sutherland MW, Hollamby GJ, Martin PJ, Eastwood RF, Barclay I, Wilson RE, Brennan PS, Sheppard JA (2001) Establishment and characterisation of wheat genetic mapping populations. Aust J Agric Res 52: 1079-1088.
17. Kato K, Nakamura W, Tabiki T, Miura H, Sawada S (2001) Detection of loci controlling seed dormancy on group 4 chromosomes of wheat and comparative mapping with rice and barley genomes. Theor Appl Genet 102: 980-985.
18. Knox RE, Clarke FR, Clarke JM, Fox SL (2005) Genetic analysis of pre-harvest sprouting in a durum wheat cross. Euphytica 143: 261-264.
19. Kulwal PL, Kumar N, Gaur A, Khurana P, Khurana JP, Tyagi AK, Balyan HS, Gupta PK (2005) Mapping of a major QTL for pre-harvest sprouting tolerance on chromosome 3A in bread wheat. Theor Appl Genet 111: 1052-1059.
20. Lagudah ES, Appels R, Brown AHD, McNeil D (1991) The molecular-genetic analysis of Triticum tauschii, the D-genome donor to hexaploid wheat. Genome 34: 375-386.
21. Laurie DA, Bennett MD (1988) The production of haploid wheat plants from wheat × maize crosses. Theor Appl Genet 76: 393-397.
22. Li C, Ni P, Francki M, Hunter A, Zhang Y, Schibeci D, Li H, Tarr A, Wang J, Cakir M, Yu J, Bellgard M, Lance R, Appels R (2004) Genes controlling seed dormancy and pre-harvest sprouting in a rice-wheat-barley comparison. Funct Integr Genomics 4: 84-93.
23. Lyttle TW (1991) Segregation distorters. Annu Rev Genet 25: 511-557.
24. Mares D, Mrva K, Cheong J, Williams K, Watson B, Storlie E, Sutherland M, Zou Y (2005) A QTL located on chromosome 4A associated with dormancy in white- and red-grained wheats of diverse origin. Theor Appl Genet 111: 1357-1364.
25. McKibbin RS, Wilkinson MD, Bailey PC, Flintham JE, Andrew LM, Lazzeri PA, Gale MD, Lenton JR, Holdsworth MJ (2002) Transcripts of Vp-1 homologues are misspliced in modern wheat and ancestral species. Proc Natl Acad Sci USA 99: 10203-10208.
26. Mori M, Uchino N, Chono M, Kato K, Miura H (2005) Mapping QTLs for grain dormancy on wheat chromosome 3A and the group 4 chromosomes, and their combined effect. Theor Appl Genet 110: 1315-1323.
27. Nakamura S, Komatsuda T, Miura H (2007) Mapping diploid wheat homologues of Arabidopsis seed ABA signaling genes and QTLs for seed dormancy. Theor Appl Genet 114: 1129-1139.
28. Nicot N, Chiquet V, Gandon B, Amilhat L, Legeai F, Leroy P, Bernard M, Sourdille P (2004) Study of simple sequence repeat (SSR) markers from wheat expressed sequence tags (ESTs). Theor Appl Genet 109: 800-805.
29. Noda K, Matsuura T, Maekawa M, Taketa S (2002) Chromosomes responsible for sensitivity of embryo to abscisic acid and dormancy in wheat. Euphytica 123: 203-209.
30. Ogbonnaya FC, Imtiaz M, DePauw RM (2007) Haplotype diversity of preharvest sprouting QTLs in wheat. Genome 50: 107-118.
31. Ogbonnaya FC, Imtiaz M, Ye G, Hearnden PR, Hernandez E, Eastwood RF, van Ginkel M, Shorter SC, Winchester JM (2008) Genetic and QTL analyses of seed dormancy and preharvest sprouting resistance in wheat germplasm CN10955. Theor Appl Genet 116: 891-902.
