Molecular characterization and phylogenetic analysis of the genome of porcine torovirus

Archives of Virology

Volumn 159, Issue 4, 2014, Pages 773-778

  Sun, Huan ^a   Lan, Daoliang ^a,b   Lu, Lifang ^c   Chen, Molin ^a   Wang, Changsong ^a   Hua, Xiuguo ^a  

^a SHANGHAI JIAO TONG UNIVERSITY   (China)

^b SOUTHWEST UNIVERSITY FOR NATIONALITIES   (China)

^c GE (China) Research and Development Center   (China)

Author keywords

China; Comparative analysis; Genome; Porcine torovirus

Indexed keywords

VIRUS PROTEIN; VIRUS RNA;

ANIMAL; ARTICLE; CLASSIFICATION; CLUSTER ANALYSIS; DNA SEQUENCE; FECES; GENETICS; ISOLATION AND PURIFICATION; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; SEQUENCE HOMOLOGY; SWINE; TOROVIRUS; VIROLOGY; VIRUS GENOME;

ANIMALS; CLUSTER ANALYSIS; FECES; GENOME, VIRAL; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, VIRAL; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID; SWINE; TOROVIRUS; VIRAL PROTEINS;

EID: 84897077839     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-013-1861-x     Document Type: Article

References (30)

1. Aita T, Kuwabara M, Murayama K, Sasagawa Y, Yabe S, Higuchi R, Tamura T, Miyazaki A, Tsunemitsu H (2012) Characterization of epidemic diarrhea outbreaks associated with bovine torovirus in adult cows. Arch Virol 157: 423-431.
2. Beards GM, Hall C, Green J, Flewett TH, Lamouliatte F, Du Pasquier P (1984) An enveloped virus in stools of children and adults with gastroenteritis that resembles the Breda virus of calves. Lancet 1: 1050-1052.
3. Biegert A, Mayer C, Remmert M, Soding J, Lupas AN (2006) The MPI bioinformatics toolkit for protein sequence analysis. Nucleic Acids Res 34: W335-W339.
4. Burland TG (2000) DNASTAR's Lasergene sequence analysis software. Methods Mol Biol 132: 11.
5. Draker R, Roper RL, Petric M, Tellier R (2006) The complete sequence of the bovine torovirus genome. Virus Res 115: 56-68.
6. Edgar RC (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32: 6.
7. Fagerland JA, Pohlenz JF, Woode GN (1986) A morphological study of the replication of Breda virus (proposed family Toroviridae) in bovine intestinal cells. J Gen Virol 67(Pt 7): 1293-1304.
8. Finn RD, Clements J, Eddy SR (2011) HMMER web server: interactive sequence similarity searching. Nucleic Acids Res 39: W29-W37.
9. Gallagher T, Buchmeier M (2001) Coronavirus spike proteins in viral entry and pathogenesis. Virology 279: 371-374.
10. Hildebrand A, Remmert M, Biegert A, Söding J (2009) Fast and accurate automatic structure prediction with HHpred. Proteins: Struct Funct Bioinform 77: 128-132.
11. Horzinek MC, Ederveen J, Weiss M (1985) The nucleocapsid of Berne virus. J Gen Virol 66(Pt 6): 1287-1296.
12. Horzinek MC, Ederveen J, Kaeffer B, de Boer D, Weiss M (1986) The peplomers of Berne virus. J Gen Virol 67(Pt 11): 2475-2483.
13. Koopmans M, Ederveen J, Woode GN, Horzinek MC (1986) Surface proteins of Breda virus. Am J Vet Res 47: 1896-1900.
14. Koopmans MP, Goosen ES, Lima AA, McAuliffe IT, Nataro JP, Barrett LJ, Glass RI, Guerrant RL (1997) Association of torovirus with acute and persistent diarrhea in children. Pediatr Infect Dis J 16: 504-507.
15. Krishnan T, Naik TN (1997) Electronmicroscopic evidence of torovirus like particles in children with diarrhoea. Indian J Med Res 105: 108-110.
16. Kroneman A, Cornelissen LA, Horzinek MC, de Groot RJ, Egberink HF (1998) Identification and characterization of a porcine torovirus. J Virol 72: 3507-3511.
17. Matiz K, Kecskemeti S, Kiss I, Adam Z, Tanyi J, Nagy B (2002) Torovirus detection in faecal specimens of calves and pigs in Hungary: short communication. Acta Vet Hung 50: 293-296.
18. Pignatelli J, Jimenez M, Luque J, Rejas MT, Lavazza A, Rodriguez D (2009) Molecular characterization of a new PToV strain. Evolutionary implications. Virus Res 143: 33-43.
19. Pignatelli J, Grau-Roma L, Jimenez M, Segales J, Rodriguez D (2010) Longitudinal serological and virological study on porcine torovirus (PToV) in piglets from Spanish farms. Vet Microbiol 146: 260-268.
20. Pignatelli J, Jimenez M, Grau-Roma L, Rodriguez D (2010) Detection of porcine torovirus by real time RT-PCR in piglets from a Spanish farm. J Virol Methods 163: 398-404.
21. Reeder J, Giegerich R (2004) Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics. BMC Bioinform 5: 104.
22. Shin D-J, Park S-I, Jeong Y-J, Hosmillo M, Kim H-H, Kim H-J, Kwon H-J, Kang M-I, Park S-J, Cho K-O (2010) Detection and molecular characterization of porcine toroviruses in Korea. Arch Virol 155: 417-422.
23. Snijder EJ, Horzinek MC (1993) Toroviruses replication, evolution and comparison with other members of the coronavirus-like superfamily. J Gen Virol 74: 2305-2316.
24. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28: 2731-2739.
25. Theis C, Reeder J, Giegerich R (2008) KnotInFrame: prediction of -1 ribosomal frameshift events. Nucleic Acids Res 36: 6013-6020.
26. Waterhouse AM, Procter JB, Martin DMA, Clamp M, Barton GJ (2009) Jalview version 2-a multiple sequence alignment editor and analysis workbench. Bioinformatics 25: 1189-1191.
27. Weiss M, Steck F, Horzinek MC (1983) Purification and partial characterization of a new enveloped RNA virus (Berne virus). J Gen Virol 64(Pt 9): 1849-1858.
28. Weiss M, Horzinek MC (1986) Morphogenesis of Berne virus (proposed family Toroviridae). J Gen Virol 67(Pt 7): 1305-1314.
29. Woode GN, Reed DE, Runnels PL, Herrig MA, Hill HT (1982) Studies with an unclassified virus isolated from diarrheic calves. Vet Microbiol 7: 221-240.
30. Zanoni R, Weiss M, Peterhans E (1986) The haemagglutinating activity of Berne virus. J Gen Virol 67(Pt 11): 2485-2488.