The complete nucleotide sequence of the carbapenem resistance-conferring conjugative plasmid pLD209 from a Pseudomonas putida clinical strain reveals a chimeric design formed by modules derived from both environmental and clinical bacteria

Antimicrobial Agents and Chemotherapy

Volumn 58, Issue 3, 2014, Pages 1816-1821

  Marchiaro, Patricia M ^a   Brambilla, Luciano ^a   Morán Barrio, Jorgelina ^a   Revale, Santiago ^b   Pasteran, Fernando ^c   Vila, Alejandro J ^a   Viale, Alejandro M ^a   Limansky, Adriana S ^a  

^a UNIVERSIDAD NACIONAL DE ROSARIO   (Argentina)

^b Instituto de Agrobiotecnología de Rosario INDEAR Predio CCT Rosario   (Argentina)

^c INSTITUTO NACIONAL DE ENFERMEDADES INFECCIOSAS   (Argentina)

Author keywords

[No Author keywords available]

Indexed keywords

BETA LACTAMASE; CARBAPENEM;

AACA4 GENE; ARTICLE; BACTERIAL GENE; BACTERIAL STRAIN; BLA VIM 2 GENE; CONTROLLED STUDY; GENE CASSETTE; GENE MAPPING; INTEGRON; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PLASMID; PRIORITY JOURNAL; PSEUDOMONAS PUTIDA; SEQUENCE HOMOLOGY; STRAIN DIFFERENCE; UNINDEXED SEQUENCE;

BASE SEQUENCE; BETA-LACTAM RESISTANCE; CARBAPENEMS; CONJUGATION, GENETIC; GENES, BACTERIAL; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; PSEUDOMONAS PUTIDA; R FACTORS;

EID: 84896866844     PISSN: 00664804     EISSN: 10986596     Source Type: Journal    
DOI: 10.1128/AAC.02494-13     Document Type: Article

References (33)