32. Ranford JC, Bryce JH, Morris PC (2002) PM19, a barley (Hordeum vulgare L.) gene encoding a putative plasma membrane protein, is expressed during embryo development and dormancy. J Exp Bot 53: 147-148.
33. Röder MS, Korzun V, Wendehake K, Plaschke J, Tixier MH, Leroy P, Ganal MW (1998) A microsatellite map of wheat. Genetics 149: 2007-2023.
34. Singh K, Ghai M, Garg M, Chhuneja P, Kaur P, Schnurbusch T, Keller B, Dhaliwal HS (2007) An integrated molecular linkage map of diploid wheat based on a Triticum boeoticum × T. monococcum RIL population. Theor Appl Genet 115: 301-312.
35. Singh R, Matus-Cádiz MA, Båga M, Hucl P, Chibbar RN (2008) Comparison of different methods for phenotyping pre-harvest sprouting in white-grained wheat. Cereal Chem 85: 238-242.
36. Somers DJ, Isaac P, Edwards K (2004) A high-density microsatellite consensus map for bread wheat (Triticum aestivum L.). Theor Appl Genet 109: 1105-1114.
37. Sourdille P, Tavaud M, Charmet G, Bernard M (2001) Transferability of wheat microsatellites to diploid Triticeae species carrying the A, B and D genomes. Theor Appl Genet 103: 346-352.
38. Sreenivasulu N, Usadel B, Winter A, Radchuk V, Scholz U, Stein N, Weschke W, Strickert M, Close TJ, Stitt M, Graner A, Wobus U (2008) Barley grain maturation and germination: metabolic pathway and regulatory network commonalities and differences highlighted by new MapMan/PageMan profiling tools. Plant Physiol 146: 1738-1758.
39. Tondelli A, Francia E, Barabaschi D, Aprile A, Skinner JS, Stockinger EJ, Stanca AM, Pecchioni N (2005) Mapping regulatory genes as candidates for cold and drought stress tolerance in barley. Theor Appl Genet 112: 445-454.
40. Torada A, Ikeguchi S, Koike M (2005) Mapping and validation of PCR-based markers associated with a major QTL for seed dormancy in wheat. Euphytica 143: 251-255.
41. van Ooijen JW (2004) MapQTL®5, software for the mapping of quantitative trait loci in experimental populations. Kyazma BV, Wageningen, The Netherlands.
42. van Ooijen JW, Voorrips RE (2001) Joinmap®3. 0, software for the calculation of genetic linkage maps. Plant Research International, Wageningen, The Netherlands.
43. Vardi A (1973) Introgression between different ploidy levels in the wheat group. In: Sears ER, Sears LMS (eds) Proceedings of 4th international wheat genetics symposium. University Missouri Press, Columbia, USA, pp 131-141.
44. Vos P, Hogers R, Bleeker M, Reijans M, van de Lee T, Hornes M, Friters A, Pot J, Paleman J, Kuiper M, Zabeau M (1995) AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res 23: 4407-4414.
45. Walker-Simmons M (1987) ABA levels and sensitivity in developing wheat embryos of sprouting resistant and susceptible cultivars. Plant Physiol 84: 61-66.
46. Wilson ID, Barker GLA, Lu C, Coghill JA, Beswick RW, Lenton JR, Edwards KJ (2005) Alteration of the embryo transcriptome of hexaploid winter wheat (Triticum aestivum cv. Mercia) during maturation and germination. Funct Integr Genomics 5: 144-154.
47. Yu K, Park SJ, Poysa V (2000) Marker assisted selection of common beans for resistance to common bacterial blight: efficacy and economics. Plant Breed 119: 411-415.
48. Zadoks JC, Chang TT, Konzak CF (1974) A decimal code for the growth stages of cereals. Weed Res 14: 415-421.
49. Zanetti S, Winzeler M, Keller M, Keller B, Messmer M (2000) Genetic analysis of pre-harvest sprouting resistance in a wheat × spelt cross. Crop Sci 40: 1406-1417.