1. Aumeran C, Paillard C, Robin F, Kanold J, Baud O, Bonnet R, Souweine B, Traore O. 2007. Pseudomonas aeruginosa and Pseudomonas putida outbreak associated with contaminated water outlets in an oncohaematology paediatric unit. J. Hosp. Infect. 65:47-53. http://dx.doi.org/10.1016/j.jhin.2006.08.009. (Pubitemid 44939366)
2. Almuzara M, Radice M, Gárate N de, Kossman A, Cuirolo A, Santella G, Famiglietti A, Gutkind G, Vay V. 2007. VIM-2-producing Pseudomonas putida, Buenos Aires. Emerg. Infect. Dis. 13:668-669. http://dx.doi.org/10.3201/eid1304. 061083. (Pubitemid 46525135)
3. VIM-2 in Pseudomonas putida from Argentina. J. Infect. Dev. Ctries. 4:412-416. http://dx.doi.org/10.3855/jidc.1012.
4. Juan C, Zamorano L, Mena A, Albertí S, Pérez JL, Oliver A. 2010. Metallo-β-lactamase-producing Pseudomonas putida as a reservoir of multidrug resistance elements that can be transferred to successful Pseudomonas aeruginosa clones. J. Antimicrob. Chemother. 65:474-478. http://dx.doi.org/10. 1093/jac/dkp491.
5. Carvalho-Assef AP, Gomes MZ, Silva AR, Werneck L, Rodrigues CA, Souza MJ, Asensi MD. 2010. IMP-16 in Pseudomonas putida and Pseudomonas stutzeri: potential reservoirs of multidrug resistance. J. Med. Microbiol. 59:1130-1131. http://dx.doi.org/10.1099/jmm.0.020487-0.
6. Crowder MW, Spencer J, Vila AJ. 2006. Metallo-β-lactamases: novel weaponry for antibiotic resistance in bacteria. Acc. Chem. Res. 39:721-728. http://dx.doi.org/10.1021/ar0400241.
7. VIM-2 in Pseudomonas putida. Antimicrob. Agents Chemother. 50:2889-2891. http://dx.doi.org/10.1128/AAC.00398-06.
8. VIM-2-harboring integrons isolated in India, Russia, and the United States arise from an ancestral class 1 integron predating the formation of the 3= conserved sequence. Antimicrob. Agents Chemother. 51:2636-2638. http://dx.doi.org/10.1128/AAC.01043-06.
9. Smillie C, Garcillán-Barcia P, Francia MV, Rocha E, de la Cruz F. 2010. Mobility of plasmids. Microbiol. Mol. Biol. Rev. 74:434-452. http://dx.doi.org/10.1128/MMBR.00020-10.
10. Norman A, Hansen LH, Sørensen SJ. 2009. Conjugative plasmids: vessels of the communal gene pool. Philos. Trans. R. Soc. B 364:2275-2289. http://dx.doi.org/10.1098/rstb.2009.0037.
11. Cantón R. 2009. Antibiotic resistance genes from the environment: a perspective through newly identified antibiotic resistance mechanisms in the clinical setting. Clin. Microbiol. Infect. Dis. 15:20-25. http://dx.doi.org/10. 1111/j.1469-0691.2008.02679.x.
12. Garcillán-Barcia MP, Alvarado A, de la Cruz F. 2011. Identification of bacterial plasmids based on mobility and plasmid population biology. FEMS Microbiol. Rev. 35:936-956. http://dx.doi.org/10.1111/j.1574-6976. 2011.00291.x.
13. Perry JA, Wright GD. 2013. The antibiotic resistance "mobilome" : searching for the link between environment and clinic. Front. Microbiol. 4:138. http://dx.doi.org/10.3389/fmicb.2013.00138.
14. VIM-2 from Pseudomonas aeruginosa. J. Antimicrob. Chemother. 68:1060-1065. http://dx.doi.org/10.1093/jac/dks526.
15. Hemmerich C, Buechlein A, Podicheti R, Revanna KV, Dong Q. 2010. An Ergatis-based prokaryotic genome annotation web server. Bioinformatics 26:1122-1124. http://dx.doi.org/10.1093/bioinformatics/btq090.
16. Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, Edwards RA, Formsma K, Gerdes S, Glass EM, Kubal M, Meyer F, Olsen GJ, Olson R, Osterman AL, Overbeek RA, McNeil LK, Paarmann D, Paczian T, Parrello B, Pusch GD, Reich C, Stevens R, Vassieva O, Vonstein V, Wilke A, Zagnitko O. 2008. The RAST server: rapid annotations using subsystems technology. BMC Genomics 9:75. http://dx.doi.org/ 10.1186/1471-2164-9-75.
17. Garcillán-Barcia MP, Francia MV, de la Cruz F. 2009. The diversity of conjugative relaxases and its application in plasmid classification. FEMS Microbiol. Rev. 33:657-687. http://dx.doi.org/10.1111/j.1574-6976.2009.00168.x.
18. Alvarado A, Garcillán-Barcia MP, de la Cruz F. 2012. A degenerate primer MOB typing (DPMT) method to classify gamma-proteobacterial plasmids in clinical and environmental settings. PLoS One 7:e40438. http://dx.doi.org/10. 1371/journal.pone.0040438.
19. Felsenstein J. 1989. PHYLIP - phylogeny inference package (version 3.2). Cladistics 5:164-166.
20. Rhodes G, Parkhill J, Bird C, Ambrose K, Jones MC, Huys G, Swings J, Pickup RW. 2004. Complete nucleotide sequence of the conjugative tetracycline resistance plasmid pFBAOT6, a member of a group of IncU plasmids with global ubiquity. Appl. Environ. Microbiol. 70:7497-7510. http://dx.doi.org/10.1128/AEM. 70.12.7497-7510.2004. (Pubitemid 39643817)
21. Kulinska A, Czeredys M, Hayes F, Jagura-Burdzy G. 2008. Genomic and functional characterization of the modular broad-host-range RA3 plasmid, the archetype of the IncU group. Appl. Environ. Microbiol. 74:4119-4132. http://dx.doi.org/10.1128/AEM.00229-08. (Pubitemid 351962438)
22. Tauch A, Schneiker AS, Selbitschka W, Puhler A, Van Overbeek LS, Smalla K, Thomas CM, Bailey MJ, Forney LJ, Weightman A, Ceglowski P, Pembroke T, Tietze E, Schroder G, Lanka E, Van Elsas JD. 2002. The complete nucleotide sequence and environmental distribution of the cryptic, conjugative, broad-host-range plasmid pIPO2 isolated from bacteria of the wheat rhizosphere. Microbiology 148:1637-1653. http://mic.sgmjournals.org/content/148/6/1637.long. (Pubitemid 34679019)
23. Schneiker S, Keller M, Droge M, Lanka E, Puhler A, Selbitschka W. 2001. The genetic organization and evolution of the broad host range mercury resistance plasmid pSB102 isolated from a microbial population residing in the rhizosphere of alfalfa. Nucleic Acids Res. 29:5169-5181. http://dx.doi.org/10. 1093/nar/29.24.5169. (Pubitemid 34065436)
24. Marques MV, da Silva AM, Gomes SL. 2001. Genetic organization of plasmid pXF51 from the plant pathogen Xylella fastidiosa. Plasmid 45: 184-199. http://dx.doi.org/10.1006/plas.2000.1514. (Pubitemid 32579406)
25. Pieretti I, Royer M, Barbe V, Carrere S, Koebnik R, Cociancich S, Couloux A, Darrasse A, Gouzy J, Jacques MA, Lauber E, Mangenot CS, Poussier S, Segurens B, Szurek B, Verdier V, Arlat M, Rott P. 2009. The complete genome sequence of Xanthomonas albilineans provides new insights into the reductive genome evolution of the xylem-limited Xanthomonadaceae. BMC Genomics 10:616. http://dx.doi.org/10.1186/1471-2164-10-616.
26. Szczepanowski R, Krahn I, Linke B, Goesmann A, Puhler A, Schluter A. 2004. Antibiotic multiresistance plasmid pRSB101 isolated from a waste-water treatment plant is related to plasmids residing in phytopathogenic bacteria and carries eight different resistance determinants including a multidrug transport system. Microbiology 150:3613-3630. http://dx.doi.org/10.1099/mic.0.27317-0. (Pubitemid 39545310)
27. Minakhina S, Kholodii G, Mindlin S, Yurieva O, Nikiforov V. 1999. Tn5053 family transposons are res site hunters sensing plasmidal res sites occupied by cognate resolvases. Mol. Microbiol. 33:1059-1068. http://dx.doi.org/10.1046/j. 1365-2958.1999.01548.x. (Pubitemid 29425257)
28. Kamali-Moghaddam M, Sundström L. 2000. Transposon targeting determined by resolvase. FEMS Microbiol. Lett. 186:55-59. http://dx.doi.org/10. 1111/j.1574-6968.2000.tb09081.x. (Pubitemid 30211741)
29. Petrovski S, Stanisich VA. 2010. Tn502 and Tn512 are res site hunters that provide evidence of resolvase-independent transposition to random sites. J. Bacteriol. 192:1865-1874. http://dx.doi.org/10.1128/JB.01322-09.
30. Horak R, Kivisaar M. 1999. Regulation of the transposase of Tn4652 by the transposon-encoded protein TnpC. J. Bacteriol. 181:6312-6318. (Pubitemid 29512940)
31. IMP-13, harboured by a novel Tn5051-type transposon disseminating carbapenemase genes in Europe: report from the SENTRY worldwide antimicrobial surveillance programme. J. Antimicrob. Chemother. 52:583-590. http://dx.doi.org/10.1093/jac/dkg410.
32. Scotta C, Juan C, Cabot G, Oliver A, Lalucat J, Bennasar A, Alberti S. 2011. Environmental microbiota represents a natural reservoir for dissemination of clinically relevant metallo-β-lactamases. Antimicrob. Agents Chemother. 55: 5376-5379. http://dx.doi.org/10.1128/AAC.00716-11.
33. Lagatolla C, Edalucci E, Dolzani L, Riccio ML, De Luca F, Medessi E, Rossolini GM, Tonin EA. 2006. Molecular evolution of metallo-β-lactamase- producing Pseudomonas aeruginosa in a nosocomial setting of high-level endemicity. J. Clin. Microbiol. 44:2348-2353. http://dx.doi.org/10.1128/JCM. 00258-06. (Pubitemid 44092397)